Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004355

Physical Location & Seq

Genomic Coordinates Forward (+)

31332432 .. 31334555

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32881.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGTCCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTCGTGCTCCGCCTCCGCGGTGGCGCTAAGAAGAGGAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCACAAGCATAAGAAGGTCAAGCTCGCTGTGCTCCAGTTTTACAAGGTGGATGACTCTGGAAAGGTCCAGAAGCTCAGGAAGGAGTGCCCTAATGCGGAGTGCGGCGCCGGGACTTTCATGGCCAACCACTTTGACAGGCACTACTGCGGCAAGTGTGGGCTGACCTATGTTTACCAGAAGGCCGGCGGCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27 ubiquitin

Protein Analysis

157

Amino Acids

17.68

Weight (kDa)

9.75

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	1.5e-17	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.9e-32	Ubiquitin family
Ribosomal_S27	PF01599	102 - 147	1.4e-25	Ribosomal protein S27a

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23410 AT2G47110 AT2G47110 AT3G62250
fragaria_vesca	FvH4_1g25981 FvH4_4g32881 FvH4_4g32881
malus_domestica	MD09G1293300.v1.1 MD13G1094800.v1.1 MD16G1095800.v1.1 MD17G1280900.v1.1
prunus_persica	Prupe.1G250600_v2.0.a1 Prupe.3G004600_v2.0.a1
pyrus_communis	pycom13g08260 pycom16g08190
rosa_chinensis	RchiOBHm_Chr3g0485301 RchiOBHm_Chr3g0485331 RchiOBHm_Chr3g0485341 RchiOBHm_Chr4g0441921
rosa_roxburghii	Rroxscaffold_6G00396770 Rroxscaffold_6G00397010
rosa_samantha	Rh3AG267000 Rh3AG267200 Rh3AG267300 Rh3CG301100 Rh4AG388700 Rh4CG417500
rosa_wichuraiana	Rw3G023720 Rw3G023790 Rw3G023830 Rw3G023890 Rw4G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	194
AccII	CGCG	1 cut(s)	222
AciI	CCGC	9 cut(s)	110, 160, 214, 220, 222, 371, 378, 423, 462
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	2 cut(s)	157, 396
AcyI	GRCGYC	1 cut(s)	381
AdeI	CACNNNGTG	1 cut(s)	208
AfiI	CCNNNNNNNGG	4 cut(s)	27, 49, 97, 370
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	3 cut(s)	148, 298, 349
AluI	AGCT	3 cut(s)	148, 298, 349
Alw21I	GWGCWC	2 cut(s)	213, 309
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	2 cut(s)	44, 149
AoxI	GGCC	4 cut(s)	81, 157, 396, 456
ApeKI	GCWGC	2 cut(s)	121, 145
AspLEI	GCGC	3 cut(s)	126, 230, 383
AspS9I	GGNCC	2 cut(s)	115, 340
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	2 cut(s)	44, 149
AvaII	GGWCC	2 cut(s)	115, 340
BaeGI	GKGCMC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	2 cut(s)	38, 254
Bbv12I	GWGCWC	2 cut(s)	213, 309
BbvI	GCAGC	2 cut(s)	133, 157
BccI	CCATC	2 cut(s)	44, 74
BceAI	ACGGC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	385
BfoI	RGCGCY	3 cut(s)	127, 231, 384
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	6 cut(s)	122, 146, 160, 379, 424, 463
BlsI	GCNGC	6 cut(s)	123, 147, 161, 380, 425, 464
Bme1390I	CCNGG	2 cut(s)	92, 385
Bme18I	GGWCC	2 cut(s)	115, 340
BmeT110I	CYCGRG	2 cut(s)	44, 149
BmgT120I	GGNCC	2 cut(s)	115, 340
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	2 cut(s)	92, 385
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	38, 254
BpmI	CTGGAG	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 49, 97, 370
Bse118I	RCCGGY	2 cut(s)	137, 458
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	3 cut(s)	105, 180, 331
BseLI	CCNNNNNNNGG	4 cut(s)	27, 49, 97, 370
BseMII	CTCAG	1 cut(s)	364
BseNI	ACTGG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	365
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	133, 157
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	4 cut(s)	83, 159, 398, 458
BshNI	GGYRCC	1 cut(s)	380
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	2 cut(s)	213, 309
BsiHKCI	CYCGRG	2 cut(s)	44, 149
BsiSI	CCGG	4 cut(s)	113, 138, 384, 459
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	4 cut(s)	27, 49, 97, 370
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	4 cut(s)	83, 159, 398, 458
BsoBI	CYCGRG	2 cut(s)	44, 149
Bsp1286I	GDGCHC	3 cut(s)	213, 309, 365
Bsp143I	GATC	3 cut(s)	6, 87, 270
BspACI	CCGC	9 cut(s)	110, 160, 214, 220, 222, 371, 378, 423, 462
BspANI	GGCC	4 cut(s)	83, 159, 398, 458
BspCNI	CTCAG	1 cut(s)	363
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	382
BspPI	GGATC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	380
BsrFI	RCCGGY	2 cut(s)	137, 458
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	2 cut(s)	137, 458
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	6, 87, 270
BssNI	GRCGYC	1 cut(s)	381
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	381
BstC8I	GCNNGC	4 cut(s)	139, 143, 300, 460
BstDEI	CTNAG	3 cut(s)	231, 264, 350
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	3 cut(s)	105, 180, 331
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	3 cut(s)	127, 231, 384
BstHHI	GCGC	3 cut(s)	126, 230, 383
BstKTI	GATC	3 cut(s)	9, 90, 273
BstMBI	GATC	3 cut(s)	6, 87, 270
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 304
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	90, 383
BstSLI	GKGCMC	1 cut(s)	365
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	133, 157
BstV2I	GAAGAC	2 cut(s)	38, 254
BstX2I	RGATCY	2 cut(s)	6, 87
BstYI	RGATCY	2 cut(s)	6, 87
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	4 cut(s)	83, 159, 398, 458
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	105, 180, 331
Cac8I	GCNNGC	4 cut(s)	139, 143, 300, 460
CfoI	GCGC	3 cut(s)	126, 230, 383
Cfr10I	RCCGGY	2 cut(s)	137, 458
Cfr13I	GGNCC	2 cut(s)	115, 340
Cfr42I	CCGCGG	1 cut(s)	223
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	9 cut(s)	83, 148, 159, 262, 298, 349, 398, 436, 458
CviKI_1	RGCY	9 cut(s)	83, 148, 159, 262, 298, 349, 398, 436, 458
DdeI	CTNAG	3 cut(s)	231, 264, 350
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	3 cut(s)	8, 89, 272
DpnII	GATC	3 cut(s)	6, 87, 270
DraIII	CACNNNGTG	1 cut(s)	208
EaeI	YGGCCR	2 cut(s)	157, 396
EagI	CGGCCG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
EciI	GGCGGA	1 cut(s)	203
EclXI	CGGCCG	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	115, 340
Eco52I	CGGCCG	1 cut(s)	157
Eco88I	CYCGRG	2 cut(s)	44, 149
EcoRII	CCWGG	1 cut(s)	90
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
FaeI	CATG	1 cut(s)	397
FaiI	YATR	3 cut(s)	285, 395, 444
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	1 cut(s)	393
FauI	CCCGC	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	6 cut(s)	122, 146, 160, 379, 424, 463
FokI	GGATG	3 cut(s)	92, 167, 338
Fsp4HI	GCNGC	6 cut(s)	122, 146, 160, 379, 424, 463
GlaI	GCGC	3 cut(s)	125, 229, 382
GluI	GCNGC	6 cut(s)	122, 146, 160, 379, 424, 463
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	3 cut(s)	127, 231, 384
HaeIII	GGCC	4 cut(s)	83, 159, 398, 458
HapII	CCGG	4 cut(s)	113, 138, 384, 459
HhaI	GCGC	3 cut(s)	126, 230, 383
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	3 cut(s)	124, 228, 381
HinP1I	GCGC	3 cut(s)	124, 228, 381
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	4 cut(s)	53, 191, 196, 329
HpaII	CCGG	4 cut(s)	113, 138, 384, 459
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	195, 448
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	5 cut(s)	13, 184, 333, 343, 352
Hpy8I	GTNNAC	2 cut(s)	195, 448
HpyAV	CCTTC	4 cut(s)	181, 283, 349, 448
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 304
HpyF3I	CTNAG	3 cut(s)	231, 264, 350
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	3 cut(s)	124, 228, 381
KasI	GGCGCC	1 cut(s)	380
KroI	GCCGGC	2 cut(s)	137, 458
KroNI	GCCGGC	2 cut(s)	139, 460
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	6, 87, 270
LmnI	GCTCC	2 cut(s)	216, 312
Lsp1109I	GCAGC	2 cut(s)	133, 157
LweI	GCATC	1 cut(s)	114
MaeII	ACGT	1 cut(s)	75
MalI	GATC	3 cut(s)	8, 89, 272
MboI	GATC	3 cut(s)	6, 87, 270
MboII	GAAGA	7 cut(s)	43, 124, 247, 253, 256, 259, 280
MflI	RGATCY	2 cut(s)	6, 87
MhlI	GDGCHC	3 cut(s)	213, 309, 365
MlsI	TGGCCA	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	398
Mly113I	GGCGCC	1 cut(s)	381
MlyI	GAGTC	4 cut(s)	62, 190, 200, 323
MmeI	TCCRAC	1 cut(s)	84
Mox20I	TGGCCA	1 cut(s)	398
MroNI	GCCGGC	2 cut(s)	137, 458
MscI	TGGCCA	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	4 cut(s)	113, 138, 384, 459
MspR9I	CCNGG	2 cut(s)	92, 385
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	118, 304
NaeI	GCCGGC	2 cut(s)	139, 460
NarI	GGCGCC	1 cut(s)	381
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	3 cut(s)	6, 87, 270
NgoMIV	GCCGGC	2 cut(s)	137, 458
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	1 cut(s)	382
PaeR7I	CTCGAG	2 cut(s)	44, 149
PdiI	GCCGGC	2 cut(s)	139, 460
PflFI	GACNNNGTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	6 cut(s)	123, 147, 161, 380, 425, 464
PleI	GAGTC	4 cut(s)	61, 190, 199, 323
PluTI	GGCGCC	1 cut(s)	384
PpsI	GAGTC	4 cut(s)	61, 190, 199, 323
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	382
PspPI	GGNCC	2 cut(s)	115, 340
PspXI	VCTCGAGB	2 cut(s)	44, 149
PsuI	RGATCY	2 cut(s)	6, 87
PsyI	GACNNNGTC	1 cut(s)	74
SacII	CCGCGG	1 cut(s)	223
SalI	GTCGAC	1 cut(s)	193
SatI	GCNGC	6 cut(s)	122, 146, 160, 379, 424, 463
Sau3AI	GATC	3 cut(s)	6, 87, 270
Sau96I	GGNCC	2 cut(s)	115, 340
SchI	GAGTC	4 cut(s)	62, 190, 200, 323
ScrFI	CCNGG	2 cut(s)	92, 385
SduI	GDGCHC	3 cut(s)	213, 309, 365
SfaNI	GCATC	1 cut(s)	114
SfoI	GGCGCC	1 cut(s)	382
Sfr274I	CTCGAG	2 cut(s)	44, 149
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
SinI	GGWCC	2 cut(s)	115, 340
SlaI	CTCGAG	2 cut(s)	44, 149
SmlI	CTYRAG	2 cut(s)	44, 149
SmoI	CTYRAG	2 cut(s)	44, 149
SsiI	CCGC	9 cut(s)	110, 160, 214, 220, 222, 371, 378, 423, 462
SspDI	GGCGCC	1 cut(s)	380
StyD4I	CCNGG	2 cut(s)	90, 383
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	4 cut(s)	45, 69, 150, 194
TauI	GCSGC	4 cut(s)	162, 381, 426, 465
TseI	GCWGC	2 cut(s)	121, 145
TspDTI	ATGAA	1 cut(s)	382
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	2 cut(s)	115, 340
XhoI	CTCGAG	2 cut(s)	44, 149
XmiI	GTMKAC	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.