Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004355

Physical Location & Seq

Genomic Coordinates Reverse (-)

17897053 .. 17897523

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g25981.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACGTTGGAGGTGGAGTCCTCCGACACCATCGATAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCCGGACTCTCGCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTCCGCCTCCGCGGTGGCGCCAAGAAGCGCAAGAAGAAGACGTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTCAAGCTCGCCGTGCTCCAGTTCTACAAGGTTGATGACTCCGGGAAGGTCCAGAAGCTCAGGAAGGAGTGCCCTAACGCCGAGTGCGGCGCCGGGACTTTCATGGCTAACCATTTTGACAGGCACTATTGCGGTAAGTGTGGTCTCACCTATGTTTACCAGAAGGCTGGTGGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27 ubiquitin

Protein Analysis

157

Amino Acids

17.68

Weight (kDa)

9.75

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	1.5e-17	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.9e-32	Ubiquitin family
Ribosomal_S27	PF01599	102 - 147	1.4e-25	Ribosomal protein S27a

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23410 AT2G47110 AT2G47110 AT3G62250
fragaria_vesca	FvH4_1g25981 FvH4_4g32881 FvH4_4g32881
malus_domestica	MD09G1293300.v1.1 MD13G1094800.v1.1 MD16G1095800.v1.1 MD17G1280900.v1.1
prunus_persica	Prupe.1G250600_v2.0.a1 Prupe.3G004600_v2.0.a1
pyrus_communis	pycom13g08260 pycom16g08190
rosa_chinensis	RchiOBHm_Chr3g0485301 RchiOBHm_Chr3g0485331 RchiOBHm_Chr3g0485341 RchiOBHm_Chr4g0441921
rosa_roxburghii	Rroxscaffold_6G00396770 Rroxscaffold_6G00397010
rosa_samantha	Rh3AG267000 Rh3AG267200 Rh3AG267300 Rh3CG301100 Rh4AG388700 Rh4CG417500
rosa_wichuraiana	Rw3G023720 Rw3G023790 Rw3G023830 Rw3G023890 Rw4G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	227, 380
AccI	GTMKAC	1 cut(s)	194
AccII	CGCG	1 cut(s)	222
AciI	CCGC	6 cut(s)	110, 214, 220, 222, 378, 423
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	157
AcyI	GRCGYC	2 cut(s)	228, 381
AdeI	CACNNNGTG	1 cut(s)	208
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	27, 97
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	3 cut(s)	148, 298, 349
AluI	AGCT	3 cut(s)	148, 298, 349
Alw21I	GWGCWC	2 cut(s)	213, 309
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	2 cut(s)	81, 157
ApeKI	GCWGC	1 cut(s)	121
AspLEI	GCGC	4 cut(s)	126, 230, 240, 383
AspS9I	GGNCC	2 cut(s)	115, 340
AsuC2I	CCSGG	2 cut(s)	334, 385
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	2 cut(s)	115, 340
BaeGI	GKGCMC	1 cut(s)	365
BanI	GGYRCC	2 cut(s)	227, 380
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbsI	GAAGAC	2 cut(s)	38, 254
Bbv12I	GWGCWC	2 cut(s)	213, 309
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	2 cut(s)	172, 287
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	2 cut(s)	334, 385
BcoDI	GTCTC	1 cut(s)	440
BfoI	RGCGCY	3 cut(s)	127, 231, 384
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	122, 379
BlsI	GCNGC	2 cut(s)	123, 380
Bme1390I	CCNGG	3 cut(s)	206, 334, 385
Bme18I	GGWCC	2 cut(s)	115, 340
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	115, 340
BmiI	GGNNCC	2 cut(s)	229, 382
BmrFI	CCNGG	3 cut(s)	206, 334, 385
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	38, 254
BpmI	CTGGAG	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	350
BpuMI	CCSGG	2 cut(s)	334, 385
Bsa29I	ATCGAT	1 cut(s)	69
BsaHI	GRCGYC	2 cut(s)	228, 381
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 97
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	206
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	105, 180
BseLI	CCNNNNNNNGG	2 cut(s)	27, 97
BseMII	CTCAG	1 cut(s)	364
BseNI	ACTGG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	365
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	83, 159
BshNI	GGYRCC	2 cut(s)	227, 380
BshVI	ATCGAT	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	2 cut(s)	213, 309
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	5 cut(s)	113, 138, 160, 333, 384
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	27, 97
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	83, 159
Bso31I	GGTCTC	1 cut(s)	440
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	3 cut(s)	213, 309, 365
Bsp143I	GATC	4 cut(s)	6, 36, 87, 270
BspACI	CCGC	6 cut(s)	110, 214, 220, 222, 378, 423
BspANI	GGCC	2 cut(s)	83, 159
BspCNI	CTCAG	1 cut(s)	363
BspDI	ATCGAT	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	229, 382
BspPI	GGATC	1 cut(s)	82
BspT107I	GGYRCC	2 cut(s)	227, 380
BspTNI	GGTCTC	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	4 cut(s)	6, 36, 87, 270
BssNI	GRCGYC	2 cut(s)	228, 381
Bst2UI	CCWGG	1 cut(s)	206
BstACI	GRCGYC	2 cut(s)	228, 381
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	350
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	105, 180
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	3 cut(s)	127, 231, 384
BstHHI	GCGC	4 cut(s)	126, 230, 240, 383
BstKTI	GATC	4 cut(s)	9, 39, 90, 273
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	4 cut(s)	6, 36, 87, 270
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 304
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	3 cut(s)	204, 332, 383
BstSLI	GKGCMC	1 cut(s)	365
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	2 cut(s)	38, 254
BstX2I	RGATCY	2 cut(s)	6, 87
BstXI	CCANNNNNNTGG	1 cut(s)	458
BstYI	RGATCY	2 cut(s)	6, 87
BstZI	CGGCCG	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	83, 159
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	105, 180
Cac8I	GCNNGC	1 cut(s)	300
CfoI	GCGC	4 cut(s)	126, 230, 240, 383
Cfr13I	GGNCC	2 cut(s)	115, 340
Cfr42I	CCGCGG	1 cut(s)	223
ClaI	ATCGAT	1 cut(s)	69
CsiI	ACCWGGT	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	8 cut(s)	83, 148, 159, 262, 298, 349, 398, 458
CviKI_1	RGCY	8 cut(s)	83, 148, 159, 262, 298, 349, 398, 458
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	350
DinI	GGCGCC	2 cut(s)	229, 382
DpnI	GATC	4 cut(s)	8, 38, 89, 272
DpnII	GATC	4 cut(s)	6, 36, 87, 270
DraIII	CACNNNGTG	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	157
EagI	CGGCCG	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	203
EclXI	CGGCCG	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	2 cut(s)	115, 340
Eco52I	CGGCCG	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	204
EgeI	GGCGCC	2 cut(s)	229, 382
EheI	GGCGCC	2 cut(s)	229, 382
FaeI	CATG	1 cut(s)	397
FaiI	YATR	2 cut(s)	395, 444
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	1 cut(s)	393
FauI	CCCGC	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	2 cut(s)	122, 379
FokI	GGATG	2 cut(s)	92, 167
Fsp4HI	GCNGC	2 cut(s)	122, 379
GlaI	GCGC	4 cut(s)	125, 229, 239, 382
GluI	GCNGC	2 cut(s)	122, 379
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	3 cut(s)	127, 231, 384
HaeIII	GGCC	2 cut(s)	83, 159
HapII	CCGG	5 cut(s)	113, 138, 160, 333, 384
HhaI	GCGC	4 cut(s)	126, 230, 240, 383
Hin1I	GRCGYC	2 cut(s)	228, 381
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	4 cut(s)	124, 228, 238, 381
HinP1I	GCGC	4 cut(s)	124, 228, 238, 381
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	5 cut(s)	53, 163, 191, 196, 329
HpaII	CCGG	5 cut(s)	113, 138, 160, 333, 384
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	3 cut(s)	195, 255, 448
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	4 cut(s)	13, 184, 343, 352
Hpy8I	GTNNAC	3 cut(s)	195, 255, 448
HpyAV	CCTTC	6 cut(s)	73, 181, 283, 331, 349, 448
HpyCH4IV	ACGT	2 cut(s)	41, 251
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 304
HpyF3I	CTNAG	1 cut(s)	350
HpySE526I	ACGT	2 cut(s)	41, 251
Hsp92I	GRCGYC	2 cut(s)	228, 381
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	4 cut(s)	124, 228, 238, 381
KasI	GGCGCC	2 cut(s)	227, 380
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	6, 36, 87, 270
LmnI	GCTCC	2 cut(s)	216, 312
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	114
MabI	ACCWGGT	1 cut(s)	204
MaeII	ACGT	2 cut(s)	41, 251
MalI	GATC	4 cut(s)	8, 38, 89, 272
MboI	GATC	4 cut(s)	6, 36, 87, 270
MboII	GAAGA	5 cut(s)	43, 124, 256, 259, 280
MflI	RGATCY	2 cut(s)	6, 87
MhlI	GDGCHC	3 cut(s)	213, 309, 365
Mly113I	GGCGCC	2 cut(s)	228, 381
MlyI	GAGTC	5 cut(s)	62, 157, 190, 200, 323
MmeI	TCCRAC	2 cut(s)	24, 84
MnlI	CCTC	6 cut(s)	40, 67, 94, 137, 145, 227
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	5 cut(s)	113, 138, 160, 333, 384
MspR9I	CCNGG	3 cut(s)	206, 334, 385
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	118, 304
NarI	GGCGCC	2 cut(s)	228, 381
NciI	CCSGG	2 cut(s)	334, 385
NdeII	GATC	4 cut(s)	6, 36, 87, 270
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	2 cut(s)	229, 382
NmeAIII	GCCGAG	1 cut(s)	397
PaeR7I	CTCGAG	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfoI	TCCNGGA	1 cut(s)	332
PkrI	GCNGC	2 cut(s)	123, 380
PleI	GAGTC	5 cut(s)	61, 157, 190, 199, 323
PluTI	GGCGCC	2 cut(s)	231, 384
PpsI	GAGTC	5 cut(s)	61, 157, 190, 199, 323
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	229, 382
PspPI	GGNCC	2 cut(s)	115, 340
PspXI	VCTCGAGB	1 cut(s)	149
PsuI	RGATCY	2 cut(s)	6, 87
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SacII	CCGCGG	1 cut(s)	223
SalI	GTCGAC	1 cut(s)	193
SatI	GCNGC	2 cut(s)	122, 379
Sau3AI	GATC	4 cut(s)	6, 36, 87, 270
Sau96I	GGNCC	2 cut(s)	115, 340
SchI	GAGTC	5 cut(s)	62, 157, 190, 200, 323
ScrFI	CCNGG	3 cut(s)	206, 334, 385
SduI	GDGCHC	3 cut(s)	213, 309, 365
SexAI	ACCWGGT	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	114
SfoI	GGCGCC	2 cut(s)	229, 382
Sfr274I	CTCGAG	1 cut(s)	149
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
SinI	GGWCC	2 cut(s)	115, 340
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SsiI	CCGC	6 cut(s)	110, 214, 220, 222, 378, 423
SspDI	GGCGCC	2 cut(s)	227, 380
StyD4I	CCNGG	3 cut(s)	204, 332, 383
TaiI	ACGT	2 cut(s)	44, 254
TaqI	TCGA	3 cut(s)	69, 150, 194
TauI	GCSGC	1 cut(s)	381
TseI	GCWGC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	382
VpaK11BI	GGWCC	2 cut(s)	115, 340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XhoI	CTCGAG	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.