Prupe.1G519300_v2.0.a1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008508
Physical Location & Seq
Forward (+)
42643480 .. 42644082
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G519300.1

Sequence Viewer

Length: 402 bp
TTTGGGGACACAACGTTTACGAAAGTGTTTGTTGGAGGGCTCGCTTGGGAGACACCAACTGATGAAATGCGTAGATACTTTCAGCAGTTTGGGGAGATTCTTGAGGCTGTCATTATTGCTGATAAGAACACTGGAAAATCTAAAGGCTATGGATTTGTGACATTTCGTGATTCGGAATCGGCAAGGAGGGCTTGTGCAAATCCAAACCCTGTGATCGATGGAAGAAGAGCAAATTGTAACATTGCTTCGTTAGGACGTCCTCGGCCTTCACCCCCGAGAGGAAGAAATCAAGCCTCCGGTCCATACCAGGGAAGTGCACCACAGGCTGCACAATCGTATGGCGGAGCGCCGCCATTGCCACCACCGCTGCCGCCACCAGCCCCTATTATATATCCACCTTAC
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

134

Amino Acids

14.45

Weight (kDa)

9.51

Isoelectric Point (pI)

61.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 259
AciI CCGC 4 cut(s) 342, 350, 365, 371
AclI AACGTT 1 cut(s) 14
AcyI GRCGYC 1 cut(s) 256
AfiI CCNNNNNNNGG 2 cut(s) 278, 308
AjnI CCWGG 1 cut(s) 306
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 44
Alw44I GTGCAC 1 cut(s) 315
Ama87I CYCGRG 1 cut(s) 274
AoxI GGCC 1 cut(s) 263
ApaLI GTGCAC 1 cut(s) 315
ApeKI GCWGC 2 cut(s) 326, 367
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 261
AvaI CYCGRG 1 cut(s) 274
AvaII GGWCC 1 cut(s) 299
BaeGI GKGCMC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 42
BarI GAAGNNNNNNTAC 2 cut(s) 229, 261
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 2 cut(s) 313, 354
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 350
BisI GCNGC 4 cut(s) 327, 350, 368, 371
BlsI GCNGC 4 cut(s) 328, 351, 369, 372
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 299
BmrFI CCNGG 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 260, 307
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 308
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 2 cut(s) 240, 353
BseBI CCWGG 1 cut(s) 308
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 260, 307
BseLI CCNNNNNNNGG 2 cut(s) 278, 308
BseMI GCAATG 2 cut(s) 240, 353
BseNI ACTGG 1 cut(s) 136
BseSI GKGCMC 1 cut(s) 319
BseXI GCAGC 2 cut(s) 313, 354
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 1 cut(s) 265
BshVI ATCGAT 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 319
BsiHKCI CYCGRG 1 cut(s) 274
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 2 cut(s) 278, 308
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 1 cut(s) 265
BsoBI CYCGRG 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 42, 319
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 4 cut(s) 342, 350, 365, 371
BspANI GGCC 1 cut(s) 265
BspDI ATCGAT 1 cut(s) 216
BspQI GCTCTTC 1 cut(s) 220
BsrDI GCAATG 2 cut(s) 240, 353
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 260, 307
BssMI GATC 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 220
BstACI GRCGYC 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 42
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 4 cut(s) 188, 323, 355, 364
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 319
BstV1I GCAGC 2 cut(s) 313, 354
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 1 cut(s) 265
BsuTUI ATCGAT 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 42
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 299
ClaI ATCGAT 1 cut(s) 216
CviJI RGCY 8 cut(s) 40, 107, 147, 191, 265, 293, 326, 380
CviKI_1 RGCY 8 cut(s) 40, 107, 147, 191, 265, 293, 326, 380
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
EciI GGCGGA 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 42
FaiI YATR 5 cut(s) 150, 304, 339, 389, 391
FalI AAGNNNNNCTT 2 cut(s) 175, 207
FaqI GGGAC 1 cut(s) 20
Fnu4HI GCNGC 4 cut(s) 327, 350, 368, 371
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 4 cut(s) 327, 350, 368, 371
GlaI GCGC 1 cut(s) 348
GluI GCNGC 4 cut(s) 327, 350, 368, 371
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 1 cut(s) 265
HapII CCGG 1 cut(s) 297
HhaI GCGC 1 cut(s) 349
Hin1I GRCGYC 1 cut(s) 256
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HinfI GANTC 3 cut(s) 97, 170, 176
HpaII CCGG 1 cut(s) 297
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 2 cut(s) 18, 317
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 2 cut(s) 101, 167
Hpy8I GTNNAC 2 cut(s) 18, 317
HpyAV CCTTC 1 cut(s) 276
HpyCH4IV ACGT 2 cut(s) 14, 256
HpyCH4V TGCA 3 cut(s) 197, 317, 329
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 323, 355, 364
HpySE526I ACGT 2 cut(s) 14, 256
Hsp92I GRCGYC 1 cut(s) 256
HspAI GCGC 1 cut(s) 347
Kzo9I GATC 1 cut(s) 213
LguI GCTCTTC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 344
LpnPI CCDG 7 cut(s) 117, 222, 293, 308, 310, 320, 390
Lsp1109I GCAGC 2 cut(s) 313, 354
MaeII ACGT 2 cut(s) 14, 256
MaeIII GTNAC 2 cut(s) 157, 236
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 3 cut(s) 234, 237, 294
MhlI GDGCHC 2 cut(s) 42, 319
MluCI AATT 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 6 cut(s) 29, 97, 180, 270, 272, 304
MspA1I CMGCKG 1 cut(s) 367
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 4 cut(s) 188, 323, 355, 364
NdeII GATC 1 cut(s) 213
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 220
PfeI GAWTC 3 cut(s) 97, 170, 176
PkrI GCNGC 4 cut(s) 328, 351, 369, 372
Psp1406I AACGTT 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspPI GGNCC 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 220
SatI GCNGC 4 cut(s) 327, 350, 368, 371
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 2 cut(s) 42, 319
SetI ASST 3 cut(s) 17, 259, 400
SinI GGWCC 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 1 cut(s) 232
SsiI CCGC 4 cut(s) 342, 350, 365, 371
StyD4I CCNGG 1 cut(s) 306
TaiI ACGT 2 cut(s) 17, 259
TaqI TCGA 1 cut(s) 216
TasI AATT 1 cut(s) 232
TauI GCSGC 2 cut(s) 352, 373
TfiI GAWTC 3 cut(s) 97, 170, 176
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 2 cut(s) 326, 367
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 78
TspRI CASTG 1 cut(s) 136
VneI GTGCAC 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 299
ZraI GACGTC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.