Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004355

Physical Location & Seq

Genomic Coordinates Reverse (-)

30420753 .. 30421223

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTGGAGTCGTCGGACACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGAACCCTAGCCGACTACAACATCCAAAAGGAGTCCACTCTCCACCTGGTGCTTCGTCTCCGCGGCGGAGCCAAGAAGCGTAAGAAGAAGACCTACACCAAGCCAAAGAAGATCAAGCACAAGCACAAGAAGGTCAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGACGACTCCGGCAAGGTGCAGAAGCTAAGGAAGGAGTGCCCGAACGCCGAGTGCGGAGCTGGGACCTTCATGGCTAACCATTTTGACAGACACTACTGTGGTAAGTGTGGTCTCACCTATGTTTACCAGAAGGCCGGCGGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27 ubiquitin

Protein Analysis

156

Amino Acids

17.7

Weight (kDa)

9.75

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	8.4e-18	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	9.7e-33	Ubiquitin family
Ribosomal_S27	PF01599	102 - 147	1.4e-25	Ribosomal protein S27a

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23410 AT2G47110 AT2G47110 AT3G62250
fragaria_vesca	FvH4_1g25981 FvH4_4g32881 FvH4_4g32881
malus_domestica	MD09G1293300.v1.1 MD13G1094800.v1.1 MD16G1095800.v1.1 MD17G1280900.v1.1
prunus_persica	Prupe.1G250600_v2.0.a1 Prupe.3G004600_v2.0.a1
pyrus_communis	pycom13g08260 pycom16g08190
rosa_chinensis	RchiOBHm_Chr3g0485301 RchiOBHm_Chr3g0485331 RchiOBHm_Chr3g0485341 RchiOBHm_Chr4g0441921
rosa_roxburghii	Rroxscaffold_6G00396770 Rroxscaffold_6G00397010
rosa_samantha	Rh3AG267000 Rh3AG267200 Rh3AG267300 Rh3CG301100 Rh4AG388700 Rh4CG417500
rosa_wichuraiana	Rw3G023720 Rw3G023790 Rw3G023830 Rw3G023890 Rw4G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	1 cut(s)	222
AciI	CCGC	5 cut(s)	220, 222, 225, 378, 462
AcoI	YGGCCR	1 cut(s)	157
AdeI	CACNNNGTG	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	27, 49
AgsI	TTSAA	2 cut(s)	71, 92
AjnI	CCWGG	1 cut(s)	204
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	4 cut(s)	148, 298, 349, 383
AluI	AGCT	4 cut(s)	148, 298, 349, 383
Alw26I	GTCTC	2 cut(s)	221, 440
AoxI	GGCC	3 cut(s)	81, 157, 456
ApeKI	GCWGC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	387
AsuHPI	GGTGA	2 cut(s)	31, 430
AvaII	GGWCC	1 cut(s)	387
BaeGI	GKGCMC	1 cut(s)	365
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbsI	GAAGAC	2 cut(s)	38, 254
BbvI	GCAGC	1 cut(s)	157
BceAI	ACGGC	2 cut(s)	172, 287
BciT130I	CCWGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	221, 440
BfaI	CTAG	3 cut(s)	44, 149, 167
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	3 cut(s)	146, 223, 463
BlsI	GCNGC	3 cut(s)	147, 224, 464
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	2 cut(s)	229, 388
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	38, 254
BpmI	CTGGAG	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 49
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	105, 180
BseLI	CCNNNNNNNGG	2 cut(s)	27, 49
BseNI	ACTGG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	365
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	383
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	83, 159, 458
BsiEI	CGRYCG	1 cut(s)	160
BsiSI	CCGG	3 cut(s)	138, 333, 459
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	27, 49
BsmAI	GTCTC	2 cut(s)	221, 440
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	3 cut(s)	83, 159, 458
Bso31I	GGTCTC	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	3 cut(s)	6, 36, 270
BspACI	CCGC	5 cut(s)	220, 222, 225, 378, 462
BspANI	GGCC	3 cut(s)	83, 159, 458
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	229, 388
BspTNI	GGTCTC	1 cut(s)	440
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	6, 36, 270
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	300, 460
BstDEI	CTNAG	1 cut(s)	350
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	105, 180
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	3 cut(s)	9, 39, 273
BstMAI	GTCTC	2 cut(s)	221, 440
BstMBI	GATC	3 cut(s)	6, 36, 270
BstMCI	CGRYCG	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	365
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	2 cut(s)	38, 254
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	83, 159, 458
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	105, 180
Cac8I	GCNNGC	2 cut(s)	300, 460
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	387
Cfr42I	CCGCGG	1 cut(s)	223
CsiI	ACCWGGT	1 cut(s)	204
CviAII	CATG	1 cut(s)	394
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	3 cut(s)	8, 38, 272
DpnII	GATC	3 cut(s)	6, 36, 270
DraIII	CACNNNGTG	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	157
EagI	CGGCCG	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	240
EclXI	CGGCCG	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	387
Eco52I	CGGCCG	1 cut(s)	157
EcoO109I	RGGNCCY	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	1 cut(s)	397
FaiI	YATR	2 cut(s)	395, 444
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	3 cut(s)	146, 223, 463
FokI	GGATG	2 cut(s)	92, 167
Fsp4HI	GCNGC	3 cut(s)	146, 223, 463
FspBI	CTAG	3 cut(s)	44, 149, 167
GluI	GCNGC	3 cut(s)	146, 223, 463
GsaI	CCCAGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	3 cut(s)	83, 159, 458
HapII	CCGG	3 cut(s)	138, 333, 459
Hin1II	CATG	1 cut(s)	397
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	4 cut(s)	53, 88, 191, 329
HpaII	CCGG	3 cut(s)	138, 333, 459
HphI	GGTGA	2 cut(s)	31, 430
Hpy166II	GTNNAC	3 cut(s)	195, 325, 448
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	13, 92
Hpy8I	GTNNAC	3 cut(s)	195, 325, 448
Hpy99I	CGWCG	2 cut(s)	61, 329
HpyAV	CCTTC	5 cut(s)	73, 283, 349, 400, 448
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4V	TGCA	2 cut(s)	4, 343
HpyF3I	CTNAG	1 cut(s)	350
Hsp92II	CATG	1 cut(s)	397
KroI	GCCGGC	1 cut(s)	458
KroNI	GCCGGC	1 cut(s)	460
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	6, 36, 270
LmnI	GCTCC	2 cut(s)	227, 380
LpnPI	CCDG	9 cut(s)	126, 131, 151, 191, 218, 323, 346, 369, 464
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	114
MabI	ACCWGGT	1 cut(s)	204
MaeI	CTAG	3 cut(s)	44, 149, 167
MalI	GATC	3 cut(s)	8, 38, 272
MboI	GATC	3 cut(s)	6, 36, 270
MboII	GAAGA	5 cut(s)	43, 124, 256, 259, 280
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	365
MlyI	GAGTC	3 cut(s)	62, 200, 323
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	5 cut(s)	40, 94, 117, 145, 317
MroNI	GCCGGC	1 cut(s)	458
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	3 cut(s)	138, 333, 459
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	222
NaeI	GCCGGC	1 cut(s)	460
NdeII	GATC	3 cut(s)	6, 36, 270
NgoMIV	GCCGGC	1 cut(s)	458
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	2 cut(s)	229, 388
NmeAIII	GCCGAG	1 cut(s)	397
OliI	CACNNNNGTG	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PdiI	GCCGGC	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	147, 224, 464
PleI	GAGTC	3 cut(s)	61, 199, 323
PpsI	GAGTC	3 cut(s)	61, 199, 323
PpuMI	RGGWCCY	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	229, 388
PspPI	GGNCC	1 cut(s)	387
PspPPI	RGGWCCY	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	420
SacII	CCGCGG	1 cut(s)	223
SalI	GTCGAC	1 cut(s)	323
SatI	GCNGC	3 cut(s)	146, 223, 463
Sau3AI	GATC	3 cut(s)	6, 36, 270
Sau96I	GGNCC	1 cut(s)	387
SchI	GAGTC	3 cut(s)	62, 200, 323
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	365
SexAI	ACCWGGT	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	114
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	420
SsiI	CCGC	5 cut(s)	220, 222, 225, 378, 462
SspMI	CTAG	3 cut(s)	44, 149, 167
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	422
TaqI	TCGA	1 cut(s)	324
TauI	GCSGC	2 cut(s)	225, 465
TfiI	GAWTC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	3 cut(s)	44, 149, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.