RchiOBHm_Chr2g0096781

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001423
Physical Location & Seq
Forward (+)
9522367 .. 9526106
3740 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47167

Sequence Viewer

Length: 852 bp
ATGGCTTACCCACAACAACAACAACAACAACAACAGAATCAACAACAACAGCAGCTGTTCAATTCGCCGTTCGGGGACACGACGTTGACGAAGGTCTTCGTCGGAGGGCTGGCCTGGGAGACCCAGAGCGAGACGCTCCGCCGCCACTTCGAGCAGTACGGCGATATACTCGAGGCCGTCGTCATCACCGATAAGAACACCGCCCGATCCAAAGGCTATGGCTTTGTCACATTTCGTGATCCCGACTCTGCAAGAAGGGCCTGTGCGGACCCCAATCCTGTTATTGATGGCCGCAGGGCTAACTGTAATCTTGCTTCTCTAGGCCGCCCTCGCCCATCATTCCATTTCCCCGGGCAACTGAGATCACCAGCGCCAATCCTCGGTCGTCTGCAAGCTCCAAGAGCTGCTTACGTGGGGAGTCCTGGTTATCACCACCCTCTTTCTCATGCTTATCAGCCCGGGTTTGTTTACCCTTCTTATGGGTACACAGCATATGGACCTGAATATGTCTACCCACAGCAGGGTGTCTATAGTCCGTACATGAATCAGCAATACCTTCAGATGTATGGTGTACCGGGGACAGTCAACCCCGGTGTATATCCTTACGGACAAGCGGGTCATTCTCTTTCCGGCAATCCTGCGTATACGGCGGTTCAAAGCTATGGAATTCCAGGCCATCATATAATGCAATTCACTGGGTCCAACGTCAGTGGAGCATCACCAGTTGCCCTTCCCACAATTCAAACACCATATCCTGCAGGTATAGCTGCACCAGCTCCAGGACAGGCACAACTTTTACTTCCTACTAATTCTCCTCAATTCACCAGCAGTTCTGATCAAACTGCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

283

Amino Acids

30.76

Weight (kDa)

8.76

Isoelectric Point (pI)

61.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 32 - 89 9e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 615
Acc36I ACCTGC 1 cut(s) 749
AccI GTMKAC 2 cut(s) 510, 644
AciI CCGC 8 cut(s) 139, 142, 201, 266, 292, 325, 614, 650
AclWI GGATC 2 cut(s) 201, 233
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 666
AcuI CTGAAG 1 cut(s) 542
AfaI GTAC 4 cut(s) 158, 485, 539, 573
AfiI CCNNNNNNNGG 5 cut(s) 380, 479, 520, 521, 779
AgsI TTSAA 3 cut(s) 61, 656, 743
AjnI CCWGG 4 cut(s) 113, 421, 670, 778
AluBI AGCT 6 cut(s) 55, 395, 404, 660, 767, 776
AluI AGCT 6 cut(s) 55, 395, 404, 660, 767, 776
Alw26I GTCTC 2 cut(s) 113, 125
AlwI GGATC 2 cut(s) 201, 233
AlwNI CAGNNNCTG 1 cut(s) 55
Ama87I CYCGRG 3 cut(s) 170, 350, 458
AoxI GGCC 6 cut(s) 111, 174, 258, 289, 322, 673
ApeKI GCWGC 3 cut(s) 52, 404, 767
ApoI RAATTY 1 cut(s) 666
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 373
AspS9I GGNCC 4 cut(s) 258, 268, 497, 699
AsuC2I CCSGG 6 cut(s) 351, 352, 459, 460, 576, 591
AsuHPI GGTGA 5 cut(s) 178, 357, 422, 711, 814
AvaI CYCGRG 3 cut(s) 170, 350, 458
AvaII GGWCC 3 cut(s) 268, 497, 699
BarI GAAGNNNNNNTAC 2 cut(s) 298, 330
BbsI GAAGAC 1 cut(s) 88
BbvI GCAGC 3 cut(s) 64, 391, 754
BccI CCATC 3 cut(s) 281, 343, 684
BceAI ACGGC 4 cut(s) 52, 161, 175, 663
BciT130I CCWGG 4 cut(s) 115, 423, 672, 780
BclI TGATCA 1 cut(s) 835
BcnI CCSGG 6 cut(s) 351, 352, 459, 460, 576, 591
BcoDI GTCTC 2 cut(s) 113, 125
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 3 cut(s) 529, 756, 843
BfoI RGCGCY 1 cut(s) 374
BfuAI ACCTGC 1 cut(s) 749
BisI GCNGC 6 cut(s) 53, 142, 292, 325, 405, 768
BlsI GCNGC 6 cut(s) 54, 143, 293, 326, 406, 769
Bme18I GGWCC 3 cut(s) 268, 497, 699
BmeT110I CYCGRG 3 cut(s) 170, 350, 458
BmgT120I GGNCC 4 cut(s) 258, 268, 497, 699
BmiI GGNNCC 2 cut(s) 270, 700
BmrI ACTGGG 1 cut(s) 705
BmsI GCATC 1 cut(s) 725
BmuI ACTGGG 1 cut(s) 705
BoxI GACNNNNGTC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 762
BpuMI CCSGG 6 cut(s) 351, 352, 459, 460, 576, 591
BsaAI YACGTR 1 cut(s) 412
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 7 cut(s) 114, 349, 350, 379, 458, 575, 589
BsaXI ACNNNNNCTCC 4 cut(s) 409, 439, 796, 826
Bsc4I CCNNNNNNNGG 5 cut(s) 380, 479, 520, 521, 779
Bse1I ACTGG 2 cut(s) 700, 722
BseBI CCWGG 4 cut(s) 115, 423, 672, 780
BseDI CCNNGG 7 cut(s) 114, 349, 350, 379, 458, 575, 589
BseLI CCNNNNNNNGG 5 cut(s) 380, 479, 520, 521, 779
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 2 cut(s) 700, 722
BseRI GAGGAG 1 cut(s) 804
BseXI GCAGC 3 cut(s) 64, 391, 754
BsgI GTGCAG 1 cut(s) 753
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 6 cut(s) 113, 176, 260, 291, 324, 675
BsiEI CGRYCG 1 cut(s) 385
BsiHKCI CYCGRG 3 cut(s) 170, 350, 458
BsiSI CCGG 5 cut(s) 351, 459, 575, 591, 630
BslFI GGGAC 2 cut(s) 89, 592
BslI CCNNNNNNNGG 5 cut(s) 380, 479, 520, 521, 779
BsmAI GTCTC 2 cut(s) 113, 125
BsmBI CGTCTC 1 cut(s) 125
BsmFI GGGAC 2 cut(s) 89, 592
BsnI GGCC 6 cut(s) 113, 176, 260, 291, 324, 675
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 3 cut(s) 170, 350, 458
Bsp143I GATC 4 cut(s) 206, 238, 362, 835
BspACI CCGC 8 cut(s) 139, 142, 201, 266, 292, 325, 614, 650
BspANI GGCC 6 cut(s) 113, 176, 260, 291, 324, 675
BspCNI CTCAG 1 cut(s) 351
BspLI GGNNCC 2 cut(s) 270, 700
BspMAI CTGCAG 2 cut(s) 760, 847
BspMI ACCTGC 1 cut(s) 749
BspPI GGATC 2 cut(s) 201, 233
BspTNI GGTCTC 1 cut(s) 113
BsrI ACTGG 2 cut(s) 700, 722
BssECI CCNNGG 7 cut(s) 114, 349, 350, 379, 458, 575, 589
BssMI GATC 4 cut(s) 206, 238, 362, 835
BssNAI GTATAC 1 cut(s) 645
Bst1107I GTATAC 1 cut(s) 645
Bst2UI CCWGG 4 cut(s) 115, 423, 672, 780
Bst4CI ACNGT 2 cut(s) 305, 583
BstBAI YACGTR 1 cut(s) 412
BstC8I GCNNGC 2 cut(s) 111, 393
BstDEI CTNAG 1 cut(s) 359
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 4 cut(s) 209, 241, 365, 838
BstMAI GTCTC 2 cut(s) 113, 125
BstMBI GATC 4 cut(s) 206, 238, 362, 835
BstMCI CGRYCG 1 cut(s) 385
BstMWI GCNNNNNNNGC 6 cut(s) 257, 330, 401, 647, 764, 773
BstNI CCWGG 4 cut(s) 115, 423, 672, 780
BstPAI GACNNNNGTC 1 cut(s) 92
BstSFI CTRYAG 3 cut(s) 529, 756, 843
BstV1I GCAGC 3 cut(s) 64, 391, 754
BstV2I GAAGAC 1 cut(s) 88
BstZ17I GTATAC 1 cut(s) 645
BsuRI GGCC 6 cut(s) 113, 176, 260, 291, 324, 675
BtsIMutI CAGTG 2 cut(s) 693, 715
BveI ACCTGC 1 cut(s) 749
Cac8I GCNNGC 2 cut(s) 111, 393
CaiI CAGNNNCTG 1 cut(s) 55
CfoI GCGC 1 cut(s) 373
Cfr13I GGNCC 4 cut(s) 258, 268, 497, 699
Cfr9I CCCGGG 2 cut(s) 350, 458
CseI GACGC 1 cut(s) 142
Csp6I GTAC 4 cut(s) 157, 484, 538, 572
CspCI CAANNNNNGTGG 2 cut(s) 691, 726
CviAII CATG 2 cut(s) 446, 541
CviQI GTAC 4 cut(s) 157, 484, 538, 572
DdeI CTNAG 1 cut(s) 359
DpnI GATC 4 cut(s) 208, 240, 364, 837
DpnII GATC 4 cut(s) 206, 238, 362, 835
DrdI GACNNNNNNGTC 1 cut(s) 615
DseDI GACNNNNNNGTC 1 cut(s) 615
EaeI YGGCCR 1 cut(s) 289
EciI GGCGGA 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 3 cut(s) 268, 497, 699
Eco57I CTGAAG 1 cut(s) 542
Eco88I CYCGRG 3 cut(s) 170, 350, 458
EcoO109I RGGNCCY 1 cut(s) 258
EcoRI GAATTC 1 cut(s) 666
EcoRII CCWGG 4 cut(s) 113, 421, 670, 778
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 2 cut(s) 449, 544
FalI AAGNNNNNCTT 2 cut(s) 391, 423
FaqI GGGAC 2 cut(s) 89, 592
FatI CATG 2 cut(s) 445, 540
FauI CCCGC 1 cut(s) 607
FauNDI CATATG 1 cut(s) 493
FbaI TGATCA 1 cut(s) 835
FblI GTMKAC 2 cut(s) 510, 644
Fnu4HI GCNGC 6 cut(s) 53, 142, 292, 325, 405, 768
Fsp4HI GCNGC 6 cut(s) 53, 142, 292, 325, 405, 768
FspBI CTAG 1 cut(s) 320
GlaI GCGC 1 cut(s) 372
GluI GCNGC 6 cut(s) 53, 142, 292, 325, 405, 768
GsuI CTGGAG 1 cut(s) 762
HaeII RGCGCY 1 cut(s) 374
HaeIII GGCC 6 cut(s) 113, 176, 260, 291, 324, 675
HapII CCGG 5 cut(s) 351, 459, 575, 591, 630
HgaI GACGC 1 cut(s) 142
HhaI GCGC 1 cut(s) 373
Hin1II CATG 2 cut(s) 449, 544
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HincII GTYRAC 2 cut(s) 87, 586
HindII GTYRAC 2 cut(s) 87, 586
HinfI GANTC 4 cut(s) 37, 245, 418, 544
HpaII CCGG 5 cut(s) 351, 459, 575, 591, 630
HphI GGTGA 5 cut(s) 178, 357, 422, 711, 814
Hpy166II GTNNAC 7 cut(s) 87, 469, 486, 511, 572, 586, 645
Hpy188I TCNGA 3 cut(s) 104, 561, 835
Hpy188III TCNNGA 2 cut(s) 236, 242
Hpy8I GTNNAC 7 cut(s) 87, 469, 486, 511, 572, 586, 645
Hpy99I CGWCG 3 cut(s) 85, 104, 182
HpyAV CCTTC 5 cut(s) 85, 249, 483, 566, 740
HpyCH4III ACNGT 2 cut(s) 305, 583
HpyCH4IV ACGT 3 cut(s) 83, 411, 705
HpyCH4V TGCA 6 cut(s) 251, 391, 688, 758, 770, 845
HpyF10VI GCNNNNNNNGC 6 cut(s) 257, 330, 401, 647, 764, 773
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 3 cut(s) 83, 411, 705
Hsp92II CATG 2 cut(s) 449, 544
HspAI GCGC 1 cut(s) 371
Ksp22I TGATCA 1 cut(s) 835
Kzo9I GATC 4 cut(s) 206, 238, 362, 835
LmnI GCTCC 4 cut(s) 141, 400, 713, 781
Lsp1109I GCAGC 3 cut(s) 64, 391, 754
LweI GCATC 1 cut(s) 725
MaeI CTAG 1 cut(s) 320
MaeII ACGT 3 cut(s) 83, 411, 705
MaeIII GTNAC 1 cut(s) 226
MalI GATC 4 cut(s) 208, 240, 364, 837
MboI GATC 4 cut(s) 206, 238, 362, 835
MboII GAAGA 1 cut(s) 88
MluCI AATT 6 cut(s) 61, 666, 689, 738, 808, 818
MlyI GAGTC 2 cut(s) 239, 427
MmeI TCCRAC 2 cut(s) 82, 726
MnlI CCTC 6 cut(s) 98, 166, 339, 389, 447, 825
MroXI GAANNNNTTC 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 5 cut(s) 351, 459, 575, 591, 630
MvaI CCWGG 4 cut(s) 115, 423, 672, 780
MwoI GCNNNNNNNGC 6 cut(s) 257, 330, 401, 647, 764, 773
NciI CCSGG 6 cut(s) 351, 352, 459, 460, 576, 591
NdeI CATATG 1 cut(s) 493
NdeII GATC 4 cut(s) 206, 238, 362, 835
NlaIII CATG 2 cut(s) 449, 544
NlaIV GGNNCC 2 cut(s) 270, 700
NmuCI GTSAC 1 cut(s) 226
PaeR7I CTCGAG 1 cut(s) 170
PcsI WCGNNNNNNNCGW 3 cut(s) 86, 177, 186
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 37, 544
PfoI TCCNGGA 1 cut(s) 778
PkrI GCNGC 6 cut(s) 54, 143, 293, 326, 406, 769
PleI GAGTC 2 cut(s) 239, 426
PpsI GAGTC 2 cut(s) 239, 426
Ppu21I YACGTR 1 cut(s) 412
PshAI GACNNNNGTC 1 cut(s) 92
Psp6I CCWGG 4 cut(s) 113, 421, 670, 778
PspGI CCWGG 4 cut(s) 113, 421, 670, 778
PspN4I GGNNCC 2 cut(s) 270, 700
PspPI GGNCC 4 cut(s) 258, 268, 497, 699
PspXI VCTCGAGB 1 cut(s) 170
PstI CTGCAG 2 cut(s) 760, 847
PstNI CAGNNNCTG 1 cut(s) 55
PvuII CAGCTG 1 cut(s) 55
RsaI GTAC 4 cut(s) 158, 485, 539, 573
RsaNI GTAC 4 cut(s) 157, 484, 538, 572
SatI GCNGC 6 cut(s) 53, 142, 292, 325, 405, 768
Sau3AI GATC 4 cut(s) 206, 238, 362, 835
Sau96I GGNCC 4 cut(s) 258, 268, 497, 699
SbfI CCTGCAGG 1 cut(s) 760
SchI GAGTC 2 cut(s) 239, 427
SdaI CCTGCAGG 1 cut(s) 760
SfaNI GCATC 1 cut(s) 725
SfcI CTRYAG 3 cut(s) 529, 756, 843
Sfr274I CTCGAG 1 cut(s) 170
SinI GGWCC 3 cut(s) 268, 497, 699
SlaI CTCGAG 1 cut(s) 170
SmaI CCCGGG 2 cut(s) 352, 460
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse8387I CCTGCAGG 1 cut(s) 760
Sse9I AATT 6 cut(s) 61, 666, 689, 738, 808, 818
SsiI CCGC 8 cut(s) 139, 142, 201, 266, 292, 325, 614, 650
SspMI CTAG 1 cut(s) 320
TaaI ACNGT 2 cut(s) 305, 583
TaiI ACGT 3 cut(s) 86, 414, 708
TaqI TCGA 2 cut(s) 150, 171
TaqII GACCGA 1 cut(s) 371
TasI AATT 6 cut(s) 61, 666, 689, 738, 808, 818
TauI GCSGC 3 cut(s) 144, 294, 327
TfiI GAWTC 2 cut(s) 37, 544
TscAI CASTG 2 cut(s) 700, 715
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 3 cut(s) 52, 404, 767
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 557
TspGWI ACGGA 2 cut(s) 525, 621
TspMI CCCGGG 2 cut(s) 350, 458
TspRI CASTG 2 cut(s) 700, 715
VpaK11BI GGWCC 3 cut(s) 268, 497, 699
XapI RAATTY 1 cut(s) 666
XhoI CTCGAG 1 cut(s) 170
XmaI CCCGGG 2 cut(s) 350, 458
XmiI GTMKAC 2 cut(s) 510, 644
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.