Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006525

Physical Location & Seq

Genomic Coordinates Reverse (-)

8283644 .. 8286969

Gene Structure 3326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGTCTTCTTCTTCTTCTTGCTTGTTCTTCACTTTCATTCTCTTACTCAGTCTCTTCTCCTCCTATGCTTCTCCATCGAATTCGACATCCGAAACTGTGCCTCTCCGGCCTCAAAGAGAGATTCAGAAGATGAAACTCATCAGAAAACAACTCCAAAAGATTAATAAACCAGCCATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTGTTCCATCTCATCACCAGCCTGCTTTTGATCATCCTTTGTTACAGGGACAACGACCAATGGATCCACCGGAGATGCCTATAGGGTATAGCCAAGAAAATGAATCCCACGAAAATTTCCAGCTTTGGAGTTTATACGGTGAGTCTTGCCCGGAAGGTACGATTCCGATCAGAAGAACAACGGAGCAAGACATGTTAAGAGCAAATTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGCGTGAGAAGGGATTCGAGCAGTAATGGCCACGAGCATGCGGTTGGATACGTATCGGGAAGTCAATACTACGGAGCAAAAGCAAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACGAGTTTAGTCTATCTCAGATTTGGATCATCGCCGGTTCTTTCGCCGGCGATCTTAATACCATCGAAGCTGGTTGGCAGATTAGCCCGGAGCTATACGGAGACACTAACCCAAGATTCTTCACCTATTGGACGTCGGATGCTTACCAAGCAACAGGATGCTATAACCTACTATGTTCTGGTTTTGTTCAAACAAACAATCGAATCGCAATTGGAGCGGCGATTTCGCCCGTTTCGTCGTATAAAGGTGGACAATTCGATATAAGCTTATTGATATGGAAGGACCCAAAGCATGGACATTGGTGGCTCCAATTCGGGTCGGGTACACTAGTCGGATATTGGCCCGTATCTCTGTTCACACACCTGAGGGAGCATGGAAACATGGTCCAGTTTGGTGGCGAGATCGTGAACACACGACCTGGTGGTTCACATACTTCGACTCAAATGGGCAGTGGCCATTTTGCCGGTGAAGGTTTTGGAAAAGCGTCTTACTTTAGGAATCTTCAAATGGTAGATTGGGACAATACTCTTATTCCGATATCTAATCTTAAAGTTCTTGCAGATCATCCTAATTGTTATGATATAAGAGGAGGGGTAAACCGTGTTTGGGGTAACTTTTTTTATTACGGAGGACCGGGTAAAAACTCGAAATGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

409

Amino Acids

45.86

Weight (kDa)

8.72

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	61 - 167	3.2e-38	Neprosin activation peptide
Neprosin	PF03080	191 - 402	6.4e-87	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10750 AT1G10750 AT1G23340 AT1G23340 AT1G23340 AT1G70550 AT1G70550
fragaria_vesca	FvH4_4g25820 FvH4_4g25820 FvH4_4g25820 FvH4_4g25820
malus_domestica	MD13G1097000.v1.1 MD16G1097900.v1.1
prunus_persica	Prupe.1G248600_v2.0.a1
pyrus_communis	pycom13g08470 pycom16g08340
rosa_chinensis	RchiOBHm_Chr4g0433271
rosa_laevigata	RLG00000006768
rosa_multiflora	Rmu_sc0022950.1_g000002
rosa_roxburghii	Rroxscaffold_5G00374830
rosa_rugosa	Rorug04G0267600
rosa_samantha	Rh4AG322100 Rh4BG329500 Rh4CG344800 Rh4DG326200
rosa_wichuraiana	Rw4G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	707
AccB7I	CCANNNNNTGG	1 cut(s)	863
AccBSI	CCGCTC	1 cut(s)	788
AccII	CGCG	1 cut(s)	453
AciI	CCGC	2 cut(s)	491, 788
AclWI	GGATC	3 cut(s)	272, 285, 605
AcoI	YGGCCR	2 cut(s)	478, 1024
AcsI	RAATTY	3 cut(s)	79, 328, 418
AcvI	CACGTG	1 cut(s)	557
AcyI	GRCGYC	2 cut(s)	551, 704
AfaI	GTAC	2 cut(s)	373, 895
AfiI	CCNNNNNNNGG	2 cut(s)	863, 1177
AflIII	ACRYGT	3 cut(s)	405, 543, 556
AgsI	TTSAA	2 cut(s)	761, 1076
AhlI	ACTAGT	1 cut(s)	898
AjnI	CCWGG	1 cut(s)	988
AluBI	AGCT	5 cut(s)	192, 337, 641, 664, 837
AluI	AGCT	5 cut(s)	192, 337, 641, 664, 837
Alw26I	GTCTC	2 cut(s)	56, 666
AlwI	GGATC	3 cut(s)	272, 285, 605
AoxI	GGCC	4 cut(s)	107, 478, 911, 1024
ApoI	RAATTY	3 cut(s)	79, 328, 418
AseI	ATTAAT	1 cut(s)	162
Asp700I	GAANNNNTTC	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	453
AspS9I	GGNCC	4 cut(s)	853, 912, 955, 1202
AsuC2I	CCSGG	3 cut(s)	365, 659, 1206
AsuHPI	GGTGA	4 cut(s)	221, 365, 685, 1049
AvaII	GGWCC	3 cut(s)	853, 955, 1202
AxyI	CCTNAGG	1 cut(s)	935
BaeI	ACNNNNGTAYC	2 cut(s)	885, 918
BalI	TGGCCA	2 cut(s)	480, 1026
BamHI	GGATCC	1 cut(s)	277
BauI	CACGAG	1 cut(s)	482
BbrPI	CACGTG	1 cut(s)	557
BccI	CCATC	5 cut(s)	82, 182, 191, 229, 641
BciT130I	CCWGG	1 cut(s)	990
BciVI	GTATCC	1 cut(s)	491
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	3 cut(s)	365, 659, 1206
BcoDI	GTCTC	2 cut(s)	56, 666
BcuI	ACTAGT	1 cut(s)	898
BfaI	CTAG	1 cut(s)	899
BfmI	CTRYAG	1 cut(s)	294
BfuI	GTATCC	1 cut(s)	491
BglI	GCCNNNNNGGC	1 cut(s)	106
BisI	GCNGC	1 cut(s)	789
BlsI	GCNGC	1 cut(s)	790
Bme1390I	CCNGG	4 cut(s)	365, 659, 990, 1206
Bme18I	GGWCC	3 cut(s)	853, 955, 1202
BmgT120I	GGNCC	4 cut(s)	853, 912, 955, 1202
BmiI	GGNNCC	3 cut(s)	279, 855, 878
BmrFI	CCNGG	4 cut(s)	365, 659, 990, 1206
BmsI	GCATC	3 cut(s)	279, 700, 719
BpuMI	CCSGG	3 cut(s)	365, 659, 1206
BsaAI	YACGTR	2 cut(s)	502, 557
BsaBI	GATNNNNATC	3 cut(s)	380, 502, 596
BsaHI	GRCGYC	2 cut(s)	551, 704
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	2 cut(s)	863, 1177
Bse118I	RCCGGY	3 cut(s)	605, 617, 1034
Bse1I	ACTGG	1 cut(s)	958
Bse21I	CCTNAGG	1 cut(s)	935
Bse8I	GATNNNNATC	3 cut(s)	380, 502, 596
BseBI	CCWGG	1 cut(s)	990
BseGI	GGATG	5 cut(s)	86, 247, 715, 734, 1135
BseJI	GATNNNNATC	3 cut(s)	380, 502, 596
BseLI	CCNNNNNNNGG	2 cut(s)	863, 1177
BseMII	CTCAG	4 cut(s)	61, 207, 602, 926
BseNI	ACTGG	1 cut(s)	958
BseRI	GAGGAG	2 cut(s)	49, 1173
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	4 cut(s)	109, 480, 913, 1026
BsiSI	CCGG	8 cut(s)	106, 284, 365, 606, 618, 659, 1035, 1205
BslFI	GGGAC	2 cut(s)	276, 1103
BslI	CCNNNNNNNGG	2 cut(s)	863, 1177
BsmAI	GTCTC	2 cut(s)	56, 666
BsmFI	GGGAC	2 cut(s)	276, 1103
BsnI	GGCC	4 cut(s)	109, 480, 913, 1026
Bsp143I	GATC	7 cut(s)	244, 277, 381, 597, 622, 972, 1132
BspACI	CCGC	2 cut(s)	491, 788
BspANI	GGCC	4 cut(s)	109, 480, 913, 1026
BspCNI	CTCAG	4 cut(s)	60, 206, 601, 927
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	3 cut(s)	279, 855, 878
BspPI	GGATC	3 cut(s)	272, 285, 605
BsrBI	CCGCTC	1 cut(s)	788
BsrFI	RCCGGY	3 cut(s)	605, 617, 1034
BsrI	ACTGG	1 cut(s)	958
BssAI	RCCGGY	3 cut(s)	605, 617, 1034
BssMI	GATC	7 cut(s)	244, 277, 381, 597, 622, 972, 1132
BssNI	GRCGYC	2 cut(s)	551, 704
BssSI	CACGAG	1 cut(s)	482
Bst2BI	CACGAG	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	3 cut(s)	97, 353, 1172
Bst6I	CTCTTC	1 cut(s)	59
BstACI	GRCGYC	2 cut(s)	551, 704
BstBAI	YACGTR	2 cut(s)	502, 557
BstC8I	GCNNGC	3 cut(s)	237, 489, 619
BstDEI	CTNAG	4 cut(s)	47, 193, 588, 935
BstF5I	GGATG	5 cut(s)	86, 247, 715, 734, 1135
BstFNI	CGCG	1 cut(s)	453
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	7 cut(s)	247, 280, 384, 600, 625, 975, 1135
BstMAI	GTCTC	2 cut(s)	56, 666
BstMBI	GATC	7 cut(s)	244, 277, 381, 597, 622, 972, 1132
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 477, 719, 785
BstNI	CCWGG	1 cut(s)	990
BstNSI	RCATGY	2 cut(s)	409, 491
BstSCI	CCNGG	4 cut(s)	363, 657, 988, 1204
BstSFI	CTRYAG	1 cut(s)	294
BstSNI	TACGTA	1 cut(s)	502
BstUI	CGCG	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	965
BstYI	RGATCY	1 cut(s)	277
Bsu36I	CCTNAGG	1 cut(s)	935
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	4 cut(s)	109, 480, 913, 1026
BtgZI	GCGATG	1 cut(s)	586
BtsCI	GGATG	5 cut(s)	86, 247, 715, 734, 1135
BtsI	GCAGTG	1 cut(s)	1027
BtsIMutI	CAGTG	1 cut(s)	1027
Cac8I	GCNNGC	3 cut(s)	237, 489, 619
CfoI	GCGC	1 cut(s)	453
Cfr10I	RCCGGY	3 cut(s)	605, 617, 1034
Cfr13I	GGNCC	4 cut(s)	853, 912, 955, 1202
CseI	GACGC	2 cut(s)	559, 1044
CsiI	ACCWGGT	1 cut(s)	988
Csp6I	GTAC	2 cut(s)	372, 894
CviAII	CATG	5 cut(s)	406, 488, 863, 944, 952
CviQI	GTAC	2 cut(s)	372, 894
DdeI	CTNAG	4 cut(s)	47, 193, 588, 935
DpnI	GATC	7 cut(s)	246, 279, 383, 599, 624, 974, 1134
DpnII	GATC	7 cut(s)	244, 277, 381, 597, 622, 972, 1132
EaeI	YGGCCR	2 cut(s)	478, 1024
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco105I	TACGTA	1 cut(s)	502
Eco32I	GATATC	1 cut(s)	1110
Eco47I	GGWCC	3 cut(s)	853, 955, 1202
Eco72I	CACGTG	1 cut(s)	557
Eco81I	CCTNAGG	1 cut(s)	935
EcoO109I	RGGNCCY	1 cut(s)	853
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	988
EcoRV	GATATC	1 cut(s)	1110
FaeI	CATG	5 cut(s)	409, 491, 866, 947, 955
FaqI	GGGAC	2 cut(s)	276, 1103
FatI	CATG	5 cut(s)	405, 487, 862, 943, 951
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	789
FokI	GGATG	5 cut(s)	73, 234, 722, 741, 1122
Fsp4HI	GCNGC	1 cut(s)	789
FspBI	CTAG	1 cut(s)	899
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	1 cut(s)	789
HaeIII	GGCC	4 cut(s)	109, 480, 913, 1026
HapII	CCGG	8 cut(s)	106, 284, 365, 606, 618, 659, 1035, 1205
HgaI	GACGC	2 cut(s)	559, 1044
HhaI	GCGC	1 cut(s)	453
Hin1I	GRCGYC	2 cut(s)	551, 704
Hin1II	CATG	5 cut(s)	409, 491, 866, 947, 955
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	835
HinfI	GANTC	9 cut(s)	121, 317, 356, 376, 464, 687, 774, 1009, 1069
HpaII	CCGG	8 cut(s)	106, 284, 365, 606, 618, 659, 1035, 1205
HphI	GGTGA	4 cut(s)	221, 365, 685, 1049
Hpy166II	GTNNAC	7 cut(s)	549, 821, 896, 927, 979, 998, 1168
Hpy188III	TCNNGA	3 cut(s)	178, 507, 976
Hpy8I	GTNNAC	7 cut(s)	549, 821, 896, 927, 979, 998, 1168
Hpy99I	CGWCG	2 cut(s)	709, 811
HpyAV	CCTTC	4 cut(s)	362, 453, 844, 1034
HpyCH4III	ACNGT	3 cut(s)	97, 353, 1172
HpyCH4IV	ACGT	4 cut(s)	501, 543, 556, 704
HpyCH4V	TGCA	1 cut(s)	1130
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 477, 719, 785
HpyF3I	CTNAG	4 cut(s)	47, 193, 588, 935
HpySE526I	ACGT	4 cut(s)	501, 543, 556, 704
Hsp92I	GRCGYC	2 cut(s)	551, 704
Hsp92II	CATG	5 cut(s)	409, 491, 866, 947, 955
HspAI	GCGC	1 cut(s)	451
KroI	GCCGGC	1 cut(s)	617
KroNI	GCCGGC	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	7 cut(s)	244, 277, 381, 597, 622, 972, 1132
LmnI	GCTCC	6 cut(s)	397, 524, 661, 785, 882, 940
LweI	GCATC	3 cut(s)	279, 700, 719
MabI	ACCWGGT	1 cut(s)	988
MaeI	CTAG	1 cut(s)	899
MaeII	ACGT	4 cut(s)	501, 543, 556, 704
MaeIII	GTNAC	2 cut(s)	255, 1181
MalI	GATC	7 cut(s)	246, 279, 383, 599, 624, 974, 1134
MbiI	CCGCTC	1 cut(s)	788
MboI	GATC	7 cut(s)	244, 277, 381, 597, 622, 972, 1132
MboII	GAAGA	8 cut(s)	3, 6, 19, 46, 139, 399, 682, 1064
MfeI	CAATTG	1 cut(s)	780
MflI	RGATCY	1 cut(s)	277
MlsI	TGGCCA	2 cut(s)	480, 1026
MluCI	AATT	7 cut(s)	79, 328, 418, 780, 824, 881, 1141
MluNI	TGGCCA	2 cut(s)	480, 1026
MlyI	GAGTC	2 cut(s)	365, 1003
MmeI	TCCRAC	4 cut(s)	419, 475, 687, 883
MnlI	CCTC	7 cut(s)	70, 111, 120, 930, 1151, 1154, 1193
Mox20I	TGGCCA	2 cut(s)	480, 1026
MreI	CGCCGGCG	1 cut(s)	617
MroNI	GCCGGC	1 cut(s)	617
MroXI	GAANNNNTTC	1 cut(s)	463
MscI	TGGCCA	2 cut(s)	480, 1026
MseI	TTAA	4 cut(s)	162, 410, 627, 1119
MslI	CAYNNNNRTG	1 cut(s)	486
Msp20I	TGGCCA	2 cut(s)	480, 1026
MspI	CCGG	8 cut(s)	106, 284, 365, 606, 618, 659, 1035, 1205
MspR9I	CCNGG	4 cut(s)	365, 659, 990, 1206
MunI	CAATTG	1 cut(s)	780
MvaI	CCWGG	1 cut(s)	990
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	4 cut(s)	106, 477, 719, 785
NaeI	GCCGGC	1 cut(s)	619
NciI	CCSGG	3 cut(s)	365, 659, 1206
NdeII	GATC	7 cut(s)	244, 277, 381, 597, 622, 972, 1132
NgoMIV	GCCGGC	1 cut(s)	617
NlaIII	CATG	5 cut(s)	409, 491, 866, 947, 955
NlaIV	GGNNCC	3 cut(s)	279, 855, 878
NspI	RCATGY	2 cut(s)	409, 491
PaeI	GCATGC	1 cut(s)	491
PciI	ACATGT	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	803
PdiI	GCCGGC	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	7 cut(s)	121, 317, 376, 464, 687, 774, 1069
PflMI	CCANNNNNTGG	1 cut(s)	863
PkrI	GCNGC	1 cut(s)	790
PleI	GAGTC	2 cut(s)	364, 1003
PmaCI	CACGTG	1 cut(s)	557
PmlI	CACGTG	1 cut(s)	557
PpsI	GAGTC	2 cut(s)	364, 1003
Ppu21I	YACGTR	2 cut(s)	502, 557
PpuMI	RGGWCCY	1 cut(s)	853
PscI	ACATGT	1 cut(s)	405
PshBI	ATTAAT	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	853
Psp6I	CCWGG	1 cut(s)	988
PspCI	CACGTG	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	988
PspN4I	GGNNCC	3 cut(s)	279, 855, 878
PspPI	GGNCC	4 cut(s)	853, 912, 955, 1202
PspPPI	RGGWCCY	1 cut(s)	853
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	2 cut(s)	373, 895
RsaNI	GTAC	2 cut(s)	372, 894
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	4 cut(s)	162, 410, 627, 1119
SatI	GCNGC	1 cut(s)	789
Sau3AI	GATC	7 cut(s)	244, 277, 381, 597, 622, 972, 1132
Sau96I	GGNCC	4 cut(s)	853, 912, 955, 1202
SchI	GAGTC	2 cut(s)	365, 1003
ScrFI	CCNGG	4 cut(s)	365, 659, 990, 1206
SexAI	ACCWGGT	1 cut(s)	988
SfaNI	GCATC	3 cut(s)	279, 700, 719
SfcI	CTRYAG	1 cut(s)	294
SgrAI	CRCCGGYG	1 cut(s)	617
SinI	GGWCC	3 cut(s)	853, 955, 1202
SmiMI	CAYNNNNRTG	1 cut(s)	486
SnaBI	TACGTA	1 cut(s)	502
SpeI	ACTAGT	1 cut(s)	898
SphI	GCATGC	1 cut(s)	491
Sse9I	AATT	7 cut(s)	79, 328, 418, 780, 824, 881, 1141
SsiI	CCGC	2 cut(s)	491, 788
SspMI	CTAG	1 cut(s)	899
StyD4I	CCNGG	4 cut(s)	363, 657, 988, 1204
TaaI	ACNGT	3 cut(s)	97, 353, 1172
TaiI	ACGT	4 cut(s)	504, 546, 559, 707
TaqI	TCGA	8 cut(s)	77, 83, 467, 636, 772, 828, 1007, 1217
TasI	AATT	7 cut(s)	79, 328, 418, 780, 824, 881, 1141
TauI	GCSGC	1 cut(s)	791
TfiI	GAWTC	7 cut(s)	121, 317, 376, 464, 687, 774, 1069
Tru1I	TTAA	4 cut(s)	162, 410, 627, 1119
Tru9I	TTAA	4 cut(s)	162, 410, 627, 1119
TscAI	CASTG	1 cut(s)	1027
TspDTI	ATGAA	4 cut(s)	25, 146, 176, 330
TspGWI	ACGGA	5 cut(s)	410, 416, 537, 684, 1212
TspRI	CASTG	1 cut(s)	1027
Van91I	CCANNNNNTGG	1 cut(s)	863
VpaK11BI	GGWCC	3 cut(s)	853, 955, 1202
VspI	ATTAAT	1 cut(s)	162
XapI	RAATTY	3 cut(s)	79, 328, 418
XceI	RCATGY	2 cut(s)	409, 491
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	1 cut(s)	899
ZraI	GACGTC	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.