Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004355

Physical Location & Seq

Genomic Coordinates Reverse (-)

30305131 .. 30305601

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTGGAGGTGGAGTCGTCGGACACGATCGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCGCCGGACCAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCCGACTACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTTCGTCTCCGCGGCGGAGCCAAGAAGCGTAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTCAAGCTCGCCGTTCTCCAGTTCTACAAGGTCGACGACTCCGGCAAGGTGCAGAAGCTCAGGAAGGAGTGCCCCAATGCCGAGTGCGGCGCCGGGACCTTCATGGCCAACCATTTTGACAGGCACTACTGTGGTAAGTGTGGCCTCACCTATGTTTACCAGAAGGCCGGTGGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27 ubiquitin

Protein Analysis

156

Amino Acids

17.68

Weight (kDa)

9.75

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	1.5e-17	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.9e-32	Ubiquitin family
Ribosomal_S27	PF01599	102 - 147	1.4e-25	Ribosomal protein S27a

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23410 AT2G47110 AT2G47110 AT3G62250
fragaria_vesca	FvH4_1g25981 FvH4_4g32881 FvH4_4g32881
malus_domestica	MD09G1293300.v1.1 MD13G1094800.v1.1 MD16G1095800.v1.1 MD17G1280900.v1.1
prunus_persica	Prupe.1G250600_v2.0.a1 Prupe.3G004600_v2.0.a1
pyrus_communis	pycom13g08260 pycom16g08190
rosa_chinensis	RchiOBHm_Chr3g0485301 RchiOBHm_Chr3g0485331 RchiOBHm_Chr3g0485341 RchiOBHm_Chr4g0441921
rosa_roxburghii	Rroxscaffold_6G00396770 Rroxscaffold_6G00397010
rosa_samantha	Rh3AG267000 Rh3AG267200 Rh3AG267300 Rh3CG301100 Rh4AG388700 Rh4CG417500
rosa_wichuraiana	Rw3G023720 Rw3G023790 Rw3G023830 Rw3G023890 Rw4G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	1 cut(s)	222
AciI	CCGC	5 cut(s)	110, 220, 222, 225, 378
AcoI	YGGCCR	2 cut(s)	157, 396
AcyI	GRCGYC	1 cut(s)	381
AdeI	CACNNNGTG	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	27, 49
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	42, 204
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	3 cut(s)	148, 298, 349
AluI	AGCT	3 cut(s)	148, 298, 349
Alw26I	GTCTC	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	5 cut(s)	81, 157, 396, 433, 456
ApeKI	GCWGC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	115, 387
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	31, 430
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	2 cut(s)	115, 387
BaeGI	GKGCMC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbsI	GAAGAC	2 cut(s)	38, 254
BbvI	GCAGC	1 cut(s)	157
BceAI	ACGGC	2 cut(s)	172, 287
BciT130I	CCWGG	2 cut(s)	44, 206
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	384
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	3 cut(s)	146, 223, 379
BlsI	GCNGC	3 cut(s)	147, 224, 380
Bme1390I	CCNGG	3 cut(s)	44, 206, 385
Bme18I	GGWCC	2 cut(s)	115, 387
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	115, 387
BmiI	GGNNCC	3 cut(s)	229, 382, 388
BmrFI	CCNGG	3 cut(s)	44, 206, 385
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	38, 254
BpmI	CTGGAG	2 cut(s)	65, 293
Bpu10I	CCTNAGC	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	42, 220
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 49
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	44, 206
BseDI	CCNNGG	2 cut(s)	42, 220
BseGI	GGATG	2 cut(s)	105, 180
BseLI	CCNNNNNNNGG	2 cut(s)	27, 49
BseMII	CTCAG	1 cut(s)	364
BseNI	ACTGG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	365
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	2 cut(s)	69, 160
BshFI	GGCC	5 cut(s)	83, 159, 398, 435, 458
BshNI	GGYRCC	1 cut(s)	380
BsiEI	CGRYCG	2 cut(s)	69, 160
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	5 cut(s)	113, 138, 333, 384, 459
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	27, 49
BsmAI	GTCTC	1 cut(s)	221
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	5 cut(s)	83, 159, 398, 435, 458
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	4 cut(s)	6, 36, 66, 270
BspACI	CCGC	5 cut(s)	110, 220, 222, 225, 378
BspANI	GGCC	5 cut(s)	83, 159, 398, 435, 458
BspCNI	CTCAG	1 cut(s)	363
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	229, 382, 388
BspT107I	GGYRCC	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	2 cut(s)	42, 220
BssMI	GATC	4 cut(s)	6, 36, 66, 270
BssNI	GRCGYC	1 cut(s)	381
Bst2UI	CCWGG	2 cut(s)	44, 206
Bst4CI	ACNGT	1 cut(s)	422
BstACI	GRCGYC	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	350
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	105, 180
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	4 cut(s)	9, 39, 69, 273
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	4 cut(s)	6, 36, 66, 270
BstMCI	CGRYCG	2 cut(s)	69, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	2 cut(s)	44, 206
BstSCI	CCNGG	3 cut(s)	42, 204, 383
BstSLI	GKGCMC	1 cut(s)	365
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	2 cut(s)	38, 254
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	5 cut(s)	83, 159, 398, 435, 458
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	105, 180
Cac8I	GCNNGC	1 cut(s)	300
CfoI	GCGC	1 cut(s)	383
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	2 cut(s)	115, 387
Cfr42I	CCGCGG	1 cut(s)	223
CsiI	ACCWGGT	1 cut(s)	204
CviAII	CATG	1 cut(s)	394
DdeI	CTNAG	1 cut(s)	350
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	4 cut(s)	8, 38, 68, 272
DpnII	GATC	4 cut(s)	6, 36, 66, 270
DraIII	CACNNNGTG	1 cut(s)	208
EaeI	YGGCCR	2 cut(s)	157, 396
EagI	CGGCCG	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	240
EclXI	CGGCCG	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	115, 387
Eco52I	CGGCCG	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	387
EcoRII	CCWGG	2 cut(s)	42, 204
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	1 cut(s)	397
FaiI	YATR	2 cut(s)	395, 444
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	1 cut(s)	393
FauI	CCCGC	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	3 cut(s)	146, 223, 379
FokI	GGATG	2 cut(s)	92, 167
Fsp4HI	GCNGC	3 cut(s)	146, 223, 379
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	3 cut(s)	146, 223, 379
GsuI	CTGGAG	2 cut(s)	65, 293
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	5 cut(s)	83, 159, 398, 435, 458
HapII	CCGG	5 cut(s)	113, 138, 333, 384, 459
HhaI	GCGC	1 cut(s)	383
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	4 cut(s)	53, 88, 191, 329
HpaII	CCGG	5 cut(s)	113, 138, 333, 384, 459
HphI	GGTGA	2 cut(s)	31, 430
Hpy166II	GTNNAC	3 cut(s)	195, 325, 448
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	4 cut(s)	13, 92, 184, 352
Hpy8I	GTNNAC	3 cut(s)	195, 325, 448
Hpy99I	CGWCG	2 cut(s)	61, 329
HpyAV	CCTTC	6 cut(s)	73, 181, 283, 349, 400, 448
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	4, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	350
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	1 cut(s)	381
KasI	GGCGCC	1 cut(s)	380
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	6, 36, 66, 270
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	114
MabI	ACCWGGT	1 cut(s)	204
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	75
MalI	GATC	4 cut(s)	8, 38, 68, 272
MboI	GATC	4 cut(s)	6, 36, 66, 270
MboII	GAAGA	5 cut(s)	43, 124, 256, 259, 280
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	365
MlsI	TGGCCA	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	398
Mly113I	GGCGCC	1 cut(s)	381
MlyI	GAGTC	3 cut(s)	62, 200, 323
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	5 cut(s)	40, 94, 117, 145, 446
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	5 cut(s)	113, 138, 333, 384, 459
MspR9I	CCNGG	3 cut(s)	44, 206, 385
MvaI	CCWGG	2 cut(s)	44, 206
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	118
NarI	GGCGCC	1 cut(s)	381
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	4 cut(s)	6, 36, 66, 270
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	3 cut(s)	229, 382, 388
NmeAIII	GCCGAG	1 cut(s)	397
OliI	CACNNNNGTG	1 cut(s)	420
PaeR7I	CTCGAG	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 62
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	147, 224, 380
Ple19I	CGATCG	1 cut(s)	69
PleI	GAGTC	3 cut(s)	61, 199, 323
PluTI	GGCGCC	1 cut(s)	384
PpsI	GAGTC	3 cut(s)	61, 199, 323
PpuMI	RGGWCCY	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	42, 204
PspGI	CCWGG	2 cut(s)	42, 204
PspN4I	GGNNCC	3 cut(s)	229, 382, 388
PspPI	GGNCC	2 cut(s)	115, 387
PspPPI	RGGWCCY	1 cut(s)	387
PspXI	VCTCGAGB	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	6
PvuI	CGATCG	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	420
SacII	CCGCGG	1 cut(s)	223
SalI	GTCGAC	1 cut(s)	323
SatI	GCNGC	3 cut(s)	146, 223, 379
Sau3AI	GATC	4 cut(s)	6, 36, 66, 270
Sau96I	GGNCC	2 cut(s)	115, 387
SchI	GAGTC	3 cut(s)	62, 200, 323
ScrFI	CCNGG	3 cut(s)	44, 206, 385
SduI	GDGCHC	1 cut(s)	365
SexAI	ACCWGGT	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	114
SfoI	GGCGCC	1 cut(s)	382
Sfr274I	CTCGAG	1 cut(s)	149
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
SinI	GGWCC	2 cut(s)	115, 387
SlaI	CTCGAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SsiI	CCGC	5 cut(s)	110, 220, 222, 225, 378
SspDI	GGCGCC	1 cut(s)	380
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	3 cut(s)	42, 204, 383
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	69, 150, 324
TauI	GCSGC	2 cut(s)	225, 381
TfiI	GAWTC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	382
VpaK11BI	GGWCC	2 cut(s)	115, 387
XcmI	CCANNNNNNNNNTGG	2 cut(s)	202, 458
XhoI	CTCGAG	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.