Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004355

Physical Location & Seq

Genomic Coordinates Forward (+)

289158 .. 289878

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G004600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACTATAACCCTAGAGGTTGAGTCTTCCGACACCATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAACGTCTCATCTTCGCAGGGAAGCAGCTCGAGGACGGCCGAACCCTAGCTGACTACAACATCCAGAAGGAATCGACTCTGCACCTGGTGCTTCGTCTCCGTGGTGGAGCCAAGAAGCGTAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCCTCCAGTTCTATAAGGTCGACGATTCTGGAAAGGTCCAGAGGCTCAGGAAGGAGTGCCCCAATGCTGAGTGCGGCGCCGGGACTTTCATGGCCAACCATTTCGACAGGCACTACTGTGGTAAGTGCGGCCTCACCTATGTCTATCAGAAGGCTGGCGGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27 ubiquitin

Protein Analysis

157

Amino Acids

17.7

Weight (kDa)

9.81

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23410 AT2G47110 AT2G47110 AT3G62250
fragaria_vesca	FvH4_1g25981 FvH4_4g32881 FvH4_4g32881
malus_domestica	MD09G1293300.v1.1 MD13G1094800.v1.1 MD16G1095800.v1.1 MD17G1280900.v1.1
prunus_persica	Prupe.1G250600_v2.0.a1 Prupe.3G004600_v2.0.a1
pyrus_communis	pycom13g08260 pycom16g08190
rosa_chinensis	RchiOBHm_Chr3g0485301 RchiOBHm_Chr3g0485331 RchiOBHm_Chr3g0485341 RchiOBHm_Chr4g0441921
rosa_roxburghii	Rroxscaffold_6G00396770 Rroxscaffold_6G00397010
rosa_samantha	Rh3AG267000 Rh3AG267200 Rh3AG267300 Rh3CG301100 Rh4AG388700 Rh4CG417500
rosa_wichuraiana	Rw3G023720 Rw3G023790 Rw3G023830 Rw3G023890 Rw4G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	324
AciI	CCGC	3 cut(s)	378, 432, 462
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	2 cut(s)	157, 396
AcyI	GRCGYC	1 cut(s)	381
AdeI	CACNNNGTG	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	27, 97
AjnI	CCWGG	1 cut(s)	204
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	3 cut(s)	148, 170, 298
AluI	AGCT	3 cut(s)	148, 170, 298
Alw26I	GTCTC	2 cut(s)	131, 221
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	157, 396, 433
ApeKI	GCWGC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbsI	GAAGAC	3 cut(s)	38, 48, 254
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	2 cut(s)	172, 287
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	131, 221
BfaI	CTAG	2 cut(s)	44, 167
BfoI	RGCGCY	1 cut(s)	384
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	4 cut(s)	146, 379, 433, 463
BlsI	GCNGC	4 cut(s)	147, 380, 434, 464
Bme1390I	CCNGG	2 cut(s)	206, 385
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	229, 382
BmrFI	CCNGG	2 cut(s)	206, 385
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	3 cut(s)	38, 48, 254
BpmI	CTGGAG	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 97
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	105, 180
BseLI	CCNNNNNNNGG	2 cut(s)	27, 97
BseMII	CTCAG	2 cut(s)	363, 364
BseNI	ACTGG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	365
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	159, 398, 435
BshNI	GGYRCC	1 cut(s)	380
BsiEI	CGRYCG	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	27, 97
BsmAI	GTCTC	2 cut(s)	131, 221
BsmBI	CGTCTC	2 cut(s)	131, 221
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	3 cut(s)	159, 398, 435
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	3 cut(s)	6, 87, 270
BspACI	CCGC	3 cut(s)	378, 432, 462
BspANI	GGCC	3 cut(s)	159, 398, 435
BspCNI	CTCAG	2 cut(s)	363, 364
BspLI	GGNNCC	2 cut(s)	229, 382
BspPI	GGATC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	6, 87, 270
BssNI	GRCGYC	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	422
BstACI	GRCGYC	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstC8I	GCNNGC	2 cut(s)	300, 460
BstDEI	CTNAG	2 cut(s)	350, 372
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	105, 180
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	3 cut(s)	9, 90, 273
BstMAI	GTCTC	2 cut(s)	131, 221
BstMBI	GATC	3 cut(s)	6, 87, 270
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	204, 383
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	3 cut(s)	38, 48, 254
BstX2I	RGATCY	2 cut(s)	6, 87
BstYI	RGATCY	2 cut(s)	6, 87
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	159, 398, 435
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	105, 180
Cac8I	GCNNGC	2 cut(s)	300, 460
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	340
CsiI	ACCWGGT	1 cut(s)	204
CviAII	CATG	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	350, 372
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	3 cut(s)	8, 89, 272
DpnII	GATC	3 cut(s)	6, 87, 270
DraIII	CACNNNGTG	1 cut(s)	208
EaeI	YGGCCR	2 cut(s)	157, 396
EagI	CGGCCG	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	340
Eco52I	CGGCCG	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	204
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
Esp3I	CGTCTC	2 cut(s)	131, 221
FaeI	CATG	1 cut(s)	397
FaiI	YATR	4 cut(s)	38, 318, 395, 444
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	4 cut(s)	146, 379, 433, 463
FokI	GGATG	2 cut(s)	92, 167
Fsp4HI	GCNGC	4 cut(s)	146, 379, 433, 463
FspBI	CTAG	2 cut(s)	44, 167
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	4 cut(s)	146, 379, 433, 463
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	3 cut(s)	159, 398, 435
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	1 cut(s)	383
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	4 cut(s)	53, 191, 196, 329
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	61, 453
Hpy188III	TCNNGA	4 cut(s)	184, 333, 343, 352
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	4 cut(s)	181, 283, 349, 448
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	4, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	2 cut(s)	350, 372
HpySE526I	ACGT	1 cut(s)	124
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	1 cut(s)	381
KasI	GGCGCC	1 cut(s)	380
Kzo9I	GATC	3 cut(s)	6, 87, 270
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	114
MabI	ACCWGGT	1 cut(s)	204
MaeI	CTAG	2 cut(s)	44, 167
MaeII	ACGT	1 cut(s)	124
MalI	GATC	3 cut(s)	8, 89, 272
MboI	GATC	3 cut(s)	6, 87, 270
MboII	GAAGA	8 cut(s)	43, 48, 124, 256, 259, 280, 295, 298
MflI	RGATCY	2 cut(s)	6, 87
MhlI	GDGCHC	1 cut(s)	365
MlsI	TGGCCA	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	398
Mly113I	GGCGCC	1 cut(s)	381
MlyI	GAGTC	2 cut(s)	62, 190
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	6 cut(s)	40, 94, 145, 317, 339, 446
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	398
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	2 cut(s)	206, 385
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	208
NarI	GGCGCC	1 cut(s)	381
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	3 cut(s)	6, 87, 270
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	2 cut(s)	229, 382
OliI	CACNNNNGTG	1 cut(s)	420
PaeR7I	CTCGAG	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	191, 329
PkrI	GCNGC	4 cut(s)	147, 380, 434, 464
PleI	GAGTC	2 cut(s)	61, 190
PluTI	GGCGCC	1 cut(s)	384
PpsI	GAGTC	2 cut(s)	61, 190
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	229, 382
PspPI	GGNCC	1 cut(s)	340
PspXI	VCTCGAGB	1 cut(s)	149
PsuI	RGATCY	2 cut(s)	6, 87
RseI	CAYNNNNRTG	1 cut(s)	420
SalI	GTCGAC	1 cut(s)	323
SatI	GCNGC	4 cut(s)	146, 379, 433, 463
Sau3AI	GATC	3 cut(s)	6, 87, 270
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	2 cut(s)	62, 190
ScrFI	CCNGG	2 cut(s)	206, 385
SduI	GDGCHC	1 cut(s)	365
SexAI	ACCWGGT	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	114
SfoI	GGCGCC	1 cut(s)	382
Sfr274I	CTCGAG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	340
SlaI	CTCGAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SsiI	CCGC	3 cut(s)	378, 432, 462
SspDI	GGCGCC	1 cut(s)	380
SspMI	CTAG	2 cut(s)	44, 167
StyD4I	CCNGG	2 cut(s)	204, 383
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	5 cut(s)	69, 150, 194, 324, 408
TauI	GCSGC	3 cut(s)	381, 435, 465
TfiI	GAWTC	2 cut(s)	191, 329
TseI	GCWGC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	382
TspGWI	ACGGA	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	2 cut(s)	44, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.