Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004355

Physical Location & Seq

Genomic Coordinates Forward (+)

23037018 .. 23038009

Gene Structure 992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTTGAATCATCCGACACCATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGATTGATTTTCGCCGGGAAACAGCTTGAAGACGGCCGTACCCTCGCCGACTACAACATCCAGAAGGAATCGACGCTTCATCTCGTCCTCCGTCTCCGTGGTGGTGCTAAGAAGAGGAAGAAGAAGACTTACACCAAGCCGAAGAAGATCAAGCACAAGCATAAGAAGGTTAAGCTCGCTGTTCTTCAGTTTTACAAAATCGATGGATCTGGAAAGGTTCAGCGTTTGAGGAAGGAGTGCCCTAACGCAACCTGTGGAGCTGGGACTTTCATGGCGAGTCATTTTGATCGCCATTACTGTGGTAAGTGTGGACTCACCTACGTTTACCAGAAAGAAGGAGTTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0012505 GO:0015935 GO:0016020 GO:0019538 GO:0019941 GO:0022626 GO:0022627 GO:0030054 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27 ubiquitin

Protein Analysis

157

Amino Acids

17.8

Weight (kDa)

9.83

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	1.5e-17	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.9e-32	Ubiquitin family
Ribosomal_S27	PF01599	102 - 147	1.9e-25	Ribosomal protein S27a

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23410 AT2G47110 AT2G47110 AT3G62250
fragaria_vesca	FvH4_1g25981 FvH4_4g32881 FvH4_4g32881
malus_domestica	MD09G1293300.v1.1 MD13G1094800.v1.1 MD16G1095800.v1.1 MD17G1280900.v1.1
prunus_persica	Prupe.1G250600_v2.0.a1 Prupe.3G004600_v2.0.a1
pyrus_communis	pycom13g08260 pycom16g08190
rosa_chinensis	RchiOBHm_Chr3g0485301 RchiOBHm_Chr3g0485331 RchiOBHm_Chr3g0485341 RchiOBHm_Chr4g0441921
rosa_roxburghii	Rroxscaffold_6G00396770 Rroxscaffold_6G00397010
rosa_samantha	Rh3AG267000 Rh3AG267200 Rh3AG267300 Rh3CG301100 Rh4AG388700 Rh4CG417500
rosa_wichuraiana	Rw3G023720 Rw3G023790 Rw3G023830 Rw3G023890 Rw4G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	82, 337
AcoI	YGGCCR	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	2 cut(s)	27, 97
AgsI	TTSAA	3 cut(s)	53, 152, 467
AluBI	AGCT	4 cut(s)	148, 298, 383, 470
AluI	AGCT	4 cut(s)	148, 298, 383, 470
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	82, 337
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	365
BaeI	ACNNNNGTAYC	2 cut(s)	145, 178
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbsI	GAAGAC	3 cut(s)	38, 159, 254
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	2 cut(s)	74, 320
BceAI	ACGGC	2 cut(s)	144, 172
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	221
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	139
BpiI	GAAGAC	3 cut(s)	38, 159, 254
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	139
Bsa29I	ATCGAT	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 97
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	56, 180
BseLI	CCNNNNNNNGG	2 cut(s)	27, 97
BseSI	GKGCMC	1 cut(s)	365
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	133
BseYI	CCCAGC	1 cut(s)	383
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	159
BshVI	ATCGAT	1 cut(s)	324
BsiEI	CGRYCG	1 cut(s)	160
BsiSI	CCGG	2 cut(s)	113, 138
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	27, 97
BsmAI	GTCTC	1 cut(s)	221
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	5 cut(s)	6, 87, 270, 329, 409
BspANI	GGCC	1 cut(s)	159
BspDI	ATCGAT	1 cut(s)	324
BspPI	GGATC	2 cut(s)	82, 337
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	5 cut(s)	6, 87, 270, 329, 409
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	56, 180
BstKTI	GATC	5 cut(s)	9, 90, 273, 332, 412
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	5 cut(s)	6, 87, 270, 329, 409
BstMCI	CGRYCG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	3 cut(s)	38, 159, 254
BstX2I	RGATCY	3 cut(s)	6, 87, 329
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	3 cut(s)	6, 87, 329
BstZI	CGGCCG	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	159
BsuTUI	ATCGAT	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	56, 180
Cac8I	GCNNGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	115
ClaI	ATCGAT	1 cut(s)	324
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	6 cut(s)	148, 159, 262, 298, 383, 470
CviKI_1	RGCY	6 cut(s)	148, 159, 262, 298, 383, 470
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	5 cut(s)	8, 89, 272, 331, 411
DpnII	GATC	5 cut(s)	6, 87, 270, 329, 409
EaeI	YGGCCR	1 cut(s)	157
EagI	CGGCCG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
EclXI	CGGCCG	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	115
Eco52I	CGGCCG	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	293
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	1 cut(s)	397
FaiI	YATR	3 cut(s)	38, 285, 395
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	1 cut(s)	393
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	2 cut(s)	43, 167
Fsp4HI	GCNGC	1 cut(s)	122
GluI	GCNGC	1 cut(s)	122
GsaI	CCCAGC	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	2 cut(s)	113, 138
HgaI	GACGC	1 cut(s)	205
Hin1II	CATG	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	5 cut(s)	53, 105, 191, 400, 435
HpaII	CCGG	2 cut(s)	113, 138
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	2 cut(s)	434, 448
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	3 cut(s)	13, 184, 333
Hpy8I	GTNNAC	2 cut(s)	434, 448
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	6 cut(s)	73, 95, 181, 283, 349, 452
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	1 cut(s)	397
Kzo9I	GATC	5 cut(s)	6, 87, 270, 329, 409
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	8 cut(s)	126, 131, 151, 197, 318, 369, 388, 464
Lsp1109I	GCAGC	1 cut(s)	133
MaeII	ACGT	1 cut(s)	444
MalI	GATC	5 cut(s)	8, 89, 272, 331, 411
MboI	GATC	5 cut(s)	6, 87, 270, 329, 409
MflI	RGATCY	3 cut(s)	6, 87, 329
MhlI	GDGCHC	1 cut(s)	365
MlyI	GAGTC	2 cut(s)	409, 429
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	5 cut(s)	40, 176, 221, 231, 345
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	420
MspI	CCGG	2 cut(s)	113, 138
MspR9I	CCNGG	1 cut(s)	139
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	5 cut(s)	6, 87, 270, 329, 409
NlaIII	CATG	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	53, 105, 191
PkrI	GCNGC	1 cut(s)	123
PleI	GAGTC	2 cut(s)	408, 429
PpsI	GAGTC	2 cut(s)	408, 429
PspFI	CCCAGC	1 cut(s)	383
PspPI	GGNCC	1 cut(s)	115
PsuI	RGATCY	3 cut(s)	6, 87, 329
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	5 cut(s)	6, 87, 270, 329, 409
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	409, 429
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	365
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	3 cut(s)	69, 194, 324
TfiI	GAWTC	3 cut(s)	53, 105, 191
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseI	GCWGC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	191, 382
TspGWI	ACGGA	2 cut(s)	203, 209
VpaK11BI	GGWCC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.