Rroxscaffold_3G00221720

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008508
Physical Location & Seq
Forward (+)
4519323 .. 4523408
4086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221720.1

Sequence Viewer

Length: 924 bp
ATGAGTATTGCATTACACCCAAGACTAGTTCGTTCGAAACAAGACATACCCACTTGTGATTTTGATGTTTTTCTTGCCATGGCTCATCCACATTACCGATCACAATTCGGAGACACAACTTTTACCAAAGTGTTTGTTGGAGGATTAGCATGGGAGACACCGACCGAGGAAATGCGAAGGTATTTCGAGCAGTTCGGAGAGATTCTTGAAGCTGTGATTATTGCTGATAAGAATACAGGAAAATCTAAAGGATATGGATTTGTGACTTTTCGTGATGCTGAATCGGCGAGGAGGGCTTGTGCTAATCCGAACCCCGTGATCGACGGAAGAAGAGCAAACTGTAATATTGCTTCGTTGGGAAGGCCTAGACCTTCACCCCCTAGAGGAAGGAATCAAGGTACAAGCCCATATCAAGGAAATGCACCACAGGCTGCACCATCCTACAGCGGAGTGCCGCCATTACCGCCACCGCTGCCACAAGCACCGGCTCCGATTATATATCCATCTTACAGTTACCCAACCTACAGTCCTGATTATGGATACCATCAACAAGCTGCTATGTACAACCAACAAGTAGTTCATCAACAGCCCCAGTACTACCACCAACAACACTATGGAGCATCATCACCTTCAACAATGGGAGCTCCATACTACTATCATCAAGGCTACTCTTTTCAATCTCCAAGGGGCTCATTTTCTCCGGTTCCCCAGGCGCAACGTATGCCCGCTGCACCTTCCTATGTCTATTATCCTACACAGCAGATGGATGCCTCCTTCTCCTCTTATCCTCCTCCAATCCTACAACAACCCCCCACATTAAGGCGTCCTCCTCTCACCTCTCCTTCCGATTCACAGAATCCACAACATGCCTCCACAGAATCAGAAGCTGGAGTTGCTACTTCAGAAAGTACTCCAGATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

307

Amino Acids

33.99

Weight (kDa)

8.32

Isoelectric Point (pI)

77.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 44 - 101 5e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 447, 455, 464, 470, 726
AcuI CTGAAG 1 cut(s) 885
AcyI GRCGYC 1 cut(s) 823
AfaI GTAC 4 cut(s) 400, 563, 596, 910
AfiI CCNNNNNNNGG 4 cut(s) 383, 413, 536, 819
AgsI TTSAA 3 cut(s) 209, 633, 677
AhlI ACTAGT 1 cut(s) 25
AjnI CCWGG 1 cut(s) 708
AjuI GAANNNNNNNTTGG 2 cut(s) 561, 593
AluBI AGCT 4 cut(s) 212, 554, 644, 887
AluI AGCT 4 cut(s) 212, 554, 644, 887
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 2 cut(s) 105, 149
AlwNI CAGNNNCTG 1 cut(s) 887
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 4 cut(s) 431, 472, 554, 728
AspLEI GCGC 1 cut(s) 715
AsuHPI GGTGA 3 cut(s) 366, 618, 826
AsuII TTCGAA 1 cut(s) 35
BanII GRGCYC 2 cut(s) 646, 692
BarI GAAGNNNNNNTAC 2 cut(s) 334, 366
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 4 cut(s) 418, 459, 541, 715
BccI CCATC 4 cut(s) 445, 511, 552, 757
BciT130I CCWGG 1 cut(s) 710
BciVI GTATCC 1 cut(s) 533
BcoDI GTCTC 2 cut(s) 105, 149
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 3 cut(s) 26, 366, 381
BfmI CTRYAG 2 cut(s) 442, 523
BfuI GTATCC 1 cut(s) 533
BisI GCNGC 5 cut(s) 432, 455, 473, 555, 729
BlsI GCNGC 5 cut(s) 433, 456, 474, 556, 730
BmcAI AGTACT 2 cut(s) 596, 910
Bme1390I CCNGG 1 cut(s) 710
BmiI GGNNCC 2 cut(s) 489, 705
BmrFI CCNGG 1 cut(s) 710
BmrI ACTGGG 1 cut(s) 586
BmsI GCATC 3 cut(s) 265, 629, 757
BmuI ACTGGG 1 cut(s) 586
BpmI CTGGAG 2 cut(s) 897, 909
Bpu14I TTCGAA 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 823
BsaJI CCNNGG 4 cut(s) 78, 165, 683, 708
BsaWI WCCGGW 1 cut(s) 700
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 4 cut(s) 383, 413, 536, 819
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 592
BseBI CCWGG 1 cut(s) 710
BseDI CCNNGG 4 cut(s) 78, 165, 683, 708
BseGI GGATG 3 cut(s) 85, 437, 772
BseLI CCNNNNNNNGG 4 cut(s) 383, 413, 536, 819
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 4 cut(s) 304, 769, 780, 819
BseXI GCAGC 4 cut(s) 418, 459, 541, 715
BsgI GTGCAG 2 cut(s) 417, 714
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 364
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 2 cut(s) 485, 701
BslI CCNNNNNNNGG 4 cut(s) 383, 413, 536, 819
BsmAI GTCTC 2 cut(s) 105, 149
BsnI GGCC 1 cut(s) 364
Bsp119I TTCGAA 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 646, 692
Bsp1407I TGTACA 1 cut(s) 561
Bsp143I GATC 2 cut(s) 98, 318
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 5 cut(s) 447, 455, 464, 470, 726
BspANI GGCC 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 489, 705
BspQI GCTCTTC 1 cut(s) 325
BspT104I TTCGAA 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 561
BsrI ACTGG 1 cut(s) 592
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 4 cut(s) 78, 165, 683, 708
BssMI GATC 2 cut(s) 98, 318
BssNI GRCGYC 1 cut(s) 823
BssT1I CCWWGG 2 cut(s) 78, 683
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 3 cut(s) 341, 512, 527
Bst6I CTCTTC 1 cut(s) 325
BstACI GRCGYC 1 cut(s) 823
BstAPI GCANNNNNTGC 1 cut(s) 721
BstAUI TGTACA 1 cut(s) 561
BstBI TTCGAA 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 726
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 3 cut(s) 85, 437, 772
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 2 cut(s) 101, 321
BstMAI GTCTC 2 cut(s) 105, 149
BstMBI GATC 2 cut(s) 98, 318
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 7 cut(s) 284, 293, 428, 463, 472, 721, 893
BstNI CCWGG 1 cut(s) 710
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 1 cut(s) 708
BstSFI CTRYAG 2 cut(s) 442, 523
BstV1I GCAGC 4 cut(s) 418, 459, 541, 715
BsuI GTATCC 1 cut(s) 533
BsuRI GGCC 1 cut(s) 364
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 3 cut(s) 85, 437, 772
Cac8I GCNNGC 1 cut(s) 726
CaiI CAGNNNCTG 1 cut(s) 887
CfoI GCGC 1 cut(s) 715
Cfr10I RCCGGY 1 cut(s) 484
CseI GACGC 1 cut(s) 812
Csp6I GTAC 4 cut(s) 399, 562, 595, 909
CviAII CATG 3 cut(s) 79, 150, 866
CviQI GTAC 4 cut(s) 399, 562, 595, 909
DpnI GATC 2 cut(s) 100, 320
DpnII GATC 2 cut(s) 98, 318
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
Ecl136II GAGCTC 1 cut(s) 644
Eco130I CCWWGG 2 cut(s) 78, 683
Eco147I AGGCCT 1 cut(s) 364
Eco24I GRGCYC 2 cut(s) 646, 692
Eco53kI GAGCTC 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 885
EcoICRI GAGCTC 1 cut(s) 644
EcoRII CCWGG 1 cut(s) 708
EcoT14I CCWWGG 2 cut(s) 78, 683
EcoT38I GRGCYC 2 cut(s) 646, 692
ErhI CCWWGG 2 cut(s) 78, 683
FaeI CATG 3 cut(s) 82, 153, 869
FatI CATG 3 cut(s) 78, 149, 865
FauI CCCGC 1 cut(s) 733
Fnu4HI GCNGC 5 cut(s) 432, 455, 473, 555, 729
FokI GGATG 3 cut(s) 72, 424, 779
FriOI GRGCYC 2 cut(s) 646, 692
Fsp4HI GCNGC 5 cut(s) 432, 455, 473, 555, 729
FspBI CTAG 3 cut(s) 26, 366, 381
GlaI GCGC 1 cut(s) 714
GluI GCNGC 5 cut(s) 432, 455, 473, 555, 729
GsuI CTGGAG 2 cut(s) 897, 909
HaeIII GGCC 1 cut(s) 364
HapII CCGG 2 cut(s) 485, 701
HgaI GACGC 1 cut(s) 812
HhaI GCGC 1 cut(s) 715
Hin1I GRCGYC 1 cut(s) 823
Hin1II CATG 3 cut(s) 82, 153, 869
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HinfI GANTC 6 cut(s) 202, 281, 391, 848, 856, 878
HpaII CCGG 2 cut(s) 485, 701
HphI GGTGA 3 cut(s) 366, 618, 826
Hpy188I TCNGA 7 cut(s) 110, 197, 309, 492, 847, 883, 904
Hpy188III TCNNGA 4 cut(s) 206, 272, 530, 914
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 8 cut(s) 171, 354, 381, 381, 639, 744, 784, 852
HpyCH4III ACNGT 3 cut(s) 341, 512, 527
HpyCH4IV ACGT 1 cut(s) 718
HpyCH4V TGCA 4 cut(s) 11, 422, 434, 731
HpyF10VI GCNNNNNNNGC 7 cut(s) 284, 293, 428, 463, 472, 721, 893
HpySE526I ACGT 1 cut(s) 718
Hsp92I GRCGYC 1 cut(s) 823
Hsp92II CATG 3 cut(s) 82, 153, 869
HspAI GCGC 1 cut(s) 713
Kzo9I GATC 2 cut(s) 98, 318
LguI GCTCTTC 1 cut(s) 325
LmnI GCTCC 4 cut(s) 493, 617, 641, 649
LpnPI CCDG 9 cut(s) 222, 413, 498, 543, 605, 695, 714, 722, 873
Lsp1109I GCAGC 4 cut(s) 418, 459, 541, 715
LweI GCATC 3 cut(s) 265, 629, 757
MaeI CTAG 3 cut(s) 26, 366, 381
MaeII ACGT 1 cut(s) 718
MaeIII GTNAC 2 cut(s) 262, 512
MalI GATC 2 cut(s) 100, 320
MboI GATC 2 cut(s) 98, 318
MboII GAAGA 2 cut(s) 339, 342
MhlI GDGCHC 2 cut(s) 646, 692
MluCI AATT 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 118
MseI TTAA 1 cut(s) 818
MspA1I CMGCKG 3 cut(s) 447, 472, 728
MspI CCGG 2 cut(s) 485, 701
MspR9I CCNGG 1 cut(s) 710
MvaI CCWGG 1 cut(s) 710
MwoI GCNNNNNNNGC 7 cut(s) 284, 293, 428, 463, 472, 721, 893
NcoI CCATGG 1 cut(s) 78
NdeII GATC 2 cut(s) 98, 318
NlaIII CATG 3 cut(s) 82, 153, 869
NlaIV GGNNCC 2 cut(s) 489, 705
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 1 cut(s) 869
NspV TTCGAA 1 cut(s) 35
PceI AGGCCT 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 325
PfeI GAWTC 6 cut(s) 202, 281, 391, 848, 856, 878
PkrI GCNGC 5 cut(s) 433, 456, 474, 556, 730
Psp124BI GAGCTC 1 cut(s) 646
Psp6I CCWGG 1 cut(s) 708
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 2 cut(s) 489, 705
PstNI CAGNNNCTG 1 cut(s) 887
RsaI GTAC 4 cut(s) 400, 563, 596, 910
RsaNI GTAC 4 cut(s) 399, 562, 595, 909
SacI GAGCTC 1 cut(s) 646
SapI GCTCTTC 1 cut(s) 325
SaqAI TTAA 1 cut(s) 818
SatI GCNGC 5 cut(s) 432, 455, 473, 555, 729
Sau3AI GATC 2 cut(s) 98, 318
ScaI AGTACT 2 cut(s) 596, 910
ScrFI CCNGG 1 cut(s) 710
SduI GDGCHC 2 cut(s) 646, 692
SfaNI GCATC 3 cut(s) 265, 629, 757
SfcI CTRYAG 2 cut(s) 442, 523
SfuI TTCGAA 1 cut(s) 35
SpeI ACTAGT 1 cut(s) 25
Sse9I AATT 1 cut(s) 104
SseBI AGGCCT 1 cut(s) 364
SsiI CCGC 5 cut(s) 447, 455, 464, 470, 726
SspI AATATT 1 cut(s) 346
SspMI CTAG 3 cut(s) 26, 366, 381
SstI GAGCTC 1 cut(s) 646
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 708
StyI CCWWGG 2 cut(s) 78, 683
TaaI ACNGT 3 cut(s) 341, 512, 527
TaiI ACGT 1 cut(s) 721
TaqI TCGA 3 cut(s) 35, 186, 321
TaqII GACCGA 1 cut(s) 179
TasI AATT 1 cut(s) 104
TatI WGTACW 3 cut(s) 561, 594, 908
TauI GCSGC 1 cut(s) 457
TfiI GAWTC 6 cut(s) 202, 281, 391, 848, 856, 878
Tru1I TTAA 1 cut(s) 818
Tru9I TTAA 1 cut(s) 818
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 4 cut(s) 431, 472, 554, 728
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 569
TspGWI ACGGA 1 cut(s) 339
XceI RCATGY 1 cut(s) 869
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XspI CTAG 3 cut(s) 26, 366, 381
ZrmI AGTACT 2 cut(s) 596, 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.