Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022950.1

Orthogroup ID

OG0006525

Physical Location & Seq

Genomic Coordinates Forward (+)

9423 .. 11203

Gene Structure 1781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022950.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atggcttctagctggtctaatgtttcctccccaatcattcctcttcttgtttgcttccttcttgtttcttcttcaatatgtccggtagtccactccgctgaaatggccaatcagactttcaatccggagcaacagttaaagaagctgaagaacatgaaggctcgtctcagaaaaatcaacaagcctgccctcaagacatttcagagtccagatggtgatcttatagattgtgttcattctcatcagcaacctgcttttgatcatcctcgattaaaaggacagaagccattggatccacctgagagaccaaaaggtcttaatcccactagtatgatccatgaaaattttcaactgtggagcttgtcaggtaatatatgcccagatggtacaattccgattcgaagaacaagagagcaagacgtgctcagagctagctcggttcgaagatacggaagaaaaacacccaggcatgttcgaagagattcatccagcaatggccatgagcatgcagttgggtatgtgagtggagatcaatactatggagcaaaagcaagtatcaatgtctgggcaccaaaggttgcgaatcaatatgaattcagcttatctcaaatgtgggtcatttctggttcatttggcgacgacctcaacaccattgaagctggttggcaggtcagcccagagctatatggggacaactatcctagattctttacttattggacaacagatgcatatcaagcaactgggtgctacaatctgctgtgttcgggttttgttcagacgaatagtcgaatagccattggagctgcaatttctccaacctctggttacaatggtggacagtttgatattagtttattgatttggaaggtaaataactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

293

Amino Acids

32.75

Weight (kDa)

9.08

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10750 AT1G10750 AT1G23340 AT1G23340 AT1G23340 AT1G70550 AT1G70550
fragaria_vesca	FvH4_4g25820 FvH4_4g25820 FvH4_4g25820 FvH4_4g25820
malus_domestica	MD13G1097000.v1.1 MD16G1097900.v1.1
prunus_persica	Prupe.1G248600_v2.0.a1
pyrus_communis	pycom13g08470 pycom16g08340
rosa_chinensis	RchiOBHm_Chr4g0433271
rosa_laevigata	RLG00000006768
rosa_multiflora	Rmu_sc0022950.1_g000002
rosa_roxburghii	Rroxscaffold_5G00374830
rosa_rugosa	Rorug04G0267600
rosa_samantha	Rh4AG322100 Rh4BG329500 Rh4CG344800 Rh4DG326200
rosa_wichuraiana	Rw4G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	312
Acc36I	ACCTGC	2 cut(s)	259, 658
AccB1I	GGYRCC	1 cut(s)	568
AccB7I	CCANNNNNTGG	1 cut(s)	824
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	3 cut(s)	287, 300, 328
AcoI	YGGCCR	2 cut(s)	105, 496
AcsI	RAATTY	2 cut(s)	343, 593
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	824
AgsI	TTSAA	4 cut(s)	75, 121, 350, 656
AhdI	GACNNNNNGTC	1 cut(s)	786
AhlI	ACTAGT	1 cut(s)	326
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	464
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	9 cut(s)	12, 145, 360, 431, 435, 600, 659, 682, 806
AluI	AGCT	9 cut(s)	12, 145, 360, 431, 435, 600, 659, 682, 806
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	2 cut(s)	170, 298
AlwI	GGATC	3 cut(s)	287, 300, 328
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	2 cut(s)	105, 496
ApeKI	GCWGC	1 cut(s)	806
ApoI	RAATTY	2 cut(s)	343, 593
Asp700I	GAANNNNTTC	2 cut(s)	345, 481
AsuHPI	GGTGA	1 cut(s)	227
AsuII	TTCGAA	3 cut(s)	400, 442, 475
AsuNHI	GCTAGC	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	571
BalI	TGGCCA	2 cut(s)	107, 498
BamHI	GGATCC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	568
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	793
BccI	CCATC	2 cut(s)	206, 377
BciT130I	CCWGG	1 cut(s)	466
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	170, 298
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	5 cut(s)	9, 327, 432, 702, 880
BfuAI	ACCTGC	2 cut(s)	259, 658
BisI	GCNGC	1 cut(s)	807
BlsI	GCNGC	1 cut(s)	808
Bme1390I	CCNGG	1 cut(s)	466
BmeRI	GACNNNNNGTC	1 cut(s)	786
BmgBI	CACGTC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	294, 570
BmrFI	CCNGG	1 cut(s)	466
BmrI	ACTGGG	1 cut(s)	753
BmsI	GCATC	1 cut(s)	718
BmtI	GCTAGC	1 cut(s)	435
BmuI	ACTGGG	1 cut(s)	753
Bpu14I	TTCGAA	3 cut(s)	400, 442, 475
BpuEI	CTTGAG	1 cut(s)	176
BsaBI	GATNNNNATC	2 cut(s)	216, 732
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	464
BsaWI	WCCGGW	2 cut(s)	82, 124
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	824
Bse1I	ACTGG	1 cut(s)	748
Bse3DI	GCAATG	1 cut(s)	499
Bse8I	GATNNNNATC	2 cut(s)	216, 732
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	1 cut(s)	464
BseGI	GGATG	2 cut(s)	262, 485
BseJI	GATNNNNATC	2 cut(s)	216, 732
BseLI	CCNNNNNNNGG	1 cut(s)	824
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	3 cut(s)	181, 291, 439
BseNI	ACTGG	1 cut(s)	748
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	1 cut(s)	793
BshFI	GGCC	2 cut(s)	107, 498
BshNI	GGYRCC	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	2 cut(s)	83, 125
BslFI	GGGAC	1 cut(s)	704
BslI	CCNNNNNNNGG	1 cut(s)	824
BsmAI	GTCTC	2 cut(s)	170, 298
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	704
BsnI	GGCC	2 cut(s)	107, 498
Bso31I	GGTCTC	1 cut(s)	298
Bsp119I	TTCGAA	3 cut(s)	400, 442, 475
Bsp1286I	GDGCHC	2 cut(s)	426, 571
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	5 cut(s)	217, 259, 292, 333, 529
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	2 cut(s)	107, 498
BspCNI	CTCAG	3 cut(s)	180, 292, 438
BspEI	TCCGGA	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	294, 570
BspMI	ACCTGC	2 cut(s)	259, 658
BspOI	GCTAGC	1 cut(s)	435
BspPI	GGATC	3 cut(s)	287, 300, 328
BspT104I	TTCGAA	3 cut(s)	400, 442, 475
BspT107I	GGYRCC	1 cut(s)	568
BspTNI	GGTCTC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	748
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	5 cut(s)	217, 259, 292, 333, 529
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	3 cut(s)	135, 354, 843
Bst6I	CTCTTC	2 cut(s)	48, 472
BstAPI	GCANNNNNTGC	1 cut(s)	421
BstBI	TTCGAA	3 cut(s)	400, 442, 475
BstC8I	GCNNGC	3 cut(s)	186, 433, 507
BstDEI	CTNAG	3 cut(s)	167, 300, 425
BstF5I	GGATG	2 cut(s)	262, 485
BstKTI	GATC	5 cut(s)	220, 262, 295, 336, 532
BstMAI	GTCTC	2 cut(s)	170, 298
BstMBI	GATC	5 cut(s)	217, 259, 292, 333, 529
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 421, 737, 803
BstNI	CCWGG	1 cut(s)	466
BstNSI	RCATGY	2 cut(s)	473, 509
BstSCI	CCNGG	1 cut(s)	464
BstSLI	GKGCMC	1 cut(s)	571
BstV1I	GCAGC	1 cut(s)	793
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	107, 498
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	2 cut(s)	262, 485
BveI	ACCTGC	2 cut(s)	259, 658
Cac8I	GCNNGC	3 cut(s)	186, 433, 507
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	5 cut(s)	154, 338, 470, 500, 506
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	3 cut(s)	167, 300, 425
DpnI	GATC	5 cut(s)	219, 261, 294, 335, 531
DpnII	GATC	5 cut(s)	217, 259, 292, 333, 529
DrdI	GACNNNNNNGTC	1 cut(s)	312
DriI	GACNNNNNGTC	1 cut(s)	786
DseDI	GACNNNNNNGTC	1 cut(s)	312
EaeI	YGGCCR	2 cut(s)	105, 496
Eam1104I	CTCTTC	2 cut(s)	48, 472
Eam1105I	GACNNNNNGTC	1 cut(s)	786
EarI	CTCTTC	2 cut(s)	48, 472
Eco31I	GGTCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	464
EcoT22I	ATGCAT	1 cut(s)	733
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	5 cut(s)	157, 341, 473, 503, 509
FaqI	GGGAC	1 cut(s)	704
FatI	CATG	5 cut(s)	153, 337, 469, 499, 505
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	807
FokI	GGATG	2 cut(s)	249, 472
Fsp4HI	GCNGC	1 cut(s)	807
FspBI	CTAG	5 cut(s)	9, 327, 432, 702, 880
GluI	GCNGC	1 cut(s)	807
HaeIII	GGCC	2 cut(s)	107, 498
HapII	CCGG	2 cut(s)	83, 125
Hin1II	CATG	5 cut(s)	157, 341, 473, 503, 509
HinfI	GANTC	5 cut(s)	205, 397, 482, 583, 705
HpaII	CCGG	2 cut(s)	83, 125
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	91, 839
Hpy188I	TCNGA	6 cut(s)	114, 170, 204, 396, 428, 780
Hpy188III	TCNNGA	3 cut(s)	125, 193, 209
Hpy8I	GTNNAC	2 cut(s)	91, 839
Hpy99I	CGWCG	1 cut(s)	641
HpyAV	CCTTC	3 cut(s)	68, 151, 862
HpyCH4III	ACNGT	3 cut(s)	135, 354, 843
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	3 cut(s)	509, 731, 809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 421, 737, 803
HpyF3I	CTNAG	3 cut(s)	167, 300, 425
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	5 cut(s)	157, 341, 473, 503, 509
Kpn2I	TCCGGA	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	5 cut(s)	217, 259, 292, 333, 529
LmnI	GCTCC	4 cut(s)	127, 357, 542, 803
Lsp1109I	GCAGC	1 cut(s)	793
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	5 cut(s)	9, 327, 432, 702, 880
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	827
MalI	GATC	5 cut(s)	219, 261, 294, 335, 531
MboI	GATC	5 cut(s)	217, 259, 292, 333, 529
MboII	GAAGA	8 cut(s)	35, 60, 63, 160, 414, 456, 465, 489
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	426, 571
MlsI	TGGCCA	2 cut(s)	107, 498
MluCI	AATT	4 cut(s)	343, 390, 593, 810
MluNI	TGGCCA	2 cut(s)	107, 498
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	842
MnlI	CCTC	6 cut(s)	37, 51, 200, 276, 653, 832
Mox20I	TGGCCA	2 cut(s)	107, 498
Mph1103I	ATGCAT	1 cut(s)	733
MroI	TCCGGA	1 cut(s)	124
MroXI	GAANNNNTTC	2 cut(s)	345, 481
MscI	TGGCCA	2 cut(s)	107, 498
MseI	TTAA	3 cut(s)	137, 272, 318
MslI	CAYNNNNRTG	2 cut(s)	329, 504
Msp20I	TGGCCA	2 cut(s)	107, 498
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	83, 125
MspR9I	CCNGG	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	4 cut(s)	104, 421, 737, 803
NdeII	GATC	5 cut(s)	217, 259, 292, 333, 529
NheI	GCTAGC	1 cut(s)	431
NlaIII	CATG	5 cut(s)	157, 341, 473, 503, 509
NlaIV	GGNNCC	2 cut(s)	294, 570
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	2 cut(s)	473, 509
NspV	TTCGAA	3 cut(s)	400, 442, 475
PaeI	GCATGC	1 cut(s)	509
PdmI	GAANNNNTTC	2 cut(s)	345, 481
PfeI	GAWTC	4 cut(s)	397, 482, 583, 705
PflMI	CCANNNNNTGG	1 cut(s)	824
PkrI	GCNGC	1 cut(s)	808
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	2 cut(s)	294, 570
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	2 cut(s)	329, 504
SaqAI	TTAA	3 cut(s)	137, 272, 318
SatI	GCNGC	1 cut(s)	807
Sau3AI	GATC	5 cut(s)	217, 259, 292, 333, 529
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	466
SduI	GDGCHC	2 cut(s)	426, 571
SfaNI	GCATC	1 cut(s)	718
SfuI	TTCGAA	3 cut(s)	400, 442, 475
SmiMI	CAYNNNNRTG	2 cut(s)	329, 504
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SpeI	ACTAGT	1 cut(s)	326
SphI	GCATGC	1 cut(s)	509
Sse9I	AATT	4 cut(s)	343, 390, 593, 810
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	5 cut(s)	9, 327, 432, 702, 880
StyD4I	CCNGG	1 cut(s)	464
TaaI	ACNGT	3 cut(s)	135, 354, 843
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	5 cut(s)	268, 400, 442, 475, 790
TasI	AATT	4 cut(s)	343, 390, 593, 810
TfiI	GAWTC	4 cut(s)	397, 482, 583, 705
Tru1I	TTAA	3 cut(s)	137, 272, 318
Tru9I	TTAA	3 cut(s)	137, 272, 318
TseI	GCWGC	1 cut(s)	806
TspDTI	ATGAA	6 cut(s)	170, 224, 354, 474, 606, 618
TspGWI	ACGGA	1 cut(s)	465
Van91I	CCANNNNNTGG	1 cut(s)	824
XapI	RAATTY	2 cut(s)	343, 593
XceI	RCATGY	2 cut(s)	473, 509
XmnI	GAANNNNTTC	2 cut(s)	345, 481
XspI	CTAG	5 cut(s)	9, 327, 432, 702, 880
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.