Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004355

Physical Location & Seq

Genomic Coordinates Forward (+)

5479133 .. 5479768

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCGTCGTTTCTTATGCGACCACATCAACTCTCATGCGCCTCTACCGTGCAGATACTATATAAACCTGATCCCTTCCATTTTCCCACTCCCAAATCTCCCACCGTCTGCGGCCGCAACCATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTAGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACGCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTCCGCGGTGGCGCCAAGAAGAGGAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCATAAGCACAAGAAGGTGAAGCTTGCAGTGCTCCAGTTCTACAAGGTGGATGACTCCGGCAAGGTCCAGAGGCTGCGGAAGGAGTGCCCCAATGCCGAGTGCGGCGCCGGGACTTTCATGGCGAACCACTTCGACAGGCACTACTGCGGCAAGTGCGGGTTGACCTATGTTTACCAAAAGGCTGGCGGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27 ubiquitin

Protein Analysis

197

Amino Acids

22.21

Weight (kDa)

9.75

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	41 - 111	2.5e-17	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	43 - 114	3.1e-32	Ubiquitin family
Ribosomal_S27	PF01599	142 - 187	5.4e-26	Ribosomal protein S27a

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23410 AT2G47110 AT2G47110 AT3G62250
fragaria_vesca	FvH4_1g25981 FvH4_4g32881 FvH4_4g32881
malus_domestica	MD09G1293300.v1.1 MD13G1094800.v1.1 MD16G1095800.v1.1 MD17G1280900.v1.1
prunus_persica	Prupe.1G250600_v2.0.a1 Prupe.3G004600_v2.0.a1
pyrus_communis	pycom13g08260 pycom16g08190
rosa_chinensis	RchiOBHm_Chr3g0485301 RchiOBHm_Chr3g0485331 RchiOBHm_Chr3g0485341 RchiOBHm_Chr4g0441921
rosa_roxburghii	Rroxscaffold_6G00396770 Rroxscaffold_6G00397010
rosa_samantha	Rh3AG267000 Rh3AG267200 Rh3AG267300 Rh3CG301100 Rh4AG388700 Rh4CG417500
rosa_wichuraiana	Rw3G023720 Rw3G023790 Rw3G023830 Rw3G023890 Rw4G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	347, 500
AccII	CGCG	1 cut(s)	342
AclWI	GGATC	2 cut(s)	64, 202
AcoI	YGGCCR	2 cut(s)	111, 277
AcyI	GRCGYC	2 cut(s)	348, 501
AdeI	CACNNNGTG	1 cut(s)	328
AfiI	CCNNNNNNNGG	3 cut(s)	217, 325, 357
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	2 cut(s)	268, 418
AluI	AGCT	2 cut(s)	268, 418
Alw21I	GWGCWC	2 cut(s)	333, 429
AlwI	GGATC	2 cut(s)	64, 202
AlwNI	CAGNNNCTG	1 cut(s)	469
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	3 cut(s)	111, 201, 277
ApeKI	GCWGC	3 cut(s)	241, 265, 469
Asp700I	GAANNNNTTC	1 cut(s)	524
AspLEI	GCGC	4 cut(s)	40, 246, 350, 503
AspS9I	GGNCC	2 cut(s)	235, 460
AsuC2I	CCSGG	2 cut(s)	233, 505
AsuHPI	GGTGA	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	235, 460
BaeGI	GKGCMC	1 cut(s)	485
BanI	GGYRCC	2 cut(s)	347, 500
BarI	GAAGNNNNNNTAC	2 cut(s)	356, 388
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	2 cut(s)	333, 429
BbvI	GCAGC	3 cut(s)	253, 277, 456
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	2 cut(s)	233, 505
BfaI	CTAG	1 cut(s)	164
BfoI	RGCGCY	3 cut(s)	247, 351, 504
BglII	AGATCT	1 cut(s)	126
BisI	GCNGC	7 cut(s)	111, 114, 242, 266, 470, 499, 544
BlsI	GCNGC	7 cut(s)	112, 115, 243, 267, 471, 500, 545
Bme1390I	CCNGG	3 cut(s)	233, 326, 505
Bme18I	GGWCC	2 cut(s)	235, 460
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	235, 460
BmiI	GGNNCC	2 cut(s)	349, 502
BmrFI	CCNGG	3 cut(s)	233, 326, 505
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	413
BpuMI	CCSGG	2 cut(s)	233, 505
BsaHI	GRCGYC	2 cut(s)	348, 501
BsaJI	CCNNGG	2 cut(s)	231, 340
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 325, 357
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	2 cut(s)	231, 340
BseGI	GGATG	3 cut(s)	225, 300, 451
BseLI	CCNNNNNNNGG	3 cut(s)	217, 325, 357
BseNI	ACTGG	1 cut(s)	430
BseSI	GKGCMC	1 cut(s)	485
BseX3I	CGGCCG	2 cut(s)	111, 277
BseXI	GCAGC	3 cut(s)	253, 277, 456
BsgI	GTGCAG	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	342
Bsh1285I	CGRYCG	2 cut(s)	114, 280
BshFI	GGCC	3 cut(s)	113, 203, 279
BshNI	GGYRCC	2 cut(s)	347, 500
BsiEI	CGRYCG	2 cut(s)	114, 280
BsiHKAI	GWGCWC	2 cut(s)	333, 429
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	4 cut(s)	233, 258, 453, 504
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	3 cut(s)	217, 325, 357
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	3 cut(s)	113, 203, 279
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	3 cut(s)	333, 429, 485
Bsp143I	GATC	4 cut(s)	69, 126, 207, 390
BspANI	GGCC	3 cut(s)	113, 203, 279
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	349, 502
BspPI	GGATC	2 cut(s)	64, 202
BspT107I	GGYRCC	2 cut(s)	347, 500
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	430
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	231, 340
BssMI	GATC	4 cut(s)	69, 126, 207, 390
BssNI	GRCGYC	2 cut(s)	348, 501
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	48, 105
Bst6I	CTCTTC	1 cut(s)	350
BstACI	GRCGYC	2 cut(s)	348, 501
BstC8I	GCNNGC	5 cut(s)	259, 263, 288, 420, 580
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	3 cut(s)	225, 300, 451
BstFNI	CGCG	1 cut(s)	342
BstH2I	RGCGCY	3 cut(s)	247, 351, 504
BstHHI	GCGC	4 cut(s)	40, 246, 350, 503
BstKTI	GATC	4 cut(s)	72, 129, 210, 393
BstMBI	GATC	4 cut(s)	69, 126, 207, 390
BstMCI	CGRYCG	2 cut(s)	114, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	424, 549
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	3 cut(s)	231, 324, 503
BstSLI	GKGCMC	1 cut(s)	485
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	253, 277, 456
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	2 cut(s)	126, 207
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstYI	RGATCY	2 cut(s)	126, 207
BstZI	CGGCCG	2 cut(s)	111, 277
BsuRI	GGCC	3 cut(s)	113, 203, 279
BtgI	CCRYGG	1 cut(s)	340
BtsCI	GGATG	3 cut(s)	225, 300, 451
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	5 cut(s)	259, 263, 288, 420, 580
CaiI	CAGNNNCTG	1 cut(s)	469
CciNI	GCGGCCGC	1 cut(s)	111
CfoI	GCGC	4 cut(s)	40, 246, 350, 503
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	235, 460
Cfr42I	CCGCGG	1 cut(s)	343
CsiI	ACCWGGT	1 cut(s)	324
CviAII	CATG	3 cut(s)	35, 121, 514
CviJI	RGCY	8 cut(s)	113, 203, 268, 279, 382, 418, 469, 578
CviKI_1	RGCY	8 cut(s)	113, 203, 268, 279, 382, 418, 469, 578
DinI	GGCGCC	2 cut(s)	349, 502
DpnI	GATC	4 cut(s)	71, 128, 209, 392
DpnII	GATC	4 cut(s)	69, 126, 207, 390
DraIII	CACNNNGTG	1 cut(s)	328
EaeI	YGGCCR	2 cut(s)	111, 277
EagI	CGGCCG	2 cut(s)	111, 277
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
EciI	GGCGGA	1 cut(s)	323
EclXI	CGGCCG	2 cut(s)	111, 277
Eco47I	GGWCC	2 cut(s)	235, 460
Eco52I	CGGCCG	2 cut(s)	111, 277
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	324
EgeI	GGCGCC	2 cut(s)	349, 502
EheI	GGCGCC	2 cut(s)	349, 502
FaeI	CATG	3 cut(s)	38, 124, 517
FaiI	YATR	9 cut(s)	16, 36, 60, 62, 122, 158, 399, 515, 564
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	3 cut(s)	34, 120, 513
FauI	CCCGC	1 cut(s)	545
Fnu4HI	GCNGC	7 cut(s)	111, 114, 242, 266, 470, 499, 544
FokI	GGATG	3 cut(s)	212, 287, 458
Fsp4HI	GCNGC	7 cut(s)	111, 114, 242, 266, 470, 499, 544
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	4 cut(s)	39, 245, 349, 502
GluI	GCNGC	7 cut(s)	111, 114, 242, 266, 470, 499, 544
GsuI	CTGGAG	1 cut(s)	413
HaeII	RGCGCY	3 cut(s)	247, 351, 504
HaeIII	GGCC	3 cut(s)	113, 203, 279
HapII	CCGG	4 cut(s)	233, 258, 453, 504
HhaI	GCGC	4 cut(s)	40, 246, 350, 503
Hin1I	GRCGYC	2 cut(s)	348, 501
Hin1II	CATG	3 cut(s)	38, 124, 517
Hin6I	GCGC	4 cut(s)	38, 244, 348, 501
HinP1I	GCGC	4 cut(s)	38, 244, 348, 501
HincII	GTYRAC	1 cut(s)	558
HindII	GTYRAC	1 cut(s)	558
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	3 cut(s)	173, 311, 449
HpaII	CCGG	4 cut(s)	233, 258, 453, 504
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	3 cut(s)	315, 558, 568
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	3 cut(s)	133, 304, 463
Hpy8I	GTNNAC	3 cut(s)	315, 558, 568
Hpy99I	CGWCG	1 cut(s)	9
HpyAV	CCTTC	4 cut(s)	84, 301, 403, 469
HpyCH4III	ACNGT	2 cut(s)	48, 105
HpyCH4V	TGCA	3 cut(s)	51, 124, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	424, 549
Hsp92I	GRCGYC	2 cut(s)	348, 501
Hsp92II	CATG	3 cut(s)	38, 124, 517
HspAI	GCGC	4 cut(s)	38, 244, 348, 501
KasI	GGCGCC	2 cut(s)	347, 500
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
KspI	CCGCGG	1 cut(s)	343
Kzo9I	GATC	4 cut(s)	69, 126, 207, 390
LmnI	GCTCC	2 cut(s)	336, 432
Lsp1109I	GCAGC	3 cut(s)	253, 277, 456
LweI	GCATC	1 cut(s)	234
MabI	ACCWGGT	1 cut(s)	324
MaeI	CTAG	1 cut(s)	164
MalI	GATC	4 cut(s)	71, 128, 209, 392
MboI	GATC	4 cut(s)	69, 126, 207, 390
MboII	GAAGA	7 cut(s)	121, 244, 367, 373, 376, 379, 400
MflI	RGATCY	2 cut(s)	126, 207
MhlI	GDGCHC	3 cut(s)	333, 429, 485
Mly113I	GGCGCC	2 cut(s)	348, 501
MlyI	GAGTC	3 cut(s)	182, 320, 443
MmeI	TCCRAC	1 cut(s)	204
MroNI	GCCGGC	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	4 cut(s)	233, 258, 453, 504
MspR9I	CCNGG	3 cut(s)	233, 326, 505
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	424, 549
NaeI	GCCGGC	1 cut(s)	259
NarI	GGCGCC	2 cut(s)	348, 501
NciI	CCSGG	2 cut(s)	233, 505
NdeII	GATC	4 cut(s)	69, 126, 207, 390
NgoMIV	GCCGGC	1 cut(s)	257
NlaIII	CATG	3 cut(s)	38, 124, 517
NlaIV	GGNNCC	2 cut(s)	349, 502
NmeAIII	GCCGAG	1 cut(s)	517
NotI	GCGGCCGC	1 cut(s)	111
PaeR7I	CTCGAG	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	524
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	7 cut(s)	112, 115, 243, 267, 471, 500, 545
PleI	GAGTC	3 cut(s)	181, 319, 443
PluTI	GGCGCC	2 cut(s)	351, 504
PpsI	GAGTC	3 cut(s)	181, 319, 443
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	2 cut(s)	349, 502
PspPI	GGNCC	2 cut(s)	235, 460
PspXI	VCTCGAGB	1 cut(s)	269
PstNI	CAGNNNCTG	1 cut(s)	469
PsuI	RGATCY	2 cut(s)	126, 207
PsyI	GACNNNGTC	1 cut(s)	194
SacII	CCGCGG	1 cut(s)	343
SatI	GCNGC	7 cut(s)	111, 114, 242, 266, 470, 499, 544
Sau3AI	GATC	4 cut(s)	69, 126, 207, 390
Sau96I	GGNCC	2 cut(s)	235, 460
SchI	GAGTC	3 cut(s)	182, 320, 443
ScrFI	CCNGG	3 cut(s)	233, 326, 505
SduI	GDGCHC	3 cut(s)	333, 429, 485
SexAI	ACCWGGT	1 cut(s)	324
SfaNI	GCATC	1 cut(s)	234
SfoI	GGCGCC	2 cut(s)	349, 502
Sfr274I	CTCGAG	1 cut(s)	269
Sfr303I	CCGCGG	1 cut(s)	343
SgrBI	CCGCGG	1 cut(s)	343
SinI	GGWCC	2 cut(s)	235, 460
SlaI	CTCGAG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SspDI	GGCGCC	2 cut(s)	347, 500
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	3 cut(s)	231, 324, 503
TaaI	ACNGT	2 cut(s)	48, 105
TaqI	TCGA	4 cut(s)	171, 189, 270, 528
TauI	GCSGC	4 cut(s)	113, 116, 501, 546
TscAI	CASTG	1 cut(s)	429
TseI	GCWGC	3 cut(s)	241, 265, 469
TspDTI	ATGAA	1 cut(s)	502
TspRI	CASTG	1 cut(s)	429
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	235, 460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XhoI	CTCGAG	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.