Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006525

Physical Location & Seq

Genomic Coordinates Reverse (-)

10301840 .. 10304650

Gene Structure 2811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006768

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCTTCTAACCGGTCTAATGTTTCCTCCCCAATCATTCCTCTTCTTGTTTGCTTCCTTCTTGTTTCTTCTTCAATATGTCCAGTAGTCTACGCCGCCGAAATGGCCAATCAGACTTTCAATCCGGAGCAACAGTTAAAGAAGCTGAAGAACATGAAGGCTCGTCTCAGAAAAATCAACAAGCCTGCCCTCAAGACATTTCAGAGTCCAGATGGTGATCTTATAGATTGTGTTCTTTCTCATCAGCAACCTGCTTTTGATCATCCTCAATTAAAAGGACAGAAGCCATTGGATCCACCTGAGAGACCAAAAGGTCTTAATCCCACTAGTATGATCCATGAAAATTTTCAACTATGGAGCTTGTCAGGTAATATATGCCCAGATGGAACAATTCCGATTCGAAGAACAAGAGAGCAAGACGTGCTCAGAGCTAGCTCGGTTAGAAGATACGGAAGAAAAACACCCAGGCATGTTCGAAGAGATTCATCCAGCAATGGCCATGAGCATGCAGTTGGGTATGTGAGTGGAGATCAATACTACGGAGCAAAAGCAAGTATCAATGTCTGGGCACCAAAGGTTGCGAATCAATATGAATTCAGCTTATCTCAAATGTGGGTCATTTCTGGTTCATTTGGCGACGACCTCAACACCATTGAAGCTGGTTGGCAGGTCAGCCCAGAGCTATATGGGGACGACTATCCTAGATTCTTTACTTATTGGACAACAGATGCTTATCAAGCAACTGGGTGCTACAATCTGCTGTGTTCGGGTTTTGTTCAGACGAATAGTCGAATAGCCATTGGAGCTGCAATTTCTCCAACTTCTGGTTACAATGGTGGACAGTTTGATATTAGTTTATTGATTTGGAAGGATCCAAAGCATGGAAATTGGTGGCTGGAATTTGGGAATGGGGTTCTAGTTGGATATTGGCCATCATTCTTGTTTACTCATCTTCAAGACCACGCAAGCATGGTACAATTTGGTGGAGAAGTTGTAAACTCAAGGCCTTCTGGATCTCACACTGCAACACAAATGGGAAGTGGTCATTTTGCAGGAGAAGGTTTTGGCAAGGCTTCTTACTTTAGAAACTTGCAGGTTGTGGATTGGGACAACAGCCTAATCCCATTATCAAACCTCAAAGTTTTGGCAGATCATCCAAGTTGCTATGACATCCAAGGAGGCATTAACAATTTTTGGGGGAATTACTTTTACTATGGTGGTCCTGGAAGAAATGTGAGGTGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

416

Amino Acids

46.26

Weight (kDa)

8.51

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	66 - 173	7.4e-37	Neprosin activation peptide
Neprosin	PF03080	197 - 408	7.5e-87	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10750 AT1G10750 AT1G23340 AT1G23340 AT1G23340 AT1G70550 AT1G70550
fragaria_vesca	FvH4_4g25820 FvH4_4g25820 FvH4_4g25820 FvH4_4g25820
malus_domestica	MD13G1097000.v1.1 MD16G1097900.v1.1
prunus_persica	Prupe.1G248600_v2.0.a1
pyrus_communis	pycom13g08470 pycom16g08340
rosa_chinensis	RchiOBHm_Chr4g0433271
rosa_laevigata	RLG00000006768
rosa_multiflora	Rmu_sc0022950.1_g000002
rosa_roxburghii	Rroxscaffold_5G00374830
rosa_rugosa	Rorug04G0267600
rosa_samantha	Rh4AG322100 Rh4BG329500 Rh4CG344800 Rh4DG326200
rosa_wichuraiana	Rw4G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	312
Acc36I	ACCTGC	3 cut(s)	259, 658, 1084
AccB1I	GGYRCC	1 cut(s)	568
AccB7I	CCANNNNNTGG	2 cut(s)	824, 881
AccI	GTMKAC	1 cut(s)	90
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	6 cut(s)	287, 300, 328, 866, 879, 1021
AcoI	YGGCCR	3 cut(s)	105, 496, 929
AcsI	RAATTY	3 cut(s)	343, 593, 899
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	975
AfiI	CCNNNNNNNGG	2 cut(s)	824, 881
AgeI	ACCGGT	1 cut(s)	12
AgsI	TTSAA	5 cut(s)	75, 121, 350, 656, 956
AhdI	GACNNNNNGTC	1 cut(s)	786
AhlI	ACTAGT	1 cut(s)	326
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	2 cut(s)	464, 1222
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	8 cut(s)	145, 360, 431, 435, 600, 659, 682, 806
AluI	AGCT	8 cut(s)	145, 360, 431, 435, 600, 659, 682, 806
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	2 cut(s)	170, 298
AlwI	GGATC	6 cut(s)	287, 300, 328, 866, 879, 1021
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	4 cut(s)	105, 496, 929, 1004
ApeKI	GCWGC	1 cut(s)	806
ApoI	RAATTY	3 cut(s)	343, 593, 899
AsiGI	ACCGGT	1 cut(s)	12
Asp700I	GAANNNNTTC	2 cut(s)	345, 481
AspS9I	GGNCC	1 cut(s)	1220
AsuHPI	GGTGA	1 cut(s)	227
AsuII	TTCGAA	2 cut(s)	400, 475
AsuNHI	GCTAGC	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	1220
BaeGI	GKGCMC	1 cut(s)	571
BalI	TGGCCA	3 cut(s)	107, 498, 931
BamHI	GGATCC	2 cut(s)	292, 871
BanI	GGYRCC	1 cut(s)	568
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	793
BccI	CCATC	3 cut(s)	206, 377, 940
BciT130I	CCWGG	2 cut(s)	466, 1224
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	170, 298
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	4 cut(s)	327, 432, 702, 917
BfuAI	ACCTGC	3 cut(s)	259, 658, 1084
BglI	GCCNNNNNGGC	1 cut(s)	104
BisI	GCNGC	2 cut(s)	96, 807
BlsI	GCNGC	2 cut(s)	97, 808
Bme1390I	CCNGG	2 cut(s)	466, 1224
Bme18I	GGWCC	1 cut(s)	1220
BmeRI	GACNNNNNGTC	1 cut(s)	786
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	1220
BmiI	GGNNCC	3 cut(s)	294, 570, 873
BmrFI	CCNGG	2 cut(s)	466, 1224
BmrI	ACTGGG	1 cut(s)	753
BmsI	GCATC	1 cut(s)	718
BmtI	GCTAGC	1 cut(s)	435
BmuI	ACTGGG	1 cut(s)	753
Bpu14I	TTCGAA	2 cut(s)	400, 475
BpuEI	CTTGAG	2 cut(s)	176, 985
BsaBI	GATNNNNATC	2 cut(s)	216, 732
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	2 cut(s)	464, 1174
BsaWI	WCCGGW	2 cut(s)	12, 124
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 978, 1008
Bsc4I	CCNNNNNNNGG	2 cut(s)	824, 881
Bse118I	RCCGGY	1 cut(s)	12
Bse1I	ACTGG	2 cut(s)	83, 748
Bse3DI	GCAATG	1 cut(s)	499
Bse8I	GATNNNNATC	2 cut(s)	216, 732
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	466, 1224
BseDI	CCNNGG	2 cut(s)	464, 1174
BseGI	GGATG	4 cut(s)	262, 485, 1153, 1170
BseJI	GATNNNNATC	2 cut(s)	216, 732
BseLI	CCNNNNNNNGG	2 cut(s)	824, 881
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	3 cut(s)	181, 291, 439
BseNI	ACTGG	2 cut(s)	83, 748
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	1 cut(s)	793
BshFI	GGCC	4 cut(s)	107, 498, 931, 1006
BshNI	GGYRCC	1 cut(s)	568
BshTI	ACCGGT	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	2 cut(s)	13, 125
BslFI	GGGAC	3 cut(s)	704, 1121, 1227
BslI	CCNNNNNNNGG	2 cut(s)	824, 881
BsmAI	GTCTC	2 cut(s)	170, 298
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	3 cut(s)	704, 1121, 1227
BsnI	GGCC	4 cut(s)	107, 498, 931, 1006
Bso31I	GGTCTC	1 cut(s)	298
Bsp119I	TTCGAA	2 cut(s)	400, 475
Bsp1286I	GDGCHC	2 cut(s)	426, 571
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	8 cut(s)	217, 259, 292, 333, 529, 871, 1013, 1150
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	4 cut(s)	107, 498, 931, 1006
BspCNI	CTCAG	3 cut(s)	180, 292, 438
BspEI	TCCGGA	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	294, 570, 873
BspMI	ACCTGC	3 cut(s)	259, 658, 1084
BspOI	GCTAGC	1 cut(s)	435
BspPI	GGATC	6 cut(s)	287, 300, 328, 866, 879, 1021
BspT104I	TTCGAA	2 cut(s)	400, 475
BspT107I	GGYRCC	1 cut(s)	568
BspTNI	GGTCTC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	83, 748
BssAI	RCCGGY	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	464, 1174
BssMI	GATC	8 cut(s)	217, 259, 292, 333, 529, 871, 1013, 1150
BssT1I	CCWWGG	1 cut(s)	1174
Bst2UI	CCWGG	2 cut(s)	466, 1224
Bst4CI	ACNGT	2 cut(s)	135, 843
Bst6I	CTCTTC	2 cut(s)	48, 472
BstAPI	GCANNNNNTGC	1 cut(s)	421
BstBI	TTCGAA	2 cut(s)	400, 475
BstC8I	GCNNGC	4 cut(s)	186, 433, 507, 967
BstDEI	CTNAG	3 cut(s)	167, 300, 425
BstF5I	GGATG	4 cut(s)	262, 485, 1153, 1170
BstKTI	GATC	8 cut(s)	220, 262, 295, 336, 532, 874, 1016, 1153
BstMAI	GTCTC	2 cut(s)	170, 298
BstMBI	GATC	8 cut(s)	217, 259, 292, 333, 529, 871, 1013, 1150
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 421, 737, 803
BstNI	CCWGG	2 cut(s)	466, 1224
BstNSI	RCATGY	2 cut(s)	473, 509
BstSCI	CCNGG	2 cut(s)	464, 1222
BstSLI	GKGCMC	1 cut(s)	571
BstV1I	GCAGC	1 cut(s)	793
BstX2I	RGATCY	3 cut(s)	292, 871, 1013
BstYI	RGATCY	3 cut(s)	292, 871, 1013
BsuRI	GGCC	4 cut(s)	107, 498, 931, 1006
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	4 cut(s)	262, 485, 1153, 1170
BtsI	GCAGTG	1 cut(s)	1020
BtsIMutI	CAGTG	1 cut(s)	1020
BveI	ACCTGC	3 cut(s)	259, 658, 1084
Cac8I	GCNNGC	4 cut(s)	186, 433, 507, 967
Cfr10I	RCCGGY	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	1220
Csp6I	GTAC	1 cut(s)	974
CspAI	ACCGGT	1 cut(s)	12
CviAII	CATG	7 cut(s)	154, 338, 470, 500, 506, 881, 970
CviQI	GTAC	1 cut(s)	974
DdeI	CTNAG	3 cut(s)	167, 300, 425
DpnI	GATC	8 cut(s)	219, 261, 294, 335, 531, 873, 1015, 1152
DpnII	GATC	8 cut(s)	217, 259, 292, 333, 529, 871, 1013, 1150
DrdI	GACNNNNNNGTC	1 cut(s)	312
DriI	GACNNNNNGTC	1 cut(s)	786
DseDI	GACNNNNNNGTC	1 cut(s)	312
EaeI	YGGCCR	3 cut(s)	105, 496, 929
Eam1104I	CTCTTC	2 cut(s)	48, 472
Eam1105I	GACNNNNNGTC	1 cut(s)	786
EarI	CTCTTC	2 cut(s)	48, 472
Eco130I	CCWWGG	1 cut(s)	1174
Eco147I	AGGCCT	1 cut(s)	1006
Eco31I	GGTCTC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	1220
Eco57I	CTGAAG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	593
EcoRII	CCWGG	2 cut(s)	464, 1222
EcoT14I	CCWWGG	1 cut(s)	1174
ErhI	CCWWGG	1 cut(s)	1174
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	7 cut(s)	157, 341, 473, 503, 509, 884, 973
FaqI	GGGAC	3 cut(s)	704, 1121, 1227
FatI	CATG	7 cut(s)	153, 337, 469, 499, 505, 880, 969
FbaI	TGATCA	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	96, 807
FokI	GGATG	4 cut(s)	249, 472, 1140, 1157
Fsp4HI	GCNGC	2 cut(s)	96, 807
FspBI	CTAG	4 cut(s)	327, 432, 702, 917
GluI	GCNGC	2 cut(s)	96, 807
HaeIII	GGCC	4 cut(s)	107, 498, 931, 1006
HapII	CCGG	2 cut(s)	13, 125
Hin1II	CATG	7 cut(s)	157, 341, 473, 503, 509, 884, 973
HinfI	GANTC	5 cut(s)	205, 397, 482, 583, 705
HpaII	CCGG	2 cut(s)	13, 125
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	4 cut(s)	91, 839, 945, 997
Hpy188I	TCNGA	6 cut(s)	114, 170, 204, 396, 428, 780
Hpy188III	TCNNGA	5 cut(s)	125, 193, 209, 956, 1011
Hpy8I	GTNNAC	4 cut(s)	91, 839, 945, 997
Hpy99I	CGWCG	1 cut(s)	641
HpyAV	CCTTC	5 cut(s)	68, 151, 862, 1017, 1052
HpyCH4III	ACNGT	2 cut(s)	135, 843
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	5 cut(s)	509, 809, 1025, 1052, 1093
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 421, 737, 803
HpyF3I	CTNAG	3 cut(s)	167, 300, 425
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	7 cut(s)	157, 341, 473, 503, 509, 884, 973
Kpn2I	TCCGGA	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	8 cut(s)	217, 259, 292, 333, 529, 871, 1013, 1150
LmnI	GCTCC	4 cut(s)	127, 357, 542, 803
Lsp1109I	GCAGC	1 cut(s)	793
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	4 cut(s)	327, 432, 702, 917
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	827
MalI	GATC	8 cut(s)	219, 261, 294, 335, 531, 873, 1015, 1152
MboI	GATC	8 cut(s)	217, 259, 292, 333, 529, 871, 1013, 1150
MflI	RGATCY	3 cut(s)	292, 871, 1013
MhlI	GDGCHC	2 cut(s)	426, 571
MlsI	TGGCCA	3 cut(s)	107, 498, 931
MluNI	TGGCCA	3 cut(s)	107, 498, 931
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	2 cut(s)	842, 901
MnlI	CCTC	8 cut(s)	37, 51, 200, 276, 653, 1145, 1172, 1230
Mox20I	TGGCCA	3 cut(s)	107, 498, 931
MroI	TCCGGA	1 cut(s)	124
MroXI	GAANNNNTTC	2 cut(s)	345, 481
MscI	TGGCCA	3 cut(s)	107, 498, 931
MseI	TTAA	4 cut(s)	137, 272, 318, 1185
MslI	CAYNNNNRTG	2 cut(s)	329, 504
Msp20I	TGGCCA	3 cut(s)	107, 498, 931
MspI	CCGG	2 cut(s)	13, 125
MspR9I	CCNGG	2 cut(s)	466, 1224
MvaI	CCWGG	2 cut(s)	466, 1224
MwoI	GCNNNNNNNGC	4 cut(s)	104, 421, 737, 803
NdeII	GATC	8 cut(s)	217, 259, 292, 333, 529, 871, 1013, 1150
NheI	GCTAGC	1 cut(s)	431
NlaIII	CATG	7 cut(s)	157, 341, 473, 503, 509, 884, 973
NlaIV	GGNNCC	3 cut(s)	294, 570, 873
NspI	RCATGY	2 cut(s)	473, 509
NspV	TTCGAA	2 cut(s)	400, 475
PaeI	GCATGC	1 cut(s)	509
PceI	AGGCCT	1 cut(s)	1006
PdmI	GAANNNNTTC	2 cut(s)	345, 481
PfeI	GAWTC	4 cut(s)	397, 482, 583, 705
PflMI	CCANNNNNTGG	2 cut(s)	824, 881
PfoI	TCCNGGA	1 cut(s)	1222
PinAI	ACCGGT	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	97, 808
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	464, 1222
PspGI	CCWGG	2 cut(s)	464, 1222
PspN4I	GGNNCC	3 cut(s)	294, 570, 873
PspPI	GGNCC	1 cut(s)	1220
PsuI	RGATCY	3 cut(s)	292, 871, 1013
RsaI	GTAC	1 cut(s)	975
RsaNI	GTAC	1 cut(s)	974
RseI	CAYNNNNRTG	2 cut(s)	329, 504
SaqAI	TTAA	4 cut(s)	137, 272, 318, 1185
SatI	GCNGC	2 cut(s)	96, 807
Sau3AI	GATC	8 cut(s)	217, 259, 292, 333, 529, 871, 1013, 1150
Sau96I	GGNCC	1 cut(s)	1220
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	466, 1224
SduI	GDGCHC	2 cut(s)	426, 571
SfaNI	GCATC	1 cut(s)	718
SfuI	TTCGAA	2 cut(s)	400, 475
SinI	GGWCC	1 cut(s)	1220
SmiMI	CAYNNNNRTG	2 cut(s)	329, 504
SmlI	CTYRAG	2 cut(s)	191, 1000
SmoI	CTYRAG	2 cut(s)	191, 1000
SpeI	ACTAGT	1 cut(s)	326
SphI	GCATGC	1 cut(s)	509
SseBI	AGGCCT	1 cut(s)	1006
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	4 cut(s)	327, 432, 702, 917
StuI	AGGCCT	1 cut(s)	1006
StyD4I	CCNGG	2 cut(s)	464, 1222
StyI	CCWWGG	1 cut(s)	1174
TaaI	ACNGT	2 cut(s)	135, 843
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	3 cut(s)	400, 475, 790
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	4 cut(s)	397, 482, 583, 705
Tru1I	TTAA	4 cut(s)	137, 272, 318, 1185
Tru9I	TTAA	4 cut(s)	137, 272, 318, 1185
TscAI	CASTG	1 cut(s)	1027
TseI	GCWGC	1 cut(s)	806
TspDTI	ATGAA	5 cut(s)	170, 354, 474, 606, 618
TspGWI	ACGGA	2 cut(s)	465, 555
TspRI	CASTG	1 cut(s)	1027
Van91I	CCANNNNNTGG	2 cut(s)	824, 881
VpaK11BI	GGWCC	1 cut(s)	1220
XapI	RAATTY	3 cut(s)	343, 593, 899
XceI	RCATGY	2 cut(s)	473, 509
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	2 cut(s)	345, 481
XspI	CTAG	4 cut(s)	327, 432, 702, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.