Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004355

Physical Location & Seq

Genomic Coordinates Forward (+)

8314853 .. 8315737

Gene Structure 885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTAGAATCATCAGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGATCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTAGCTGATTACAACATCCAGAAAGAGTCGACGCTTCATTTGGTTCTACGTCTGAGAGGAGGTGCGAAGAAGAGGAAGAAGAAGACGTACACGAAACCTAAGAAGATTAAGCATACGCACAAGAAAGTGAAGCTAGCAGTTCTGCAGTTTTACAAGGTTGATGGAAGTGGGAAAGTTCAGAGGTTGAAGAAAGAGTGTCCTTCTGTTAGTTGTGGTCCTGGAACTTTCATGGCGAGTCATTTCGATAGGCATTATTGTGGGAAATGTGGAACTACTTACGTGTTCAAGAAGGCTGATGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0012505 GO:0015935 GO:0016020 GO:0019538 GO:0019941 GO:0022626 GO:0022627 GO:0030054 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27 ubiquitin

Protein Analysis

156

Amino Acids

17.67

Weight (kDa)

9.77

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	1.5e-17	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.9e-32	Ubiquitin family
Ribosomal_S27	PF01599	102 - 147	3.9e-25	Ribosomal protein S27a

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23410 AT2G47110 AT2G47110 AT3G62250
fragaria_vesca	FvH4_1g25981 FvH4_4g32881 FvH4_4g32881
malus_domestica	MD09G1293300.v1.1 MD13G1094800.v1.1 MD16G1095800.v1.1 MD17G1280900.v1.1
prunus_persica	Prupe.1G250600_v2.0.a1 Prupe.3G004600_v2.0.a1
pyrus_communis	pycom13g08260 pycom16g08190
rosa_chinensis	RchiOBHm_Chr3g0485301 RchiOBHm_Chr3g0485331 RchiOBHm_Chr3g0485341 RchiOBHm_Chr4g0441921
rosa_roxburghii	Rroxscaffold_6G00396770 Rroxscaffold_6G00397010
rosa_samantha	Rh3AG267000 Rh3AG267200 Rh3AG267300 Rh3CG301100 Rh4AG388700 Rh4CG417500
rosa_wichuraiana	Rw3G023720 Rw3G023790 Rw3G023830 Rw3G023890 Rw4G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	194
AclWI	GGATC	2 cut(s)	82, 123
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	27, 97
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	2 cut(s)	352, 451
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	2 cut(s)	170, 298
AluI	AGCT	2 cut(s)	170, 298
AlwI	GGATC	2 cut(s)	82, 123
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AspS9I	GGNCC	1 cut(s)	380
AsuNHI	GCTAGC	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbsI	GAAGAC	2 cut(s)	38, 254
BccI	CCATC	2 cut(s)	149, 320
BciT130I	CCWGG	1 cut(s)	384
BfaI	CTAG	2 cut(s)	167, 299
BfmI	CTRYAG	1 cut(s)	308
BglII	AGATCT	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	384
BmtI	GCTAGC	1 cut(s)	302
BpiI	GAAGAC	2 cut(s)	38, 254
BsaAI	YACGTR	1 cut(s)	445
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 97
BseBI	CCWGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	27, 97
BseMII	CTCAG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	113, 138
BslI	CCNNNNNNNGG	2 cut(s)	27, 97
Bsp143I	GATC	4 cut(s)	6, 87, 115, 129
BspCNI	CTCAG	1 cut(s)	210
BspMAI	CTGCAG	1 cut(s)	312
BspOI	GCTAGC	1 cut(s)	302
BspPI	GGATC	2 cut(s)	82, 123
BssMI	GATC	4 cut(s)	6, 87, 115, 129
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	2 cut(s)	230, 459
BstBAI	YACGTR	1 cut(s)	445
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	3 cut(s)	43, 218, 264
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	4 cut(s)	9, 90, 118, 132
BstMBI	GATC	4 cut(s)	6, 87, 115, 129
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	308
BstV2I	GAAGAC	2 cut(s)	38, 254
BstX2I	RGATCY	2 cut(s)	6, 87
BstYI	RGATCY	2 cut(s)	6, 87
BtsCI	GGATG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	380
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	3 cut(s)	170, 298, 458
CviKI_1	RGCY	3 cut(s)	170, 298, 458
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	3 cut(s)	43, 218, 264
DpnI	GATC	4 cut(s)	8, 89, 117, 131
DpnII	GATC	4 cut(s)	6, 87, 115, 129
Eam1104I	CTCTTC	2 cut(s)	230, 459
EarI	CTCTTC	2 cut(s)	230, 459
Eco47I	GGWCC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	382
FaeI	CATG	1 cut(s)	397
FaiI	YATR	2 cut(s)	279, 395
FatI	CATG	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	194
FokI	GGATG	1 cut(s)	167
FspBI	CTAG	2 cut(s)	167, 299
HapII	CCGG	2 cut(s)	113, 138
HgaI	GACGC	1 cut(s)	205
Hin1II	CATG	1 cut(s)	397
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	4 cut(s)	53, 105, 191, 400
HpaII	CCGG	2 cut(s)	113, 138
Hpy166II	GTNNAC	2 cut(s)	195, 255
Hpy188I	TCNGA	3 cut(s)	61, 219, 345
Hpy188III	TCNNGA	3 cut(s)	13, 184, 451
Hpy8I	GTNNAC	2 cut(s)	195, 255
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	3 cut(s)	95, 375, 448
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4IV	ACGT	3 cut(s)	214, 251, 444
HpyCH4V	TGCA	2 cut(s)	4, 310
HpyF3I	CTNAG	3 cut(s)	43, 218, 264
HpySE526I	ACGT	3 cut(s)	214, 251, 444
Hsp92II	CATG	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	6, 87, 115, 129
LpnPI	CCDG	5 cut(s)	126, 151, 197, 369, 396
MaeI	CTAG	2 cut(s)	167, 299
MaeII	ACGT	3 cut(s)	214, 251, 444
MalI	GATC	4 cut(s)	8, 89, 117, 131
MboI	GATC	4 cut(s)	6, 87, 115, 129
MfeI	CAATTG	1 cut(s)	146
MflI	RGATCY	2 cut(s)	6, 87
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	2 cut(s)	200, 409
MnlI	CCTC	5 cut(s)	40, 215, 218, 231, 339
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	420
MspI	CCGG	2 cut(s)	113, 138
MspR9I	CCNGG	1 cut(s)	384
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	384
NdeII	GATC	4 cut(s)	6, 87, 115, 129
NheI	GCTAGC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	53, 105
PfoI	TCCNGGA	1 cut(s)	382
PleI	GAGTC	2 cut(s)	199, 408
PpsI	GAGTC	2 cut(s)	199, 408
Ppu21I	YACGTR	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspPI	GGNCC	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	312
PsuI	RGATCY	2 cut(s)	6, 87
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	420
SalI	GTCGAC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	273
Sau3AI	GATC	4 cut(s)	6, 87, 115, 129
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	2 cut(s)	200, 409
ScrFI	CCNGG	1 cut(s)	384
SfcI	CTRYAG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	420
Sse9I	AATT	1 cut(s)	146
SspMI	CTAG	2 cut(s)	167, 299
StyD4I	CCNGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	126
TaiI	ACGT	3 cut(s)	217, 254, 447
TaqI	TCGA	3 cut(s)	69, 194, 408
TasI	AATT	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	53, 105
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TspDTI	ATGAA	2 cut(s)	191, 382
VpaK11BI	GGWCC	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	2 cut(s)	167, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.