FvH4_1g09990

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001423
Physical Location & Seq
Forward (+)
5427406 .. 5431174
3769 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09990.t5

Sequence Viewer

Length: 834 bp
ATGGCTTACCCACAACAACAGAATCAACAACCGCTTTTCAGTTCGCCGTTTGGGGACACGACGTTGACGAAGGTCTTCGTCGGAGGGCTGGCCTGGGAGACCCAGAGCGAGACGCTGCGCCGCCACTTCGACCAGTACGGCGATATACTCGAGGCCGTCGTTATCACCGATAAGAACACCGGCCGATCCAAAGGCTATGGCTTTGTGACATTTCGTGATCCCGACTCTGCAAGAAGGGCCTGTGCGGACCCGAATCCTGTCATTGATGGCCGAAGGGCTAACTGTAATCTTGCTTCTCTAGGCCGGCCTCGCCCATCATTCCATTTCCATGGGCAATTGAGATCACCAGCGCCAATCCTTGGTCGTGTGCAAGCTCCAAGAGCTGCTTCTTACATGGGGAGTCCTGGTTATCAACACCCTCTTTCTCATGCTTATCAGCCCGGGTTTGTTTACCCTTCTTATGGGTACACGGCATATGGACCTGAATATGTCTACCCACAGCAGGGTGTCTACGGTCCTTACATGAATCAGCAATACCTTCAGATGTACGGTGTACCGGGGACAGTCAATCCCGGTGTATATCCCTATGGACAAGTAGGTCATTCTCCTTCCGGCAATCCTGGGTATACAACGGTTCAAAGCTATGGAATTCCAGGCCATCATGTAGTGCAATTCACTGGGTCCAACGTCAGTGGAGCATCACCAGTTGCGCTTCCCACAATTCAAACACCATATCCTGCAGGTATAGCTGCACCAGCTCCAGGACAGGCGCAACTGATTCTTCCGACTAATTCTCCTCAGTTCACCAGCAGTTCTGATCAAACTGCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

278

Amino Acids

29.87

Weight (kDa)

8.76

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 25 - 82 9.3e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 597
Acc36I ACCTGC 1 cut(s) 731
AccB7I CCANNNNNTGG 1 cut(s) 359
AccI GTMKAC 3 cut(s) 492, 510, 626
AciI CCGC 3 cut(s) 32, 121, 245
AclWI GGATC 2 cut(s) 180, 212
AcoI YGGCCR 2 cut(s) 181, 268
AcsI RAATTY 1 cut(s) 648
AcuI CTGAAG 1 cut(s) 524
AfaI GTAC 4 cut(s) 137, 467, 548, 555
AfiI CCNNNNNNNGG 5 cut(s) 359, 461, 502, 503, 761
AgsI TTSAA 2 cut(s) 638, 725
AjnI CCWGG 5 cut(s) 92, 403, 619, 652, 760
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
AluBI AGCT 5 cut(s) 374, 383, 642, 749, 758
AluI AGCT 5 cut(s) 374, 383, 642, 749, 758
Alw26I GTCTC 2 cut(s) 92, 104
AlwI GGATC 2 cut(s) 180, 212
Ama87I CYCGRG 2 cut(s) 149, 440
AoxI GGCC 8 cut(s) 90, 153, 181, 237, 268, 301, 305, 655
ApeKI GCWGC 3 cut(s) 115, 383, 749
ApoI RAATTY 1 cut(s) 648
Asp700I GAANNNNTTC 1 cut(s) 74
AspLEI GCGC 4 cut(s) 120, 352, 712, 772
AspS9I GGNCC 5 cut(s) 237, 247, 479, 515, 681
AsuC2I CCSGG 4 cut(s) 441, 442, 558, 573
AsuHPI GGTGA 4 cut(s) 157, 336, 693, 796
AvaI CYCGRG 2 cut(s) 149, 440
AvaII GGWCC 4 cut(s) 247, 479, 515, 681
BarI GAAGNNNNNNTAC 2 cut(s) 277, 309
BbsI GAAGAC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 102, 370, 736
BccI CCATC 3 cut(s) 260, 322, 666
BceAI ACGGC 4 cut(s) 31, 140, 154, 486
BciT130I CCWGG 5 cut(s) 94, 405, 621, 654, 762
BclI TGATCA 1 cut(s) 817
BcnI CCSGG 4 cut(s) 441, 442, 558, 573
BcoDI GTCTC 2 cut(s) 92, 104
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 2 cut(s) 738, 825
BfoI RGCGCY 1 cut(s) 353
BfuAI ACCTGC 1 cut(s) 731
BisI GCNGC 4 cut(s) 116, 121, 384, 750
BlsI GCNGC 4 cut(s) 117, 122, 385, 751
Bme1390I CCNGG 9 cut(s) 94, 405, 441, 442, 558, 573, 621, 654, 762
Bme18I GGWCC 4 cut(s) 247, 479, 515, 681
BmeT110I CYCGRG 2 cut(s) 149, 440
BmgT120I GGNCC 5 cut(s) 237, 247, 479, 515, 681
BmiI GGNNCC 2 cut(s) 249, 682
BmrFI CCNGG 9 cut(s) 94, 405, 441, 442, 558, 573, 621, 654, 762
BmrI ACTGGG 1 cut(s) 687
BmsI GCATC 1 cut(s) 707
BmuI ACTGGG 1 cut(s) 687
BoxI GACNNNNGTC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 744
BpuMI CCSGG 4 cut(s) 441, 442, 558, 573
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 6 cut(s) 93, 328, 358, 440, 557, 620
BsaXI ACNNNNNCTCC 4 cut(s) 391, 421, 778, 808
Bsc4I CCNNNNNNNGG 5 cut(s) 359, 461, 502, 503, 761
Bse118I RCCGGY 2 cut(s) 179, 303
Bse1I ACTGG 3 cut(s) 133, 682, 704
BseBI CCWGG 5 cut(s) 94, 405, 621, 654, 762
BseDI CCNNGG 6 cut(s) 93, 328, 358, 440, 557, 620
BseLI CCNNNNNNNGG 5 cut(s) 359, 461, 502, 503, 761
BseMII CTCAG 1 cut(s) 812
BseNI ACTGG 3 cut(s) 133, 682, 704
BseRI GAGGAG 1 cut(s) 786
BseX3I CGGCCG 1 cut(s) 181
BseXI GCAGC 3 cut(s) 102, 370, 736
BsgI GTGCAG 1 cut(s) 735
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 8 cut(s) 92, 155, 183, 239, 270, 303, 307, 657
BsiEI CGRYCG 1 cut(s) 184
BsiHKCI CYCGRG 2 cut(s) 149, 440
BsiSI CCGG 6 cut(s) 180, 304, 441, 557, 573, 612
BslFI GGGAC 2 cut(s) 68, 574
BslI CCNNNNNNNGG 5 cut(s) 359, 461, 502, 503, 761
BsmAI GTCTC 2 cut(s) 92, 104
BsmBI CGTCTC 1 cut(s) 104
BsmFI GGGAC 2 cut(s) 68, 574
BsnI GGCC 8 cut(s) 92, 155, 183, 239, 270, 303, 307, 657
Bso31I GGTCTC 1 cut(s) 92
BsoBI CYCGRG 2 cut(s) 149, 440
Bsp143I GATC 4 cut(s) 185, 217, 341, 817
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 3 cut(s) 32, 121, 245
BspANI GGCC 8 cut(s) 92, 155, 183, 239, 270, 303, 307, 657
BspCNI CTCAG 1 cut(s) 811
BspLI GGNNCC 2 cut(s) 249, 682
BspMAI CTGCAG 2 cut(s) 742, 829
BspMI ACCTGC 1 cut(s) 731
BspPI GGATC 2 cut(s) 180, 212
BspTNI GGTCTC 1 cut(s) 92
BsrFI RCCGGY 2 cut(s) 179, 303
BsrI ACTGG 3 cut(s) 133, 682, 704
BssAI RCCGGY 2 cut(s) 179, 303
BssECI CCNNGG 6 cut(s) 93, 328, 358, 440, 557, 620
BssMI GATC 4 cut(s) 185, 217, 341, 817
BssNAI GTATAC 1 cut(s) 627
BssT1I CCWWGG 2 cut(s) 328, 358
Bst1107I GTATAC 1 cut(s) 627
Bst2UI CCWGG 5 cut(s) 94, 405, 621, 654, 762
Bst4CI ACNGT 5 cut(s) 284, 515, 551, 565, 634
BstC8I GCNNGC 3 cut(s) 90, 305, 372
BstDEI CTNAG 1 cut(s) 798
BstDSI CCRYGG 1 cut(s) 328
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 4 cut(s) 120, 352, 712, 772
BstKTI GATC 4 cut(s) 188, 220, 344, 820
BstMAI GTCTC 2 cut(s) 92, 104
BstMBI GATC 4 cut(s) 185, 217, 341, 817
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 5 cut(s) 236, 309, 380, 746, 755
BstNI CCWGG 5 cut(s) 94, 405, 621, 654, 762
BstPAI GACNNNNGTC 1 cut(s) 71
BstSCI CCNGG 9 cut(s) 92, 403, 439, 440, 556, 571, 619, 652, 760
BstSFI CTRYAG 2 cut(s) 738, 825
BstV1I GCAGC 3 cut(s) 102, 370, 736
BstV2I GAAGAC 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 329
BstZ17I GTATAC 1 cut(s) 627
BstZI CGGCCG 1 cut(s) 181
BsuRI GGCC 8 cut(s) 92, 155, 183, 239, 270, 303, 307, 657
BtgI CCRYGG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 675, 697
BveI ACCTGC 1 cut(s) 731
Cac8I GCNNGC 3 cut(s) 90, 305, 372
CfoI GCGC 4 cut(s) 120, 352, 712, 772
Cfr10I RCCGGY 2 cut(s) 179, 303
Cfr13I GGNCC 5 cut(s) 237, 247, 479, 515, 681
Cfr9I CCCGGG 1 cut(s) 440
CseI GACGC 1 cut(s) 121
Csp6I GTAC 4 cut(s) 136, 466, 547, 554
CspCI CAANNNNNGTGG 2 cut(s) 673, 708
CviAII CATG 5 cut(s) 329, 394, 428, 523, 662
CviQI GTAC 4 cut(s) 136, 466, 547, 554
DdeI CTNAG 1 cut(s) 798
DpnI GATC 4 cut(s) 187, 219, 343, 819
DpnII GATC 4 cut(s) 185, 217, 341, 817
DrdI GACNNNNNNGTC 1 cut(s) 597
DseDI GACNNNNNNGTC 1 cut(s) 597
EaeI YGGCCR 2 cut(s) 181, 268
EagI CGGCCG 1 cut(s) 181
EclXI CGGCCG 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 328, 358
Eco31I GGTCTC 1 cut(s) 92
Eco47I GGWCC 4 cut(s) 247, 479, 515, 681
Eco52I CGGCCG 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 524
Eco88I CYCGRG 2 cut(s) 149, 440
EcoO109I RGGNCCY 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 648
EcoRII CCWGG 5 cut(s) 92, 403, 619, 652, 760
EcoT14I CCWWGG 2 cut(s) 328, 358
ErhI CCWWGG 2 cut(s) 328, 358
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 5 cut(s) 332, 397, 431, 526, 665
FalI AAGNNNNNCTT 2 cut(s) 370, 402
FaqI GGGAC 2 cut(s) 68, 574
FatI CATG 5 cut(s) 328, 393, 427, 522, 661
FauNDI CATATG 1 cut(s) 475
FbaI TGATCA 1 cut(s) 817
FblI GTMKAC 3 cut(s) 492, 510, 626
Fnu4HI GCNGC 4 cut(s) 116, 121, 384, 750
FseI GGCCGGCC 1 cut(s) 307
Fsp4HI GCNGC 4 cut(s) 116, 121, 384, 750
FspBI CTAG 1 cut(s) 299
GlaI GCGC 4 cut(s) 119, 351, 711, 771
GluI GCNGC 4 cut(s) 116, 121, 384, 750
GsuI CTGGAG 1 cut(s) 744
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 8 cut(s) 92, 155, 183, 239, 270, 303, 307, 657
HapII CCGG 6 cut(s) 180, 304, 441, 557, 573, 612
HgaI GACGC 1 cut(s) 121
HhaI GCGC 4 cut(s) 120, 352, 712, 772
Hin1II CATG 5 cut(s) 332, 397, 431, 526, 665
Hin6I GCGC 4 cut(s) 118, 350, 710, 770
HinP1I GCGC 4 cut(s) 118, 350, 710, 770
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 6 cut(s) 22, 224, 253, 400, 526, 778
HpaII CCGG 6 cut(s) 180, 304, 441, 557, 573, 612
HphI GGTGA 4 cut(s) 157, 336, 693, 796
Hpy166II GTNNAC 8 cut(s) 66, 451, 468, 493, 511, 554, 627, 804
Hpy188I TCNGA 4 cut(s) 83, 543, 786, 817
Hpy188III TCNNGA 2 cut(s) 215, 221
Hpy8I GTNNAC 8 cut(s) 66, 451, 468, 493, 511, 554, 627, 804
Hpy99I CGWCG 3 cut(s) 64, 83, 161
HpyAV CCTTC 6 cut(s) 64, 228, 267, 465, 548, 618
HpyCH4III ACNGT 5 cut(s) 284, 515, 551, 565, 634
HpyCH4IV ACGT 2 cut(s) 62, 687
HpyCH4V TGCA 6 cut(s) 230, 370, 670, 740, 752, 827
HpyF10VI GCNNNNNNNGC 5 cut(s) 236, 309, 380, 746, 755
HpyF3I CTNAG 1 cut(s) 798
HpySE526I ACGT 2 cut(s) 62, 687
Hsp92II CATG 5 cut(s) 332, 397, 431, 526, 665
HspAI GCGC 4 cut(s) 118, 350, 710, 770
KroI GCCGGC 1 cut(s) 303
KroNI GCCGGC 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 817
Kzo9I GATC 4 cut(s) 185, 217, 341, 817
LmnI GCTCC 3 cut(s) 379, 695, 763
Lsp1109I GCAGC 3 cut(s) 102, 370, 736
LweI GCATC 1 cut(s) 707
MaeI CTAG 1 cut(s) 299
MaeII ACGT 2 cut(s) 62, 687
MaeIII GTNAC 1 cut(s) 205
MalI GATC 4 cut(s) 187, 219, 343, 819
MboI GATC 4 cut(s) 185, 217, 341, 817
MboII GAAGA 2 cut(s) 67, 773
MfeI CAATTG 1 cut(s) 335
MluCI AATT 5 cut(s) 335, 648, 671, 720, 790
MlyI GAGTC 2 cut(s) 218, 409
MmeI TCCRAC 3 cut(s) 61, 708, 809
MnlI CCTC 5 cut(s) 77, 145, 318, 429, 807
MroNI GCCGGC 1 cut(s) 303
MroXI GAANNNNTTC 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 327
MspI CCGG 6 cut(s) 180, 304, 441, 557, 573, 612
MspR9I CCNGG 9 cut(s) 94, 405, 441, 442, 558, 573, 621, 654, 762
MunI CAATTG 1 cut(s) 335
MvaI CCWGG 5 cut(s) 94, 405, 621, 654, 762
MwoI GCNNNNNNNGC 5 cut(s) 236, 309, 380, 746, 755
NaeI GCCGGC 1 cut(s) 305
NciI CCSGG 4 cut(s) 441, 442, 558, 573
NcoI CCATGG 1 cut(s) 328
NdeI CATATG 1 cut(s) 475
NdeII GATC 4 cut(s) 185, 217, 341, 817
NgoMIV GCCGGC 1 cut(s) 303
NlaIII CATG 5 cut(s) 332, 397, 431, 526, 665
NlaIV GGNNCC 2 cut(s) 249, 682
NmuCI GTSAC 1 cut(s) 205
PaeR7I CTCGAG 1 cut(s) 149
PcsI WCGNNNNNNNCGW 3 cut(s) 65, 156, 165
PdiI GCCGGC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 4 cut(s) 22, 253, 526, 778
PflMI CCANNNNNTGG 1 cut(s) 359
PfoI TCCNGGA 1 cut(s) 760
PkrI GCNGC 4 cut(s) 117, 122, 385, 751
PleI GAGTC 2 cut(s) 218, 408
PpsI GAGTC 2 cut(s) 218, 408
PshAI GACNNNNGTC 1 cut(s) 71
Psp6I CCWGG 5 cut(s) 92, 403, 619, 652, 760
PspGI CCWGG 5 cut(s) 92, 403, 619, 652, 760
PspN4I GGNNCC 2 cut(s) 249, 682
PspPI GGNCC 5 cut(s) 237, 247, 479, 515, 681
PspXI VCTCGAGB 1 cut(s) 149
PstI CTGCAG 2 cut(s) 742, 829
RigI GGCCGGCC 1 cut(s) 307
RsaI GTAC 4 cut(s) 137, 467, 548, 555
RsaNI GTAC 4 cut(s) 136, 466, 547, 554
RseI CAYNNNNRTG 1 cut(s) 327
SatI GCNGC 4 cut(s) 116, 121, 384, 750
Sau3AI GATC 4 cut(s) 185, 217, 341, 817
Sau96I GGNCC 5 cut(s) 237, 247, 479, 515, 681
SbfI CCTGCAGG 1 cut(s) 742
SchI GAGTC 2 cut(s) 218, 409
ScrFI CCNGG 9 cut(s) 94, 405, 441, 442, 558, 573, 621, 654, 762
SdaI CCTGCAGG 1 cut(s) 742
SfaNI GCATC 1 cut(s) 707
SfcI CTRYAG 2 cut(s) 738, 825
Sfr274I CTCGAG 1 cut(s) 149
SinI GGWCC 4 cut(s) 247, 479, 515, 681
SlaI CTCGAG 1 cut(s) 149
SmaI CCCGGG 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse8387I CCTGCAGG 1 cut(s) 742
Sse9I AATT 5 cut(s) 335, 648, 671, 720, 790
SsiI CCGC 3 cut(s) 32, 121, 245
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 9 cut(s) 92, 403, 439, 440, 556, 571, 619, 652, 760
StyI CCWWGG 2 cut(s) 328, 358
TaaI ACNGT 5 cut(s) 284, 515, 551, 565, 634
TaiI ACGT 2 cut(s) 65, 690
TaqI TCGA 2 cut(s) 129, 150
TasI AATT 5 cut(s) 335, 648, 671, 720, 790
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 4 cut(s) 22, 253, 526, 778
TscAI CASTG 2 cut(s) 682, 697
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 3 cut(s) 115, 383, 749
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 539
TspMI CCCGGG 1 cut(s) 440
TspRI CASTG 2 cut(s) 682, 697
Van91I CCANNNNNTGG 1 cut(s) 359
VpaK11BI GGWCC 4 cut(s) 247, 479, 515, 681
XapI RAATTY 1 cut(s) 648
XhoI CTCGAG 1 cut(s) 149
XmaI CCCGGG 1 cut(s) 440
XmiI GTMKAC 3 cut(s) 492, 510, 626
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.