MD08G1184900.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0008508
Physical Location & Seq
Forward (+)
23060553 .. 23065651
5099 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1184900.v1.1.491

Sequence Viewer

Length: 846 bp
ATGGCGCATTCACATTATCGATCGCAGTTCGGGGACACAACGTTTACAAAAGTGTTTGTCGGAGGGTTAGCTTGGGAGACACCAACTGATGAAATGCGCAGATATTTTGAGCAGTTTGGGGAGATTCTTGAAGCGGTTATTATTGACGACAAAAATACTAGAAAATCTAAAGGCTACGGATTCGTGACATTTCGTGATCCTGAATCCACAAGGAGGGCTTGCACTAATCCAAACCCGGTAATCGGCGGAAGAAGAGCAAATTGTAACATTGCTTCACTGGGACGTCCACGACCTTCTCCCCCGAGAGGAAGAAACCAAGGCGCCACTCCATACCCGGGGAATGCACAACAGGCTACACAGTCCTACGGCAGAGTGCCCCCTTTACCGCCACCACTACCGCCATCGGCTCCTATAATATATCCATCTTACAGCTACCCAACCTACACTCCTGCAGATTATGGGTACCATCAACATGCTATGTACAACCCACAAGTGCATCAACAACCTCAGTACTACCCTCAAGTGTATGGATCATCACCATCTTCACCAATGGGCACTCCATATTACTATCATGGCTATTCTTTTCAATCTCCAAGTCCAAGGGGAACATTTTCTTCACCCCAGGCGCATCGTATGCTCGCCCCCTCCTATCTCTACTATCCTACGCACAACATGGAGCCCTCCTCCAGCTCCTATCCTAATCCTCCACTCCTACAACCACCCGCCACCTCAAGGCATAATCCTCCTAATGTTACCTTTCCTTCACCTGATTCGCGGAATCCACAACATGCCTCAACAGAAACAGAACCTGGAGTTGTTACTTCAGAATGCACTCCAGATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

282

Amino Acids

31.28

Weight (kDa)

8.85

Isoelectric Point (pI)

77.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 18 - 75 5.6e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 286
Acc16I TGCGCA 1 cut(s) 98
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 2 cut(s) 320, 462
AccII CGCG 1 cut(s) 775
AciI CCGC 6 cut(s) 134, 246, 386, 398, 723, 775
AclI AACGTT 1 cut(s) 41
AclWI GGATC 2 cut(s) 191, 538
AcuI CTGAAG 1 cut(s) 807
AcyI GRCGYC 2 cut(s) 283, 321
AfaI GTAC 3 cut(s) 464, 482, 512
AfiI CCNNNNNNNGG 5 cut(s) 213, 242, 305, 335, 732
AgsI TTSAA 2 cut(s) 131, 587
AjnI CCWGG 2 cut(s) 621, 808
AluBI AGCT 3 cut(s) 71, 432, 690
AluI AGCT 3 cut(s) 71, 432, 690
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 2 cut(s) 191, 538
AlwNI CAGNNNCTG 1 cut(s) 809
Ama87I CYCGRG 2 cut(s) 301, 334
Asp700I GAANNNNTTC 1 cut(s) 610
Asp718I GGTACC 1 cut(s) 462
AspLEI GCGC 4 cut(s) 7, 99, 323, 628
AsuC2I CCSGG 3 cut(s) 236, 335, 336
AsuHPI GGTGA 4 cut(s) 528, 537, 609, 756
AvaI CYCGRG 2 cut(s) 301, 334
BaeGI GKGCMC 2 cut(s) 378, 557
BanI GGYRCC 2 cut(s) 320, 462
BanII GRGCYC 1 cut(s) 681
BarI GAAGNNNNNNTAC 2 cut(s) 256, 288
BccI CCATC 4 cut(s) 409, 430, 474, 547
BceAI ACGGC 1 cut(s) 382
BciT130I CCWGG 2 cut(s) 623, 810
BcnI CCSGG 3 cut(s) 236, 335, 336
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 324
BmcAI AGTACT 1 cut(s) 512
Bme1390I CCNGG 5 cut(s) 236, 335, 336, 623, 810
BmeT110I CYCGRG 2 cut(s) 301, 334
BmiI GGNNCC 4 cut(s) 322, 408, 464, 678
BmrFI CCNGG 5 cut(s) 236, 335, 336, 623, 810
BmrI ACTGGG 1 cut(s) 287
BmsI GCATC 3 cut(s) 505, 637, 829
BmuI ACTGGG 1 cut(s) 287
BplI GAGNNNNNCTC 2 cut(s) 668, 700
BpmI CTGGAG 3 cut(s) 670, 819, 831
BpuEI CTTGAG 2 cut(s) 504, 715
BpuMI CCSGG 3 cut(s) 236, 335, 336
Bsa29I ATCGAT 1 cut(s) 19
BsaHI GRCGYC 2 cut(s) 283, 321
BsaJI CCNNGG 5 cut(s) 316, 334, 335, 599, 621
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 5 cut(s) 213, 242, 305, 335, 732
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 2 cut(s) 623, 810
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 5 cut(s) 316, 334, 335, 599, 621
BseLI CCNNNNNNNGG 5 cut(s) 213, 242, 305, 335, 732
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 521
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 673
BseSI GKGCMC 2 cut(s) 378, 557
Bsh1236I CGCG 1 cut(s) 775
Bsh1285I CGRYCG 1 cut(s) 23
BshNI GGYRCC 2 cut(s) 320, 462
BshVI ATCGAT 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 23
BsiHKCI CYCGRG 2 cut(s) 301, 334
BsiSI CCGG 2 cut(s) 236, 335
BslFI GGGAC 2 cut(s) 47, 294
BslI CCNNNNNNNGG 5 cut(s) 213, 242, 305, 335, 732
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 47, 294
BsmI GAATGC 3 cut(s) 7, 346, 833
BsoBI CYCGRG 2 cut(s) 301, 334
Bsp1286I GDGCHC 3 cut(s) 378, 557, 681
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 3 cut(s) 20, 196, 530
BspACI CCGC 6 cut(s) 134, 246, 386, 398, 723, 775
BspCNI CTCAG 1 cut(s) 520
BspDI ATCGAT 1 cut(s) 19
BspFNI CGCG 1 cut(s) 775
BspLI GGNNCC 4 cut(s) 322, 408, 464, 678
BspMAI CTGCAG 1 cut(s) 454
BspPI GGATC 2 cut(s) 191, 538
BspQI GCTCTTC 1 cut(s) 247
BspT107I GGYRCC 2 cut(s) 320, 462
BsrDI GCAATG 1 cut(s) 267
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 5 cut(s) 316, 334, 335, 599, 621
BssMI GATC 3 cut(s) 20, 196, 530
BssNI GRCGYC 2 cut(s) 283, 321
BssT1I CCWWGG 2 cut(s) 316, 599
Bst2UI CCWGG 2 cut(s) 623, 810
Bst4CI ACNGT 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 247
BstACI GRCGYC 2 cut(s) 283, 321
BstAPI GCANNNNNTGC 1 cut(s) 634
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 2 cut(s) 220, 639
BstDEI CTNAG 1 cut(s) 507
BstFNI CGCG 1 cut(s) 775
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 4 cut(s) 7, 99, 323, 628
BstKTI GATC 3 cut(s) 23, 199, 533
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 3 cut(s) 20, 196, 530
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 2 cut(s) 350, 634
BstNI CCWGG 2 cut(s) 623, 810
BstNSI RCATGY 2 cut(s) 476, 791
BstSCI CCNGG 5 cut(s) 234, 333, 334, 621, 808
BstSFI CTRYAG 1 cut(s) 450
BstSLI GKGCMC 2 cut(s) 378, 557
BstUI CGCG 1 cut(s) 775
Bsu15I ATCGAT 1 cut(s) 19
BsuTUI ATCGAT 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 2 cut(s) 220, 639
CaiI CAGNNNCTG 1 cut(s) 809
CfoI GCGC 4 cut(s) 7, 99, 323, 628
Cfr9I CCCGGG 1 cut(s) 334
ClaI ATCGAT 1 cut(s) 19
Csp6I GTAC 3 cut(s) 463, 481, 511
CviAII CATG 4 cut(s) 473, 572, 673, 788
CviJI RGCY 9 cut(s) 71, 174, 218, 353, 407, 432, 576, 679, 690
CviKI_1 RGCY 9 cut(s) 71, 174, 218, 353, 407, 432, 576, 679, 690
CviQI GTAC 3 cut(s) 463, 481, 511
DdeI CTNAG 1 cut(s) 507
DinI GGCGCC 1 cut(s) 322
DpnI GATC 3 cut(s) 22, 198, 532
DpnII GATC 3 cut(s) 20, 196, 530
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
EciI GGCGGA 1 cut(s) 261
Eco130I CCWWGG 2 cut(s) 316, 599
Eco24I GRGCYC 1 cut(s) 681
Eco57I CTGAAG 1 cut(s) 807
Eco88I CYCGRG 2 cut(s) 301, 334
EcoRII CCWGG 2 cut(s) 621, 808
EcoT14I CCWWGG 2 cut(s) 316, 599
EcoT38I GRGCYC 1 cut(s) 681
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
ErhI CCWWGG 2 cut(s) 316, 599
FaeI CATG 4 cut(s) 476, 575, 676, 791
FalI AAGNNNNNCTT 2 cut(s) 202, 234
FaqI GGGAC 2 cut(s) 47, 294
FatI CATG 4 cut(s) 472, 571, 672, 787
FauI CCCGC 1 cut(s) 730
FriOI GRGCYC 1 cut(s) 681
FspBI CTAG 1 cut(s) 159
FspI TGCGCA 1 cut(s) 98
GlaI GCGC 4 cut(s) 6, 98, 322, 627
GsuI CTGGAG 3 cut(s) 670, 819, 831
HaeII RGCGCY 1 cut(s) 324
HapII CCGG 2 cut(s) 236, 335
HhaI GCGC 4 cut(s) 7, 99, 323, 628
Hin1I GRCGYC 2 cut(s) 283, 321
Hin1II CATG 4 cut(s) 476, 575, 676, 791
Hin6I GCGC 4 cut(s) 5, 97, 321, 626
HinP1I GCGC 4 cut(s) 5, 97, 321, 626
HinfI GANTC 5 cut(s) 124, 180, 203, 770, 778
HpaII CCGG 2 cut(s) 236, 335
HphI GGTGA 4 cut(s) 528, 537, 609, 756
Hpy166II GTNNAC 2 cut(s) 45, 287
Hpy188I TCNGA 2 cut(s) 62, 826
Hpy188III TCNNGA 5 cut(s) 128, 184, 194, 200, 836
Hpy8I GTNNAC 2 cut(s) 45, 287
HpyAV CCTTC 2 cut(s) 303, 771
HpyCH4III ACNGT 1 cut(s) 360
HpyCH4IV ACGT 2 cut(s) 41, 283
HpyCH4V TGCA 5 cut(s) 222, 344, 452, 496, 831
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 634
HpyF3I CTNAG 1 cut(s) 507
HpySE526I ACGT 2 cut(s) 41, 283
Hsp92I GRCGYC 2 cut(s) 283, 321
Hsp92II CATG 4 cut(s) 476, 575, 676, 791
HspAI GCGC 4 cut(s) 5, 97, 321, 626
KasI GGCGCC 1 cut(s) 320
KpnI GGTACC 1 cut(s) 466
Kzo9I GATC 3 cut(s) 20, 196, 530
LguI GCTCTTC 1 cut(s) 247
LmnI GCTCC 3 cut(s) 412, 676, 695
LweI GCATC 3 cut(s) 505, 637, 829
MaeI CTAG 1 cut(s) 159
MaeII ACGT 2 cut(s) 41, 283
MaeIII GTNAC 4 cut(s) 184, 263, 751, 817
MalI GATC 3 cut(s) 22, 198, 532
MboI GATC 3 cut(s) 20, 196, 530
MboII GAAGA 5 cut(s) 261, 264, 321, 534, 606
MhlI GDGCHC 3 cut(s) 378, 557, 681
MluCI AATT 1 cut(s) 259
Mly113I GGCGCC 1 cut(s) 321
MmeI TCCRAC 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 610
MslI CAYNNNNRTG 1 cut(s) 471
MspI CCGG 2 cut(s) 236, 335
MspR9I CCNGG 5 cut(s) 236, 335, 336, 623, 810
Mva1269I GAATGC 3 cut(s) 7, 346, 833
MvaI CCWGG 2 cut(s) 623, 810
MvnI CGCG 1 cut(s) 775
MwoI GCNNNNNNNGC 2 cut(s) 350, 634
NarI GGCGCC 1 cut(s) 321
NciI CCSGG 3 cut(s) 236, 335, 336
NdeII GATC 3 cut(s) 20, 196, 530
NlaIII CATG 4 cut(s) 476, 575, 676, 791
NlaIV GGNNCC 4 cut(s) 322, 408, 464, 678
NmuCI GTSAC 1 cut(s) 184
NsbI TGCGCA 1 cut(s) 98
NspI RCATGY 2 cut(s) 476, 791
PciSI GCTCTTC 1 cut(s) 247
PctI GAATGC 3 cut(s) 7, 346, 833
PdmI GAANNNNTTC 1 cut(s) 610
PfeI GAWTC 5 cut(s) 124, 180, 203, 770, 778
Ple19I CGATCG 1 cut(s) 23
PluTI GGCGCC 1 cut(s) 324
Psp1406I AACGTT 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 621, 808
PspGI CCWGG 2 cut(s) 621, 808
PspN4I GGNNCC 4 cut(s) 322, 408, 464, 678
PstI CTGCAG 1 cut(s) 454
PstNI CAGNNNCTG 1 cut(s) 809
PvuI CGATCG 1 cut(s) 23
RsaI GTAC 3 cut(s) 464, 482, 512
RsaNI GTAC 3 cut(s) 463, 481, 511
RseI CAYNNNNRTG 1 cut(s) 471
SapI GCTCTTC 1 cut(s) 247
Sau3AI GATC 3 cut(s) 20, 196, 530
ScaI AGTACT 1 cut(s) 512
ScrFI CCNGG 5 cut(s) 236, 335, 336, 623, 810
SduI GDGCHC 3 cut(s) 378, 557, 681
SfaNI GCATC 3 cut(s) 505, 637, 829
SfcI CTRYAG 1 cut(s) 450
SfoI GGCGCC 1 cut(s) 322
SmaI CCCGGG 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 2 cut(s) 519, 730
SmoI CTYRAG 2 cut(s) 519, 730
Sse9I AATT 1 cut(s) 259
SsiI CCGC 6 cut(s) 134, 246, 386, 398, 723, 775
SspDI GGCGCC 1 cut(s) 320
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 5 cut(s) 234, 333, 334, 621, 808
StyI CCWWGG 2 cut(s) 316, 599
TaaI ACNGT 1 cut(s) 360
TaiI ACGT 2 cut(s) 44, 286
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 259
TatI WGTACW 2 cut(s) 480, 510
TfiI GAWTC 5 cut(s) 124, 180, 203, 770, 778
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 192
TspMI CCCGGG 1 cut(s) 334
TspRI CASTG 1 cut(s) 282
XceI RCATGY 2 cut(s) 476, 791
XmaI CCCGGG 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 610
XspI CTAG 1 cut(s) 159
ZraI GACGTC 1 cut(s) 284
ZrmI AGTACT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.