FvH4_5g37060

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008508
Physical Location & Seq
Reverse (-)
27120698 .. 27125233
4536 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37060.t2

Sequence Viewer

Length: 942 bp
ATGAGTATTGCAGTACACAGAAGACTAGTTCATTCGAAACAAGGGATACCCACTTGTGATTTTGATGTTTTTCTTGCCATGGCTCACCCACATTACCGATCACAATTCGGAGACACAACTTTTACCAAAGTGTTTGTAGGAGGTTTAGCATGGGAGACACCGACCGAGGAAATGCGAAGGTATTTCGAGCAGTTTGGAGAGATTCTTGAAGCTGTGATTATTGCTGATAAGAACACAGGAAAATCTAAAGGATATGGATTTGTGACTTTTCGTGATGCTGAATCGGCGAGGAGGTCTTGTGCTAATCCGAACCCTGTGATCGATGGAAGAAGAGCAAATTGTAACATTGCTTCATTGGGAAGGCCTAGACCTTCACCCCCTAGAGGAAGAAATCAAGGTACAAGCCCTTATCAGGGAAATGCACCACAGGCTGCACCATCCTACGGCGGAGTGCCGCCACCACCGCCACCGCCACCGCTGCCACAAGCAGCGGCAGCGGCTCCGATTATATATCCATCTTACAGCTACCCAACCTACAGTCCTGATTATGGATACCATCAACAAGCTACTATGTACAACCAACAAGTAGTTCATCATCAGCAGCCCCAGTACTACCAGCAACAACTCTATGGAGCATCATCACCTTCAACAATGGGAGCTCCATACTACTATCATCAAGGCTATTCTTTTCAATCTCCAAGGGGCTCATTTTCTCCGGTACCTCCTCAGGCGCATCGTATGCCCGCTGCGGCTTCCTATGTCTACTATCCTACGCAGCAGATGGATGCCTCCTTCTCCTCCTATCCTCCTCCAATCCTACAACCACCCCCAACATTAAGGCGTCCTCCTTTGACATCTCCTTCCGATTCACAGAATCCACAACATGCCTCTACAGAATCAGAACCTGGAGCTGCTACGTCAGATAGTCCTCCAGATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

314

Amino Acids

34.41

Weight (kDa)

8.63

Isoelectric Point (pI)

78.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 44 - 98 6.3e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 718
AccB1I GGYRCC 1 cut(s) 718
AccI GTMKAC 1 cut(s) 762
AciI CCGC 9 cut(s) 447, 455, 464, 470, 476, 491, 497, 744, 749
AcyI GRCGYC 1 cut(s) 841
AfaI GTAC 5 cut(s) 15, 400, 575, 611, 720
AfiI CCNNNNNNNGG 5 cut(s) 383, 412, 413, 443, 548
AgsI TTSAA 3 cut(s) 209, 648, 692
AhlI ACTAGT 1 cut(s) 25
AjnI CCWGG 1 cut(s) 904
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AluBI AGCT 5 cut(s) 212, 525, 566, 659, 911
AluI AGCT 5 cut(s) 212, 525, 566, 659, 911
Alw21I GWGCWC 1 cut(s) 661
Alw26I GTCTC 2 cut(s) 105, 149
AlwNI CAGNNNCTG 1 cut(s) 905
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 8 cut(s) 431, 478, 488, 494, 601, 746, 775, 911
Asp718I GGTACC 1 cut(s) 718
AspLEI GCGC 1 cut(s) 733
AsuHPI GGTGA 3 cut(s) 77, 366, 633
AsuII TTCGAA 1 cut(s) 35
AxyI CCTNAGG 1 cut(s) 726
BanI GGYRCC 1 cut(s) 718
BanII GRGCYC 2 cut(s) 661, 707
BarI GAAGNNNNNNTAC 2 cut(s) 334, 366
BbsI GAAGAC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 661
BbvI GCAGC 8 cut(s) 418, 465, 500, 506, 613, 733, 787, 898
BccI CCATC 5 cut(s) 317, 445, 523, 564, 775
BceAI ACGGC 1 cut(s) 460
BciT130I CCWGG 1 cut(s) 906
BciVI GTATCC 2 cut(s) 39, 545
BcoDI GTCTC 2 cut(s) 105, 149
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 3 cut(s) 26, 366, 381
BfmI CTRYAG 2 cut(s) 535, 891
BfuI GTATCC 2 cut(s) 39, 545
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 1 cut(s) 906
BmiI GGNNCC 2 cut(s) 501, 720
BmrFI CCNGG 1 cut(s) 906
BmrI ACTGGG 1 cut(s) 601
BmsI GCATC 4 cut(s) 265, 644, 742, 775
BmuI ACTGGG 1 cut(s) 601
BpiI GAAGAC 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 915, 927
Bpu14I TTCGAA 1 cut(s) 35
Bsa29I ATCGAT 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 841
BsaJI CCNNGG 3 cut(s) 78, 165, 698
BsaWI WCCGGW 1 cut(s) 715
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 5 cut(s) 383, 412, 413, 443, 548
Bse1I ACTGG 1 cut(s) 607
Bse21I CCTNAGG 1 cut(s) 726
Bse3DI GCAATG 1 cut(s) 345
BseBI CCWGG 1 cut(s) 906
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 3 cut(s) 78, 165, 698
BseGI GGATG 2 cut(s) 437, 790
BseLI CCNNNNNNNGG 5 cut(s) 383, 412, 413, 443, 548
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 740
BseNI ACTGG 1 cut(s) 607
BseRI GAGGAG 4 cut(s) 304, 714, 787, 798
BseXI GCAGC 8 cut(s) 418, 465, 500, 506, 613, 733, 787, 898
BsgI GTGCAG 1 cut(s) 417
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 364
BshNI GGYRCC 1 cut(s) 718
BshVI ATCGAT 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 661
BsiSI CCGG 1 cut(s) 716
BslI CCNNNNNNNGG 5 cut(s) 383, 412, 413, 443, 548
BsmAI GTCTC 2 cut(s) 105, 149
BsnI GGCC 1 cut(s) 364
Bsp119I TTCGAA 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 661, 707
Bsp1407I TGTACA 1 cut(s) 573
Bsp143I GATC 2 cut(s) 98, 318
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 9 cut(s) 447, 455, 464, 470, 476, 491, 497, 744, 749
BspANI GGCC 1 cut(s) 364
BspCNI CTCAG 1 cut(s) 739
BspDI ATCGAT 1 cut(s) 321
BspLI GGNNCC 2 cut(s) 501, 720
BspQI GCTCTTC 1 cut(s) 325
BspT104I TTCGAA 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 718
BsrDI GCAATG 1 cut(s) 345
BsrGI TGTACA 1 cut(s) 573
BsrI ACTGG 1 cut(s) 607
BssECI CCNNGG 3 cut(s) 78, 165, 698
BssMI GATC 2 cut(s) 98, 318
BssNI GRCGYC 1 cut(s) 841
BssT1I CCWWGG 2 cut(s) 78, 698
Bst2UI CCWGG 1 cut(s) 906
Bst4CI ACNGT 1 cut(s) 539
Bst6I CTCTTC 1 cut(s) 325
BstACI GRCGYC 1 cut(s) 841
BstAPI GCANNNNNTGC 1 cut(s) 739
BstAUI TGTACA 1 cut(s) 573
BstBI TTCGAA 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 744
BstDEI CTNAG 1 cut(s) 726
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 2 cut(s) 437, 790
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 2 cut(s) 101, 321
BstMAI GTCTC 2 cut(s) 105, 149
BstMBI GATC 2 cut(s) 98, 318
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 7 cut(s) 284, 428, 463, 478, 494, 497, 739
BstNI CCWGG 1 cut(s) 906
BstNSI RCATGY 1 cut(s) 887
BstSCI CCNGG 1 cut(s) 904
BstSFI CTRYAG 2 cut(s) 535, 891
BstV1I GCAGC 8 cut(s) 418, 465, 500, 506, 613, 733, 787, 898
BstV2I GAAGAC 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 321
Bsu36I CCTNAGG 1 cut(s) 726
BsuI GTATCC 2 cut(s) 39, 545
BsuRI GGCC 1 cut(s) 364
BsuTUI ATCGAT 1 cut(s) 321
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 2 cut(s) 437, 790
Cac8I GCNNGC 1 cut(s) 744
CaiI CAGNNNCTG 1 cut(s) 905
CfoI GCGC 1 cut(s) 733
ClaI ATCGAT 1 cut(s) 321
CseI GACGC 1 cut(s) 830
Csp6I GTAC 5 cut(s) 14, 399, 574, 610, 719
CviAII CATG 3 cut(s) 79, 150, 884
CviQI GTAC 5 cut(s) 14, 399, 574, 610, 719
DdeI CTNAG 1 cut(s) 726
DpnI GATC 2 cut(s) 100, 320
DpnII GATC 2 cut(s) 98, 318
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
EciI GGCGGA 1 cut(s) 462
Ecl136II GAGCTC 1 cut(s) 659
Eco130I CCWWGG 2 cut(s) 78, 698
Eco147I AGGCCT 1 cut(s) 364
Eco24I GRGCYC 2 cut(s) 661, 707
Eco32I GATATC 1 cut(s) 937
Eco53kI GAGCTC 1 cut(s) 659
Eco81I CCTNAGG 1 cut(s) 726
EcoICRI GAGCTC 1 cut(s) 659
EcoRII CCWGG 1 cut(s) 904
EcoRV GATATC 1 cut(s) 937
EcoT14I CCWWGG 2 cut(s) 78, 698
EcoT38I GRGCYC 2 cut(s) 661, 707
ErhI CCWWGG 2 cut(s) 78, 698
FaeI CATG 3 cut(s) 82, 153, 887
FatI CATG 3 cut(s) 78, 149, 883
FauI CCCGC 1 cut(s) 751
FblI GTMKAC 1 cut(s) 762
FokI GGATG 2 cut(s) 424, 797
FriOI GRGCYC 2 cut(s) 661, 707
FspBI CTAG 3 cut(s) 26, 366, 381
GlaI GCGC 1 cut(s) 732
GsuI CTGGAG 2 cut(s) 915, 927
HaeIII GGCC 1 cut(s) 364
HapII CCGG 1 cut(s) 716
HgaI GACGC 1 cut(s) 830
HhaI GCGC 1 cut(s) 733
Hin1I GRCGYC 1 cut(s) 841
Hin1II CATG 3 cut(s) 82, 153, 887
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HinfI GANTC 5 cut(s) 202, 281, 866, 874, 896
HpaII CCGG 1 cut(s) 716
HphI GGTGA 3 cut(s) 77, 366, 633
Hpy166II GTNNAC 2 cut(s) 16, 763
Hpy188I TCNGA 6 cut(s) 110, 309, 504, 865, 901, 922
Hpy188III TCNNGA 4 cut(s) 206, 272, 542, 932
Hpy8I GTNNAC 2 cut(s) 16, 763
HpyAV CCTTC 6 cut(s) 171, 354, 381, 654, 802, 870
HpyCH4III ACNGT 1 cut(s) 539
HpyCH4IV ACGT 1 cut(s) 917
HpyCH4V TGCA 3 cut(s) 11, 422, 434
HpyF10VI GCNNNNNNNGC 7 cut(s) 284, 428, 463, 478, 494, 497, 739
HpyF3I CTNAG 1 cut(s) 726
HpySE526I ACGT 1 cut(s) 917
Hsp92I GRCGYC 1 cut(s) 841
Hsp92II CATG 3 cut(s) 82, 153, 887
HspAI GCGC 1 cut(s) 731
KpnI GGTACC 1 cut(s) 722
Kzo9I GATC 2 cut(s) 98, 318
LguI GCTCTTC 1 cut(s) 325
LmnI GCTCC 5 cut(s) 505, 632, 656, 664, 908
Lsp1109I GCAGC 8 cut(s) 418, 465, 500, 506, 613, 733, 787, 898
LweI GCATC 4 cut(s) 265, 644, 742, 775
MaeI CTAG 3 cut(s) 26, 366, 381
MaeII ACGT 1 cut(s) 917
MaeIII GTNAC 2 cut(s) 262, 341
MalI GATC 2 cut(s) 100, 320
MboI GATC 2 cut(s) 98, 318
MboII GAAGA 4 cut(s) 33, 339, 342, 399
MhlI GDGCHC 2 cut(s) 661, 707
MluCI AATT 2 cut(s) 104, 337
MseI TTAA 1 cut(s) 836
MspA1I CMGCKG 4 cut(s) 478, 491, 497, 746
MspI CCGG 1 cut(s) 716
MspR9I CCNGG 1 cut(s) 906
MvaI CCWGG 1 cut(s) 906
MwoI GCNNNNNNNGC 7 cut(s) 284, 428, 463, 478, 494, 497, 739
NcoI CCATGG 1 cut(s) 78
NdeII GATC 2 cut(s) 98, 318
NlaIII CATG 3 cut(s) 82, 153, 887
NlaIV GGNNCC 2 cut(s) 501, 720
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 1 cut(s) 887
NspV TTCGAA 1 cut(s) 35
PceI AGGCCT 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 325
PfeI GAWTC 5 cut(s) 202, 281, 866, 874, 896
Psp124BI GAGCTC 1 cut(s) 661
Psp6I CCWGG 1 cut(s) 904
PspGI CCWGG 1 cut(s) 904
PspN4I GGNNCC 2 cut(s) 501, 720
PstNI CAGNNNCTG 1 cut(s) 905
RsaI GTAC 5 cut(s) 15, 400, 575, 611, 720
RsaNI GTAC 5 cut(s) 14, 399, 574, 610, 719
SacI GAGCTC 1 cut(s) 661
SapI GCTCTTC 1 cut(s) 325
SaqAI TTAA 1 cut(s) 836
Sau3AI GATC 2 cut(s) 98, 318
ScaI AGTACT 1 cut(s) 611
ScrFI CCNGG 1 cut(s) 906
SduI GDGCHC 2 cut(s) 661, 707
SfaNI GCATC 4 cut(s) 265, 644, 742, 775
SfcI CTRYAG 2 cut(s) 535, 891
SfuI TTCGAA 1 cut(s) 35
SpeI ACTAGT 1 cut(s) 25
Sse9I AATT 2 cut(s) 104, 337
SseBI AGGCCT 1 cut(s) 364
SsiI CCGC 9 cut(s) 447, 455, 464, 470, 476, 491, 497, 744, 749
SspMI CTAG 3 cut(s) 26, 366, 381
SstI GAGCTC 1 cut(s) 661
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 904
StyI CCWWGG 2 cut(s) 78, 698
TaaI ACNGT 1 cut(s) 539
TaiI ACGT 1 cut(s) 920
TaqI TCGA 3 cut(s) 35, 186, 321
TaqII GACCGA 1 cut(s) 179
TasI AATT 2 cut(s) 104, 337
TatI WGTACW 3 cut(s) 13, 573, 609
TauI GCSGC 4 cut(s) 457, 494, 500, 752
TfiI GAWTC 5 cut(s) 202, 281, 866, 874, 896
Tru1I TTAA 1 cut(s) 836
Tru9I TTAA 1 cut(s) 836
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 8 cut(s) 431, 478, 488, 494, 601, 746, 775, 911
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 20, 342, 581
XceI RCATGY 1 cut(s) 887
XmiI GTMKAC 1 cut(s) 762
XspI CTAG 3 cut(s) 26, 366, 381
ZrmI AGTACT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.