AT1G23440

Pyroglutamyl peptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010303
Physical Location & Seq
Forward (+)
8321611 .. 8324497
2887 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23440.3

Sequence Viewer

Length: 654 bp
ATGGGTTCTGAAGGACCAAAAGCAATAACGATTCATGTGACTGGTTTCAAGAAATTTCTTGGGGTTTCAGAGAATCCTACTGAGAAGATAGCTAATGGTTTGAAATCGTATGTGGAGAAACGAGGTTTGCCTTCTGGATTGTGTCTTGGTAGCTGTAGTGTTCTTGACACTGCTGGGGAAGGTGCAAAATCTAAGCTTTATGAGGTTTTGGAGTCTAGTGTTGTCTCTGGAGATAAGAACAACAATGGAACTGTTGTCTGGCTTCATCTCGGGGTGAATAGCGGAGCGACAAAATTCGCCATTGAAAGACAGGCAGTGAACGAAGCTCATTTCCGTTGTCCTGATGAATTGGGCTGGCAACCGCAGCGGCTTCCCATAGTTGTTGAAGATGGAGGCATTTCAAAGGCAAAAGAGACTTCATGCTCGACGGAGTCCATTTTCCAGTTATTAAAGAAGAAAGGCTTTGAGGTTGTTCAATCAGACGATGCTGGACGTTTTGTATGCAACTACGTGTACTATCACTCTCTAAGGTTCGCAGAGCAAAAGGGACACAAGTCTCTGTTCGTTCACGTTCCTCTCTTCTCCAAAATCGATGAAGATACTCAAATGCAGTTCGTGGCTTCACTCTTGGAGGCAATTGCAGCTACTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C15

Protein Analysis

217

Amino Acids

23.62

Weight (kDa)

6.6

Isoelectric Point (pI)

27.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C15 PF01470 11 - 196 1.2e-14 Pyroglutamyl peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 282, 362, 367
AcsI RAATTY 2 cut(s) 53, 293
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 1 cut(s) 515
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 6 cut(s) 49, 103, 305, 386, 402, 476
AluBI AGCT 5 cut(s) 92, 153, 196, 326, 644
AluI AGCT 5 cut(s) 92, 153, 196, 326, 644
Alw26I GTCTC 3 cut(s) 229, 407, 561
Ama87I CYCGRG 1 cut(s) 269
ApeKI GCWGC 2 cut(s) 364, 641
ApoI RAATTY 2 cut(s) 53, 293
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 383
BcoDI GTCTC 3 cut(s) 229, 407, 561
BfaI CTAG 2 cut(s) 216, 652
BfmI CTRYAG 1 cut(s) 154
BisI GCNGC 3 cut(s) 365, 368, 642
BlsI GCNGC 3 cut(s) 366, 369, 643
Bme18I GGWCC 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 14
BmsI GCATC 1 cut(s) 475
BoxI GACNNNNGTC 1 cut(s) 553
BpmI CTGGAG 1 cut(s) 249
Bsa29I ATCGAT 1 cut(s) 591
BsaAI YACGTR 1 cut(s) 511
Bse1I ACTGG 2 cut(s) 46, 442
BseCI ATCGAT 1 cut(s) 591
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 2 cut(s) 46, 442
BseXI GCAGC 1 cut(s) 376
BseYI CCCAGC 1 cut(s) 173
BshVI ATCGAT 1 cut(s) 591
BsiHKCI CYCGRG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 561
BsmAI GTCTC 3 cut(s) 229, 407, 561
BsmFI GGGAC 1 cut(s) 561
BsoBI CYCGRG 1 cut(s) 269
BspACI CCGC 3 cut(s) 282, 362, 367
BspCNI CTCAG 1 cut(s) 73
BspDI ATCGAT 1 cut(s) 591
BsrI ACTGG 2 cut(s) 46, 442
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 584
BstBAI YACGTR 1 cut(s) 511
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 3 cut(s) 81, 192, 527
BstMAI GTCTC 3 cut(s) 229, 407, 561
BstMWI GCNNNNNNNGC 2 cut(s) 364, 641
BstPAI GACNNNNGTC 1 cut(s) 553
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 376
Bsu15I ATCGAT 1 cut(s) 591
BsuTUI ATCGAT 1 cut(s) 591
BtsI GCAGTG 2 cut(s) 168, 321
BtsIMutI CAGTG 2 cut(s) 168, 321
Cac8I GCNNGC 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 14
ClaI ATCGAT 1 cut(s) 591
Csp6I GTAC 1 cut(s) 514
CviAII CATG 2 cut(s) 35, 420
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 3 cut(s) 81, 192, 527
Eam1104I CTCTTC 1 cut(s) 584
EarI CTCTTC 1 cut(s) 584
Eco47I GGWCC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 269
FaeI CATG 2 cut(s) 38, 423
FaiI YATR 6 cut(s) 36, 111, 201, 377, 421, 502
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FaqI GGGAC 1 cut(s) 561
FatI CATG 2 cut(s) 34, 419
Fnu4HI GCNGC 3 cut(s) 365, 368, 642
Fsp4HI GCNGC 3 cut(s) 365, 368, 642
FspBI CTAG 2 cut(s) 216, 652
GluI GCNGC 3 cut(s) 365, 368, 642
GsaI CCCAGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 249
Hin1II CATG 2 cut(s) 38, 423
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 4 cut(s) 31, 73, 212, 431
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 3 cut(s) 319, 514, 568
Hpy188I TCNGA 3 cut(s) 10, 70, 481
Hpy188III TCNNGA 5 cut(s) 49, 135, 164, 228, 341
Hpy8I GTNNAC 3 cut(s) 319, 514, 568
Hpy99I CGWCG 1 cut(s) 430
HpyAV CCTTC 3 cut(s) 5, 141, 173
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 3 cut(s) 493, 510, 570
HpyCH4V TGCA 4 cut(s) 185, 504, 610, 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 364, 641
HpyF3I CTNAG 3 cut(s) 81, 192, 527
HpySE526I ACGT 3 cut(s) 493, 510, 570
Hsp92II CATG 2 cut(s) 38, 423
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 475
MaeI CTAG 2 cut(s) 216, 652
MaeII ACGT 3 cut(s) 493, 510, 570
MaeIII GTNAC 1 cut(s) 37
MboII GAAGA 5 cut(s) 97, 398, 466, 571, 608
MfeI CAATTG 1 cut(s) 636
MluCI AATT 4 cut(s) 53, 293, 347, 636
MlyI GAGTC 2 cut(s) 221, 440
MnlI CCTC 6 cut(s) 116, 196, 386, 460, 585, 625
MseI TTAA 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 367
MunI CAATTG 1 cut(s) 636
MwoI GCNNNNNNNGC 2 cut(s) 364, 641
NlaIII CATG 2 cut(s) 38, 423
NmuCI GTSAC 1 cut(s) 37
PfeI GAWTC 2 cut(s) 31, 73
PflFI GACNNNGTC 1 cut(s) 430
PkrI GCNGC 3 cut(s) 366, 369, 643
PleI GAGTC 2 cut(s) 220, 439
PpsI GAGTC 2 cut(s) 220, 439
Ppu21I YACGTR 1 cut(s) 511
PshAI GACNNNNGTC 1 cut(s) 553
PspFI CCCAGC 1 cut(s) 173
PspPI GGNCC 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 430
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 3 cut(s) 365, 368, 642
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 2 cut(s) 221, 440
SfaNI GCATC 1 cut(s) 475
SfcI CTRYAG 1 cut(s) 154
SinI GGWCC 1 cut(s) 14
Sse9I AATT 4 cut(s) 53, 293, 347, 636
SsiI CCGC 3 cut(s) 282, 362, 367
SspMI CTAG 2 cut(s) 216, 652
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 3 cut(s) 496, 513, 573
TaqI TCGA 2 cut(s) 425, 591
TasI AATT 4 cut(s) 53, 293, 347, 636
TatI WGTACW 1 cut(s) 513
TauI GCSGC 1 cut(s) 370
TfiI GAWTC 2 cut(s) 31, 73
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TscAI CASTG 2 cut(s) 175, 321
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 2 cut(s) 364, 641
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 5 cut(s) 23, 254, 360, 408, 609
TspGWI ACGGA 2 cut(s) 323, 443
TspRI CASTG 2 cut(s) 175, 321
Tth111I GACNNNGTC 1 cut(s) 430
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 2 cut(s) 53, 293
XspI CTAG 2 cut(s) 216, 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.