Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004355

Physical Location & Seq

Genomic Coordinates Reverse (-)

30254044 .. 30256145

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG267200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCAGATCTTCGTGAAAACCCTAACGAGGAAGACGATCACCCTGGAGGTGGAGTCGTCAGACACTATTGACAACATGAAGGCCAAGATTCAAGACAAGGAGGGCATCCTGCCAGACCAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGAACCCTAGCTAACTACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTTCATCTCCGTGGCAGAGCCAGGAAGCGTAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTCAAGCTCGCCGTTCTCCAGTTCTACAAGGTCGACGACTCCGGCAAGGTGCAGAAGCTCAGGAAGGAGTGCCCCAATGCCTACTTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27 ubiquitin

Protein Analysis

127

Amino Acids

14.79

Weight (kDa)

10.16

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	3.4e-15	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	4.7e-29	Ubiquitin family
Ribosomal_S27	PF01599	102 - 123	1.4e-07	Ribosomal protein S27a

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23410 AT2G47110 AT2G47110 AT3G62250
fragaria_vesca	FvH4_1g25981 FvH4_4g32881 FvH4_4g32881
malus_domestica	MD09G1293300.v1.1 MD13G1094800.v1.1 MD16G1095800.v1.1 MD17G1280900.v1.1
prunus_persica	Prupe.1G250600_v2.0.a1 Prupe.3G004600_v2.0.a1
pyrus_communis	pycom13g08260 pycom16g08190
rosa_chinensis	RchiOBHm_Chr3g0485301 RchiOBHm_Chr3g0485331 RchiOBHm_Chr3g0485341 RchiOBHm_Chr4g0441921
rosa_roxburghii	Rroxscaffold_6G00396770 Rroxscaffold_6G00397010
rosa_samantha	Rh3AG267000 Rh3AG267200 Rh3AG267300 Rh3CG301100 Rh4AG388700 Rh4CG417500
rosa_wichuraiana	Rw3G023720 Rw3G023790 Rw3G023830 Rw3G023890 Rw4G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	324
AcoI	YGGCCR	1 cut(s)	157
AdeI	CACNNNGTG	1 cut(s)	208
AfiI	CCNNNNNNNGG	3 cut(s)	27, 49, 378
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	3 cut(s)	42, 204, 230
AluBI	AGCT	4 cut(s)	148, 170, 298, 349
AluI	AGCT	4 cut(s)	148, 170, 298, 349
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	2 cut(s)	81, 157
ApeKI	GCWGC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	365
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbsI	GAAGAC	2 cut(s)	38, 254
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	287
BciT130I	CCWGG	3 cut(s)	44, 206, 232
BfaI	CTAG	1 cut(s)	167
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
Bme1390I	CCNGG	3 cut(s)	44, 206, 232
BmeT110I	CYCGRG	1 cut(s)	149
BmrFI	CCNGG	3 cut(s)	44, 206, 232
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	38, 254
BpmI	CTGGAG	2 cut(s)	65, 293
Bpu10I	CCTNAGC	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	42, 220
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 49, 378
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	3 cut(s)	44, 206, 232
BseDI	CCNNGG	2 cut(s)	42, 220
BseGI	GGATG	3 cut(s)	105, 160, 180
BseLI	CCNNNNNNNGG	3 cut(s)	27, 49, 378
BseMII	CTCAG	1 cut(s)	364
BseNI	ACTGG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	362
BshFI	GGCC	2 cut(s)	83, 159
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	138, 333
BslI	CCNNNNNNNGG	3 cut(s)	27, 49, 378
BsnI	GGCC	2 cut(s)	83, 159
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	3 cut(s)	6, 36, 270
BspANI	GGCC	2 cut(s)	83, 159
BspCNI	CTCAG	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	42, 220
BssMI	GATC	3 cut(s)	6, 36, 270
Bst2UI	CCWGG	3 cut(s)	44, 206, 232
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	350
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	3 cut(s)	105, 160, 180
BstKTI	GATC	3 cut(s)	9, 39, 273
BstMBI	GATC	3 cut(s)	6, 36, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	3 cut(s)	44, 206, 232
BstSCI	CCNGG	3 cut(s)	42, 204, 230
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	2 cut(s)	38, 254
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	83, 159
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	105, 160, 180
Cac8I	GCNNGC	1 cut(s)	300
CsiI	ACCWGGT	1 cut(s)	204
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	9 cut(s)	83, 127, 148, 159, 170, 230, 262, 298, 349
CviKI_1	RGCY	9 cut(s)	83, 127, 148, 159, 170, 230, 262, 298, 349
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	3 cut(s)	8, 38, 272
DpnII	GATC	3 cut(s)	6, 36, 270
DraIII	CACNNNGTG	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	149
EcoRII	CCWGG	3 cut(s)	42, 204, 230
FaeI	CATG	1 cut(s)	79
FaiI	YATR	1 cut(s)	77
FatI	CATG	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	146
FokI	GGATG	3 cut(s)	92, 167, 167
Fsp4HI	GCNGC	1 cut(s)	146
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	1 cut(s)	146
GsuI	CTGGAG	2 cut(s)	65, 293
HaeIII	GGCC	2 cut(s)	83, 159
HapII	CCGG	2 cut(s)	138, 333
Hin1II	CATG	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	4 cut(s)	53, 88, 191, 329
HpaII	CCGG	2 cut(s)	138, 333
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	195, 325
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	4 cut(s)	13, 92, 184, 352
Hpy8I	GTNNAC	2 cut(s)	195, 325
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	4 cut(s)	73, 181, 283, 349
HpyCH4V	TGCA	2 cut(s)	4, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	350
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	6, 36, 270
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	114
MabI	ACCWGGT	1 cut(s)	204
MaeI	CTAG	1 cut(s)	167
MalI	GATC	3 cut(s)	8, 38, 272
MboI	GATC	3 cut(s)	6, 36, 270
MboII	GAAGA	5 cut(s)	43, 124, 256, 259, 280
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	365
MlyI	GAGTC	3 cut(s)	62, 200, 323
MnlI	CCTC	5 cut(s)	21, 40, 94, 117, 145
MslI	CAYNNNNRTG	1 cut(s)	219
MspI	CCGG	2 cut(s)	138, 333
MspR9I	CCNGG	3 cut(s)	44, 206, 232
MvaI	CCWGG	3 cut(s)	44, 206, 232
MwoI	GCNNNNNNNGC	1 cut(s)	118
NdeII	GATC	3 cut(s)	6, 36, 270
NlaIII	CATG	1 cut(s)	79
PaeR7I	CTCGAG	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	147
PleI	GAGTC	3 cut(s)	61, 199, 323
PpsI	GAGTC	3 cut(s)	61, 199, 323
Psp6I	CCWGG	3 cut(s)	42, 204, 230
PspGI	CCWGG	3 cut(s)	42, 204, 230
PspXI	VCTCGAGB	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	219
SalI	GTCGAC	1 cut(s)	323
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	3 cut(s)	6, 36, 270
SchI	GAGTC	3 cut(s)	62, 200, 323
ScrFI	CCNGG	3 cut(s)	44, 206, 232
SduI	GDGCHC	1 cut(s)	365
SexAI	ACCWGGT	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	3 cut(s)	42, 204, 230
TaqI	TCGA	2 cut(s)	150, 324
TfiI	GAWTC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	92, 203
TspGWI	ACGGA	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	2 cut(s)	202, 373
XhoI	CTCGAG	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.