Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004355

Physical Location & Seq

Genomic Coordinates Forward (+)

19344635 .. 19345345

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTCGAGGTCGAGTCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTACCTTAGCCGATTACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCTTCGTCTCCGTGGAGGTGCTAAGAAGAGGAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCACAAGCACAAGAAGGTCAAGCTCGCTGTTCTTCAGTTCTACAAGGTTGATGGTTCAGGTAAGGTTCAGCGTTTGAGGAAGGAGTGCCCTAACGCAACCTGTGGTGCTGGGACTTTCATGGCGAGTCATTTCGATCGTCACTACTGTGGTAAGTGTGGTCTCACCTACGTTTACCAGAAAGAAGGAGCTCAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005840 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015935 GO:0019538 GO:0019941 GO:0022626 GO:0022627 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27 ubiquitin

Protein Analysis

157

Amino Acids

17.81

Weight (kDa)

9.83

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	1.5e-17	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.9e-32	Ubiquitin family
Ribosomal_S27	PF01599	102 - 147	9.5e-26	Ribosomal protein S27a

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23410 AT2G47110 AT2G47110 AT3G62250
fragaria_vesca	FvH4_1g25981 FvH4_4g32881 FvH4_4g32881
malus_domestica	MD09G1293300.v1.1 MD13G1094800.v1.1 MD16G1095800.v1.1 MD17G1280900.v1.1
prunus_persica	Prupe.1G250600_v2.0.a1 Prupe.3G004600_v2.0.a1
pyrus_communis	pycom13g08260 pycom16g08190
rosa_chinensis	RchiOBHm_Chr3g0485301 RchiOBHm_Chr3g0485331 RchiOBHm_Chr3g0485341 RchiOBHm_Chr4g0441921
rosa_roxburghii	Rroxscaffold_6G00396770 Rroxscaffold_6G00397010
rosa_samantha	Rh3AG267000 Rh3AG267200 Rh3AG267300 Rh3CG301100 Rh4AG388700 Rh4CG417500
rosa_wichuraiana	Rw3G023720 Rw3G023790 Rw3G023830 Rw3G023890 Rw4G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	2 cut(s)	27, 97
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	3 cut(s)	148, 298, 464
AluI	AGCT	3 cut(s)	148, 298, 464
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	2 cut(s)	221, 440
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	121, 145
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	194, 430
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	365
BaeI	ACNNNNGTAYC	2 cut(s)	145, 178
BanII	GRGCYC	1 cut(s)	466
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbsI	GAAGAC	3 cut(s)	38, 159, 254
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	2 cut(s)	133, 157
BccI	CCATC	2 cut(s)	74, 320
BcoDI	GTCTC	2 cut(s)	221, 440
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	122, 146
BlsI	GCNGC	2 cut(s)	123, 147
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	115
BpiI	GAAGAC	3 cut(s)	38, 159, 254
Bpu10I	CCTNAGC	2 cut(s)	166, 465
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 97
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	27, 97
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	2 cut(s)	133, 157
BseYI	CCCAGC	1 cut(s)	383
Bsh1285I	CGRYCG	1 cut(s)	412
BshFI	GGCC	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	113, 138
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	27, 97
BsmAI	GTCTC	2 cut(s)	221, 440
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	440
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	365, 466
Bsp143I	GATC	5 cut(s)	6, 36, 87, 270, 409
BspANI	GGCC	1 cut(s)	83
BspPI	GGATC	1 cut(s)	82
BspTNI	GGTCTC	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	5 cut(s)	6, 36, 87, 270, 409
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	4 cut(s)	166, 231, 264, 465
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	5 cut(s)	9, 39, 90, 273, 412
BstMAI	GTCTC	2 cut(s)	221, 440
BstMBI	GATC	5 cut(s)	6, 36, 87, 270, 409
BstMCI	CGRYCG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	2 cut(s)	133, 157
BstV2I	GAAGAC	3 cut(s)	38, 159, 254
BstX2I	RGATCY	2 cut(s)	6, 87
BstYI	RGATCY	2 cut(s)	6, 87
BsuRI	GGCC	1 cut(s)	83
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	6 cut(s)	83, 148, 170, 262, 298, 464
CviKI_1	RGCY	6 cut(s)	83, 148, 170, 262, 298, 464
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	4 cut(s)	166, 231, 264, 465
DpnI	GATC	5 cut(s)	8, 38, 89, 272, 411
DpnII	GATC	5 cut(s)	6, 36, 87, 270, 409
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Ecl136II	GAGCTC	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	466
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	466
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	1 cut(s)	397
FaiI	YATR	1 cut(s)	395
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	122, 146
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	2 cut(s)	122, 146
GluI	GCNGC	2 cut(s)	122, 146
GsaI	CCCAGC	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	2 cut(s)	113, 138
Hin1II	CATG	1 cut(s)	397
HinfI	GANTC	4 cut(s)	53, 105, 191, 400
HpaII	CCGG	2 cut(s)	113, 138
HphI	GGTGA	2 cut(s)	194, 430
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	4 cut(s)	13, 44, 184, 467
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	6 cut(s)	95, 181, 221, 283, 349, 452
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	2 cut(s)	160, 444
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	4 cut(s)	166, 231, 264, 465
HpySE526I	ACGT	2 cut(s)	160, 444
Hsp92II	CATG	1 cut(s)	397
Kzo9I	GATC	5 cut(s)	6, 36, 87, 270, 409
LmnI	GCTCC	1 cut(s)	461
LpnPI	CCDG	9 cut(s)	126, 131, 151, 197, 318, 369, 388, 452, 464
Lsp1109I	GCAGC	2 cut(s)	133, 157
MaeII	ACGT	2 cut(s)	160, 444
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	5 cut(s)	8, 38, 89, 272, 411
MboI	GATC	5 cut(s)	6, 36, 87, 270, 409
MboII	GAAGA	8 cut(s)	43, 164, 247, 253, 256, 259, 280, 299
MflI	RGATCY	2 cut(s)	6, 87
MhlI	GDGCHC	2 cut(s)	365, 466
MlyI	GAGTC	2 cut(s)	62, 409
MnlI	CCTC	5 cut(s)	40, 67, 218, 231, 345
MslI	CAYNNNNRTG	1 cut(s)	420
MspI	CCGG	2 cut(s)	113, 138
NdeII	GATC	5 cut(s)	6, 36, 87, 270, 409
NlaIII	CATG	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	413
OliI	CACNNNNGTG	1 cut(s)	420
PaeR7I	CTCGAG	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	105, 191
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	123, 147
Ple19I	CGATCG	1 cut(s)	412
PleI	GAGTC	2 cut(s)	61, 408
PpsI	GAGTC	2 cut(s)	61, 408
Psp124BI	GAGCTC	1 cut(s)	466
PspFI	CCCAGC	1 cut(s)	383
PspPI	GGNCC	1 cut(s)	115
PsuI	RGATCY	2 cut(s)	6, 87
PsyI	GACNNNGTC	1 cut(s)	74
PvuI	CGATCG	1 cut(s)	412
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
RseI	CAYNNNNRTG	1 cut(s)	420
SacI	GAGCTC	1 cut(s)	466
SatI	GCNGC	2 cut(s)	122, 146
Sau3AI	GATC	5 cut(s)	6, 36, 87, 270, 409
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	62, 409
SduI	GDGCHC	2 cut(s)	365, 466
Sfr274I	CTCGAG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	115
SlaI	CTCGAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SstI	GAGCTC	1 cut(s)	466
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	2 cut(s)	163, 447
TaqI	TCGA	5 cut(s)	45, 51, 69, 150, 408
TfiI	GAWTC	2 cut(s)	105, 191
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	2 cut(s)	121, 145
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	382
TspGWI	ACGGA	2 cut(s)	171, 209
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.