Rh2DG111600

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001423
Physical Location & Seq
Forward (+)
9182758 .. 9186541
3784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG111600.1

Sequence Viewer

Length: 561 bp
ATGGCTTACCCACAACAACAACAACAACAACAACAGAATCAACAACAACAGCAGCTGTTCAATTCGCCGTTCGGGGACACGACGTTGACGAAGGTCTTCGTCGGAGGGCTGGCCTGGGAGACCCAGAGCGAGACGCTCCGCCGCCACTTCGAGCAGTACGGCGATATACTCGAGGCCGTCGTCATCACCGATAAGAACACCGCCCGATCCAAAGGCTATGGCTTTGTCACATTTCGTGATCCCGACTCTGCAAGAAGGGCCTGTGCGGACCCCAATCCTGTTATTGATGGCCGCAGGGCTAACTGTAATCTTGCTTCTCTAGGCCGCCCTCGCCCATCATTCCATTTCCCCGGGCAACTGAGATCACCAGCGCCAATCCTCGGTCGTCTGCAAGCTCCAAGAGCTGCTTACGTGGGGAGTCCTGGTTATCACCACCCTCTTTCTCATGCTTATCAGCCCGGGTTTGTTTACCCTTCTTATGGGTACACAGCATATGGACCTGAATATGTCTACCCACAGGTGAATATTGTGTACATAATAACAGATTTTATATGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

186

Amino Acids

21.03

Weight (kDa)

8.53

Isoelectric Point (pI)

63.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 32 - 89 4.1e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 510
AciI CCGC 6 cut(s) 139, 142, 201, 266, 292, 325
AclWI GGATC 2 cut(s) 201, 233
AcoI YGGCCR 1 cut(s) 289
AfaI GTAC 3 cut(s) 158, 485, 533
AfiI CCNNNNNNNGG 2 cut(s) 380, 479
AgsI TTSAA 1 cut(s) 61
AjnI CCWGG 2 cut(s) 113, 421
AluBI AGCT 3 cut(s) 55, 395, 404
AluI AGCT 3 cut(s) 55, 395, 404
Alw26I GTCTC 2 cut(s) 113, 125
AlwI GGATC 2 cut(s) 201, 233
AlwNI CAGNNNCTG 1 cut(s) 55
Ama87I CYCGRG 3 cut(s) 170, 350, 458
AoxI GGCC 5 cut(s) 111, 174, 258, 289, 322
ApeKI GCWGC 2 cut(s) 52, 404
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 373
AspS9I GGNCC 3 cut(s) 258, 268, 497
AsuC2I CCSGG 4 cut(s) 351, 352, 459, 460
AsuHPI GGTGA 4 cut(s) 178, 357, 422, 532
AvaI CYCGRG 3 cut(s) 170, 350, 458
AvaII GGWCC 2 cut(s) 268, 497
BarI GAAGNNNNNNTAC 2 cut(s) 298, 330
BbsI GAAGAC 1 cut(s) 88
BbvI GCAGC 2 cut(s) 64, 391
BccI CCATC 2 cut(s) 281, 343
BceAI ACGGC 3 cut(s) 52, 161, 175
BciT130I CCWGG 2 cut(s) 115, 423
BcnI CCSGG 4 cut(s) 351, 352, 459, 460
BcoDI GTCTC 2 cut(s) 113, 125
BfaI CTAG 1 cut(s) 320
BfoI RGCGCY 1 cut(s) 374
BisI GCNGC 5 cut(s) 53, 142, 292, 325, 405
BlsI GCNGC 5 cut(s) 54, 143, 293, 326, 406
Bme1390I CCNGG 6 cut(s) 115, 351, 352, 423, 459, 460
Bme18I GGWCC 2 cut(s) 268, 497
BmeT110I CYCGRG 3 cut(s) 170, 350, 458
BmgT120I GGNCC 3 cut(s) 258, 268, 497
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 6 cut(s) 115, 351, 352, 423, 459, 460
BoxI GACNNNNGTC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 88
BpuMI CCSGG 4 cut(s) 351, 352, 459, 460
BsaAI YACGTR 1 cut(s) 412
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 5 cut(s) 114, 349, 350, 379, 458
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 479
BseBI CCWGG 2 cut(s) 115, 423
BseDI CCNNGG 5 cut(s) 114, 349, 350, 379, 458
BseLI CCNNNNNNNGG 2 cut(s) 380, 479
BseMII CTCAG 1 cut(s) 350
BseXI GCAGC 2 cut(s) 64, 391
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 5 cut(s) 113, 176, 260, 291, 324
BsiEI CGRYCG 1 cut(s) 385
BsiHKCI CYCGRG 3 cut(s) 170, 350, 458
BsiSI CCGG 2 cut(s) 351, 459
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 380, 479
BsmAI GTCTC 2 cut(s) 113, 125
BsmBI CGTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 5 cut(s) 113, 176, 260, 291, 324
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 3 cut(s) 170, 350, 458
Bsp1407I TGTACA 1 cut(s) 531
Bsp143I GATC 3 cut(s) 206, 238, 362
BspACI CCGC 6 cut(s) 139, 142, 201, 266, 292, 325
BspANI GGCC 5 cut(s) 113, 176, 260, 291, 324
BspCNI CTCAG 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 2 cut(s) 201, 233
BspTNI GGTCTC 1 cut(s) 113
BsrGI TGTACA 1 cut(s) 531
BssECI CCNNGG 5 cut(s) 114, 349, 350, 379, 458
BssMI GATC 3 cut(s) 206, 238, 362
Bst2UI CCWGG 2 cut(s) 115, 423
Bst4CI ACNGT 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 531
BstBAI YACGTR 1 cut(s) 412
BstC8I GCNNGC 2 cut(s) 111, 393
BstDEI CTNAG 1 cut(s) 359
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 3 cut(s) 209, 241, 365
BstMAI GTCTC 2 cut(s) 113, 125
BstMBI GATC 3 cut(s) 206, 238, 362
BstMCI CGRYCG 1 cut(s) 385
BstMWI GCNNNNNNNGC 3 cut(s) 257, 330, 401
BstNI CCWGG 2 cut(s) 115, 423
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 6 cut(s) 113, 349, 350, 421, 457, 458
BstV1I GCAGC 2 cut(s) 64, 391
BstV2I GAAGAC 1 cut(s) 88
BsuRI GGCC 5 cut(s) 113, 176, 260, 291, 324
Cac8I GCNNGC 2 cut(s) 111, 393
CaiI CAGNNNCTG 1 cut(s) 55
CfoI GCGC 1 cut(s) 373
Cfr13I GGNCC 3 cut(s) 258, 268, 497
Cfr9I CCCGGG 2 cut(s) 350, 458
CseI GACGC 1 cut(s) 142
Csp6I GTAC 3 cut(s) 157, 484, 532
CviAII CATG 1 cut(s) 446
CviQI GTAC 3 cut(s) 157, 484, 532
DdeI CTNAG 1 cut(s) 359
DpnI GATC 3 cut(s) 208, 240, 364
DpnII GATC 3 cut(s) 206, 238, 362
EaeI YGGCCR 1 cut(s) 289
EciI GGCGGA 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 268, 497
Eco88I CYCGRG 3 cut(s) 170, 350, 458
EcoO109I RGGNCCY 1 cut(s) 258
EcoRII CCWGG 2 cut(s) 113, 421
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 1 cut(s) 449
FalI AAGNNNNNCTT 2 cut(s) 391, 423
FaqI GGGAC 1 cut(s) 89
FatI CATG 1 cut(s) 445
FauNDI CATATG 1 cut(s) 493
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 5 cut(s) 53, 142, 292, 325, 405
Fsp4HI GCNGC 5 cut(s) 53, 142, 292, 325, 405
FspBI CTAG 1 cut(s) 320
GlaI GCGC 1 cut(s) 372
GluI GCNGC 5 cut(s) 53, 142, 292, 325, 405
HaeII RGCGCY 1 cut(s) 374
HaeIII GGCC 5 cut(s) 113, 176, 260, 291, 324
HapII CCGG 2 cut(s) 351, 459
HgaI GACGC 1 cut(s) 142
HhaI GCGC 1 cut(s) 373
Hin1II CATG 1 cut(s) 449
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 3 cut(s) 37, 245, 418
HpaII CCGG 2 cut(s) 351, 459
HphI GGTGA 4 cut(s) 178, 357, 422, 532
Hpy166II GTNNAC 5 cut(s) 87, 469, 486, 511, 532
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 2 cut(s) 236, 242
Hpy8I GTNNAC 5 cut(s) 87, 469, 486, 511, 532
Hpy99I CGWCG 3 cut(s) 85, 104, 182
HpyAV CCTTC 3 cut(s) 85, 249, 483
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 2 cut(s) 83, 411
HpyCH4V TGCA 2 cut(s) 251, 391
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 330, 401
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 2 cut(s) 83, 411
Hsp92II CATG 1 cut(s) 449
HspAI GCGC 1 cut(s) 371
Kzo9I GATC 3 cut(s) 206, 238, 362
LmnI GCTCC 2 cut(s) 141, 400
Lsp1109I GCAGC 2 cut(s) 64, 391
MaeI CTAG 1 cut(s) 320
MaeII ACGT 2 cut(s) 83, 411
MaeIII GTNAC 1 cut(s) 226
MalI GATC 3 cut(s) 208, 240, 364
MboI GATC 3 cut(s) 206, 238, 362
MboII GAAGA 1 cut(s) 88
MluCI AATT 1 cut(s) 61
MlyI GAGTC 2 cut(s) 239, 427
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 5 cut(s) 98, 166, 339, 389, 447
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 1 cut(s) 559
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 2 cut(s) 351, 459
MspR9I CCNGG 6 cut(s) 115, 351, 352, 423, 459, 460
MvaI CCWGG 2 cut(s) 115, 423
MwoI GCNNNNNNNGC 3 cut(s) 257, 330, 401
NciI CCSGG 4 cut(s) 351, 352, 459, 460
NdeI CATATG 1 cut(s) 493
NdeII GATC 3 cut(s) 206, 238, 362
NlaIII CATG 1 cut(s) 449
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 226
PaeR7I CTCGAG 1 cut(s) 170
PcsI WCGNNNNNNNCGW 3 cut(s) 86, 177, 186
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 5 cut(s) 54, 143, 293, 326, 406
PleI GAGTC 2 cut(s) 239, 426
PpsI GAGTC 2 cut(s) 239, 426
Ppu21I YACGTR 1 cut(s) 412
PshAI GACNNNNGTC 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 113, 421
PspGI CCWGG 2 cut(s) 113, 421
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 3 cut(s) 258, 268, 497
PspXI VCTCGAGB 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 55
PvuII CAGCTG 1 cut(s) 55
RsaI GTAC 3 cut(s) 158, 485, 533
RsaNI GTAC 3 cut(s) 157, 484, 532
SaqAI TTAA 1 cut(s) 559
SatI GCNGC 5 cut(s) 53, 142, 292, 325, 405
Sau3AI GATC 3 cut(s) 206, 238, 362
Sau96I GGNCC 3 cut(s) 258, 268, 497
SchI GAGTC 2 cut(s) 239, 427
ScrFI CCNGG 6 cut(s) 115, 351, 352, 423, 459, 460
SetI ASST 8 cut(s) 57, 86, 96, 397, 406, 414, 502, 522
Sfr274I CTCGAG 1 cut(s) 170
SinI GGWCC 2 cut(s) 268, 497
SlaI CTCGAG 1 cut(s) 170
SmaI CCCGGG 2 cut(s) 352, 460
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 61
SsiI CCGC 6 cut(s) 139, 142, 201, 266, 292, 325
SspI AATATT 1 cut(s) 526
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 6 cut(s) 113, 349, 350, 421, 457, 458
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 2 cut(s) 86, 414
TaqI TCGA 2 cut(s) 150, 171
TaqII GACCGA 1 cut(s) 371
TasI AATT 1 cut(s) 61
TatI WGTACW 1 cut(s) 531
TauI GCSGC 3 cut(s) 144, 294, 327
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 559
Tru9I TTAA 1 cut(s) 559
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 2 cut(s) 52, 404
Tsp45I GTSAC 1 cut(s) 226
TspMI CCCGGG 2 cut(s) 350, 458
VpaK11BI GGWCC 2 cut(s) 268, 497
XhoI CTCGAG 1 cut(s) 170
XmaI CCCGGG 2 cut(s) 350, 458
XmiI GTMKAC 1 cut(s) 510
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.