Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004355

Physical Location & Seq

Genomic Coordinates Forward (+)

37588569 .. 37589101

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1293300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCTTCCGACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGGACCCTTGCCGACTACAACATCCAGAAGGAGTCGACTCTGCACCTGGTGCTCCGCCTGCGCGGTGGCGCCAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCTGTCCTCCAGTTCTACAAGGTCGACGATTCTGGAAAAGTCCAGAGGCTGAGAAAGGAGTGCCCCAACGCTGAGTGTGGCGCCGGGACTTTCATGGCCAACCATTTCGACAGGCACTACTGTGGTAAGTGTGGTCTCACCTATGTGTACCAGAAGGCTGGCGGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27 ubiquitin

Protein Analysis

157

Amino Acids

17.71

Weight (kDa)

9.77

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	1.5e-17	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.9e-32	Ubiquitin family
Ribosomal_S27	PF01599	102 - 147	3.5e-26	Ribosomal protein S27a

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23410 AT2G47110 AT2G47110 AT3G62250
fragaria_vesca	FvH4_1g25981 FvH4_4g32881 FvH4_4g32881
malus_domestica	MD09G1293300.v1.1 MD13G1094800.v1.1 MD16G1095800.v1.1 MD17G1280900.v1.1
prunus_persica	Prupe.1G250600_v2.0.a1 Prupe.3G004600_v2.0.a1
pyrus_communis	pycom13g08260 pycom16g08190
rosa_chinensis	RchiOBHm_Chr3g0485301 RchiOBHm_Chr3g0485331 RchiOBHm_Chr3g0485341 RchiOBHm_Chr4g0441921
rosa_roxburghii	Rroxscaffold_6G00396770 Rroxscaffold_6G00397010
rosa_samantha	Rh3AG267000 Rh3AG267200 Rh3AG267300 Rh3CG301100 Rh4AG388700 Rh4CG417500
rosa_wichuraiana	Rw3G023720 Rw3G023790 Rw3G023830 Rw3G023890 Rw4G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	227, 380
AccI	GTMKAC	2 cut(s)	194, 324
AccII	CGCG	1 cut(s)	222
AciI	CCGC	4 cut(s)	110, 214, 222, 462
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	2 cut(s)	157, 396
AcyI	GRCGYC	2 cut(s)	228, 381
AdeI	CACNNNGTG	1 cut(s)	208
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	2 cut(s)	27, 97
AjnI	CCWGG	2 cut(s)	90, 204
AleI	CACNNNNGTG	2 cut(s)	420, 443
AluBI	AGCT	2 cut(s)	148, 298
AluI	AGCT	2 cut(s)	148, 298
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	1 cut(s)	82
AlwNI	CAGNNNCTG	1 cut(s)	349
AoxI	GGCC	3 cut(s)	81, 157, 396
ApeKI	GCWGC	2 cut(s)	121, 145
AspLEI	GCGC	4 cut(s)	126, 222, 230, 383
AspS9I	GGNCC	2 cut(s)	115, 162
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	304, 430
AvaII	GGWCC	2 cut(s)	115, 162
BaeGI	GKGCMC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	398
BanI	GGYRCC	2 cut(s)	227, 380
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbsI	GAAGAC	3 cut(s)	38, 48, 254
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	133, 157
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	2 cut(s)	92, 206
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	1 cut(s)	44
BfoI	RGCGCY	3 cut(s)	127, 231, 384
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	3 cut(s)	122, 146, 463
BlsI	GCNGC	3 cut(s)	123, 147, 464
Bme1390I	CCNGG	3 cut(s)	92, 206, 385
Bme18I	GGWCC	2 cut(s)	115, 162
BmgT120I	GGNCC	2 cut(s)	115, 162
BmiI	GGNNCC	3 cut(s)	164, 229, 382
BmrFI	CCNGG	3 cut(s)	92, 206, 385
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	3 cut(s)	38, 48, 254
BpmI	CTGGAG	2 cut(s)	170, 293
BpuMI	CCSGG	1 cut(s)	385
BsaHI	GRCGYC	2 cut(s)	228, 381
BsaI	GGTCTC	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 97
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	92, 206
BseGI	GGATG	2 cut(s)	105, 180
BseLI	CCNNNNNNNGG	2 cut(s)	27, 97
BseMII	CTCAG	2 cut(s)	341, 363
BseNI	ACTGG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	365
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	133, 157
BsgI	GTGCAG	1 cut(s)	185
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	83, 159, 398
BshNI	GGYRCC	2 cut(s)	227, 380
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	4 cut(s)	113, 138, 160, 384
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	27, 97
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	3 cut(s)	83, 159, 398
Bso31I	GGTCTC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	213, 365
Bsp143I	GATC	3 cut(s)	6, 87, 270
BspACI	CCGC	4 cut(s)	110, 214, 222, 462
BspANI	GGCC	3 cut(s)	83, 159, 398
BspCNI	CTCAG	2 cut(s)	342, 364
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	164, 229, 382
BspPI	GGATC	1 cut(s)	82
BspT107I	GGYRCC	2 cut(s)	227, 380
BspTNI	GGTCTC	1 cut(s)	440
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	137
BssMI	GATC	3 cut(s)	6, 87, 270
BssNI	GRCGYC	2 cut(s)	228, 381
Bst2UI	CCWGG	2 cut(s)	92, 206
Bst4CI	ACNGT	1 cut(s)	422
BstACI	GRCGYC	2 cut(s)	228, 381
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstC8I	GCNNGC	5 cut(s)	139, 143, 218, 300, 460
BstDEI	CTNAG	2 cut(s)	350, 372
BstF5I	GGATG	2 cut(s)	105, 180
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	3 cut(s)	127, 231, 384
BstHHI	GCGC	4 cut(s)	126, 222, 230, 383
BstKTI	GATC	3 cut(s)	9, 90, 273
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	3 cut(s)	6, 87, 270
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 208, 217
BstNI	CCWGG	2 cut(s)	92, 206
BstSCI	CCNGG	3 cut(s)	90, 204, 383
BstSLI	GKGCMC	1 cut(s)	365
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	133, 157
BstV2I	GAAGAC	3 cut(s)	38, 48, 254
BstX2I	RGATCY	2 cut(s)	6, 87
BstXI	CCANNNNNNTGG	1 cut(s)	458
BstYI	RGATCY	2 cut(s)	6, 87
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	83, 159, 398
BtsCI	GGATG	2 cut(s)	105, 180
Cac8I	GCNNGC	5 cut(s)	139, 143, 218, 300, 460
CaiI	CAGNNNCTG	1 cut(s)	349
CfoI	GCGC	4 cut(s)	126, 222, 230, 383
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	115, 162
CsiI	ACCWGGT	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	8 cut(s)	83, 148, 159, 262, 298, 349, 398, 458
CviKI_1	RGCY	8 cut(s)	83, 148, 159, 262, 298, 349, 398, 458
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	2 cut(s)	350, 372
DinI	GGCGCC	2 cut(s)	229, 382
DpnI	GATC	3 cut(s)	8, 89, 272
DpnII	GATC	3 cut(s)	6, 87, 270
DraIII	CACNNNGTG	1 cut(s)	208
EaeI	YGGCCR	2 cut(s)	157, 396
EagI	CGGCCG	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	203
EclXI	CGGCCG	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	2 cut(s)	115, 162
Eco52I	CGGCCG	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	90, 204
EgeI	GGCGCC	2 cut(s)	229, 382
EheI	GGCGCC	2 cut(s)	229, 382
FaeI	CATG	1 cut(s)	397
FaiI	YATR	2 cut(s)	395, 444
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	1 cut(s)	393
FauI	CCCGC	1 cut(s)	117
FblI	GTMKAC	2 cut(s)	194, 324
Fnu4HI	GCNGC	3 cut(s)	122, 146, 463
FokI	GGATG	2 cut(s)	92, 167
Fsp4HI	GCNGC	3 cut(s)	122, 146, 463
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	4 cut(s)	125, 221, 229, 382
GluI	GCNGC	3 cut(s)	122, 146, 463
GsuI	CTGGAG	2 cut(s)	170, 293
HaeII	RGCGCY	3 cut(s)	127, 231, 384
HaeIII	GGCC	3 cut(s)	83, 159, 398
HapII	CCGG	4 cut(s)	113, 138, 160, 384
HhaI	GCGC	4 cut(s)	126, 222, 230, 383
Hin1I	GRCGYC	2 cut(s)	228, 381
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	4 cut(s)	124, 220, 228, 381
HinP1I	GCGC	4 cut(s)	124, 220, 228, 381
HincII	GTYRAC	2 cut(s)	195, 325
HindII	GTYRAC	2 cut(s)	195, 325
HinfI	GANTC	4 cut(s)	53, 191, 196, 329
HpaII	CCGG	4 cut(s)	113, 138, 160, 384
HphI	GGTGA	2 cut(s)	304, 430
Hpy166II	GTNNAC	3 cut(s)	195, 325, 448
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	4 cut(s)	13, 184, 333, 343
Hpy8I	GTNNAC	3 cut(s)	195, 325, 448
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	4 cut(s)	73, 181, 283, 448
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4V	TGCA	2 cut(s)	4, 202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 208, 217
HpyF3I	CTNAG	2 cut(s)	350, 372
Hsp92I	GRCGYC	2 cut(s)	228, 381
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	4 cut(s)	124, 220, 228, 381
KasI	GGCGCC	2 cut(s)	227, 380
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	6, 87, 270
LmnI	GCTCC	1 cut(s)	216
Lsp1109I	GCAGC	2 cut(s)	133, 157
LweI	GCATC	1 cut(s)	114
MabI	ACCWGGT	1 cut(s)	204
MaeI	CTAG	1 cut(s)	44
MalI	GATC	3 cut(s)	8, 89, 272
MboI	GATC	3 cut(s)	6, 87, 270
MboII	GAAGA	7 cut(s)	43, 48, 124, 256, 259, 277, 280
MflI	RGATCY	2 cut(s)	6, 87
MhlI	GDGCHC	2 cut(s)	213, 365
MlsI	TGGCCA	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	398
Mly113I	GGCGCC	2 cut(s)	228, 381
MlyI	GAGTC	3 cut(s)	62, 190, 200
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	6 cut(s)	40, 94, 137, 145, 317, 339
Mox20I	TGGCCA	1 cut(s)	398
MroNI	GCCGGC	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	398
MslI	CAYNNNNRTG	2 cut(s)	420, 443
Msp20I	TGGCCA	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	4 cut(s)	113, 138, 160, 384
MspR9I	CCNGG	3 cut(s)	92, 206, 385
MvaI	CCWGG	2 cut(s)	92, 206
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	118, 208, 217
NaeI	GCCGGC	1 cut(s)	139
NarI	GGCGCC	2 cut(s)	228, 381
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	3 cut(s)	6, 87, 270
NgoMIV	GCCGGC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	3 cut(s)	164, 229, 382
OliI	CACNNNNGTG	2 cut(s)	420, 443
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PdiI	GCCGGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	329
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	3 cut(s)	123, 147, 464
PleI	GAGTC	3 cut(s)	61, 190, 199
PluTI	GGCGCC	2 cut(s)	231, 384
PpsI	GAGTC	3 cut(s)	61, 190, 199
Psp6I	CCWGG	2 cut(s)	90, 204
PspGI	CCWGG	2 cut(s)	90, 204
PspN4I	GGNNCC	3 cut(s)	164, 229, 382
PspPI	GGNCC	2 cut(s)	115, 162
PstNI	CAGNNNCTG	1 cut(s)	349
PsuI	RGATCY	2 cut(s)	6, 87
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	2 cut(s)	420, 443
SalI	GTCGAC	2 cut(s)	193, 323
SatI	GCNGC	3 cut(s)	122, 146, 463
Sau3AI	GATC	3 cut(s)	6, 87, 270
Sau96I	GGNCC	2 cut(s)	115, 162
SchI	GAGTC	3 cut(s)	62, 190, 200
ScrFI	CCNGG	3 cut(s)	92, 206, 385
SduI	GDGCHC	2 cut(s)	213, 365
SetI	ASST	8 cut(s)	51, 150, 207, 254, 294, 300, 324, 443
SexAI	ACCWGGT	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	114
SfoI	GGCGCC	2 cut(s)	229, 382
SinI	GGWCC	2 cut(s)	115, 162
SmiMI	CAYNNNNRTG	2 cut(s)	420, 443
SsiI	CCGC	4 cut(s)	110, 214, 222, 462
SspDI	GGCGCC	2 cut(s)	227, 380
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	3 cut(s)	90, 204, 383
TaaI	ACNGT	1 cut(s)	422
TaqI	TCGA	4 cut(s)	69, 194, 324, 408
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	1 cut(s)	329
TseI	GCWGC	2 cut(s)	121, 145
TspDTI	ATGAA	1 cut(s)	382
VpaK11BI	GGWCC	2 cut(s)	115, 162
XmiI	GTMKAC	2 cut(s)	194, 324
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.