Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010303

Physical Location & Seq

Genomic Coordinates Reverse (-)

5463772 .. 5465726

Gene Structure 1955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08220.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGATCAGAAGGACCAAAGAGTGTGGTTGTTCATGTGAGCGGGTTCAAGAAGTTCCAGGGGGTTGCTGAGAATCCCACAGAGACTATAGTTAGCAATCTGAGGGTGTTTGTTGAGAAGAGAGGGTTGCCTGCTGGTCTTAAACTTGGCAGCTGTGATGTTCTTGAAACAGCAGGAGACGGTGCGCGCGCTGCTCTTTACAAGGCCATGGAATCGGGGATTTCAGCAACCGATTCTAAGAGCAATGAACAAGTCGTATGGCTTCACTTGGGGGTAAATAGTGGGGCTGTAAAGTTTGCTATTGAGCGGCAAGCAGTAAATGAAGCCACTTTCCGCTGTCCAGATGAGTTAGGATGGCAACCTCAGCAACAACCAATAGTCCCTGAGGATGGAGGAACTTCTCGAGTGAGAGAGACATGTTGCTCGACCGAGGCAATCCTTAAGATATTGAAGAAGAAGGGATATGATGTGGCAACATCAGATGATGCCGGGCGCTTTGTGTGCAATTATGTCTACTATCATTCCCTCCGTTTTGCAGAAGAAAAGGGCCACAAATCTTTATTCGTCCACGTTCCTCTCTTTTCCAGAATCAATGAAGAAACTCAGATGCGCTTTGTGGCCTCCCTTTTGGAGGCGATTGCAGCTACATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C15

Protein Analysis

218

Amino Acids

23.67

Weight (kDa)

6.53

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23440 AT1G23440
fragaria_vesca	FvH4_4g32860 FvH4_4g32860
malus_domestica	MD13G1094400.v1.1
prunus_persica	Prupe.1G251000_v2.0.a1 Prupe.1G251000_v2.0.a1
pyrus_communis	pycom13g08220 pycom16g08150
rosa_chinensis	RchiOBHm_Chr4g0441871
rosa_laevigata	RLG00000006059
rosa_multiflora	Rmu_sc0008316.1_g000010
rosa_roxburghii	Rroxscaffold_5G00382690
rosa_rugosa	Rorug04G0336700 Rorug04G0336800 Rorug04G0336800
rosa_samantha	Rh4AG388400 Rh4BG402000 Rh4CG417100 Rh4DG395400
rosa_wichuraiana	Rw4G033530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	42, 307
AccI	GTMKAC	1 cut(s)	513
AccII	CGCG	2 cut(s)	187, 189
AciI	CCGC	3 cut(s)	42, 307, 334
AclWI	GGATC	1 cut(s)	13
AfiI	CCNNNNNNNGG	2 cut(s)	389, 631
AflII	CTTAAG	1 cut(s)	440
AflIII	ACRYGT	2 cut(s)	416, 647
AgsI	TTSAA	3 cut(s)	49, 167, 451
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	2 cut(s)	153, 644
AluI	AGCT	2 cut(s)	153, 644
Alw26I	GTCTC	3 cut(s)	77, 171, 407
AlwI	GGATC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	402
AoxI	GGCC	3 cut(s)	204, 547, 618
ApeKI	GCWGC	3 cut(s)	150, 191, 641
AspLEI	GCGC	5 cut(s)	187, 189, 191, 495, 612
AspS9I	GGNCC	2 cut(s)	14, 547
AsuC2I	CCSGG	1 cut(s)	490
AvaI	CYCGRG	1 cut(s)	402
AvaII	GGWCC	1 cut(s)	14
AxyI	CCTNAGG	1 cut(s)	384
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	162, 178
BccI	CCATC	2 cut(s)	348, 383
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	490
BcoDI	GTCTC	3 cut(s)	77, 171, 407
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	496
BfrI	CTTAAG	1 cut(s)	440
BisI	GCNGC	4 cut(s)	151, 192, 308, 642
BlsI	GCNGC	4 cut(s)	152, 193, 309, 643
Bme1390I	CCNGG	2 cut(s)	59, 490
Bme18I	GGWCC	1 cut(s)	14
BmeT110I	CYCGRG	1 cut(s)	402
BmgT120I	GGNCC	2 cut(s)	14, 547
BmrFI	CCNGG	2 cut(s)	59, 490
BmsI	GCATC	2 cut(s)	475, 597
Bpu10I	CCTNAGC	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	490
BsaJI	CCNNGG	3 cut(s)	58, 207, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 631
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	3 cut(s)	58, 207, 429
BseGI	GGATG	2 cut(s)	359, 394
BseLI	CCNNNNNNNGG	2 cut(s)	389, 631
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	5 cut(s)	60, 92, 375, 377, 617
BsePI	GCGCGC	2 cut(s)	185, 187
BseXI	GCAGC	2 cut(s)	162, 178
Bsh1236I	CGCG	2 cut(s)	187, 189
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	206, 549, 620
BsiEI	CGRYCG	1 cut(s)	429
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	2 cut(s)	389, 631
BsmAI	GTCTC	3 cut(s)	77, 171, 407
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	3 cut(s)	206, 549, 620
BsoBI	CYCGRG	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	5
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	3 cut(s)	42, 307, 334
BspANI	GGCC	3 cut(s)	206, 549, 620
BspCNI	CTCAG	5 cut(s)	61, 93, 376, 376, 616
BspFNI	CGCG	2 cut(s)	187, 189
BspPI	GGATC	1 cut(s)	13
BspTI	CTTAAG	1 cut(s)	440
BsrBI	CCGCTC	2 cut(s)	42, 307
BsrDI	GCAATG	1 cut(s)	250
BssECI	CCNNGG	3 cut(s)	58, 207, 429
BssHII	GCGCGC	2 cut(s)	185, 187
BssMI	GATC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	113
BstAFI	CTTAAG	1 cut(s)	440
BstC8I	GCNNGC	4 cut(s)	132, 187, 189, 312
BstDEI	CTNAG	6 cut(s)	69, 101, 237, 363, 384, 603
BstDSI	CCRYGG	1 cut(s)	207
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstF5I	GGATG	2 cut(s)	359, 394
BstFNI	CGCG	2 cut(s)	187, 189
BstH2I	RGCGCY	1 cut(s)	496
BstHHI	GCGC	5 cut(s)	187, 189, 191, 495, 612
BstKTI	GATC	1 cut(s)	8
BstMAI	GTCTC	3 cut(s)	77, 171, 407
BstMBI	GATC	1 cut(s)	5
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 364, 501, 641
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	2 cut(s)	420, 651
BstSCI	CCNGG	2 cut(s)	57, 488
BstSFI	CTRYAG	1 cut(s)	87
BstUI	CGCG	2 cut(s)	187, 189
BstV1I	GCAGC	2 cut(s)	162, 178
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	3 cut(s)	206, 549, 620
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	359, 394
Cac8I	GCNNGC	4 cut(s)	132, 187, 189, 312
CfoI	GCGC	5 cut(s)	187, 189, 191, 495, 612
Cfr13I	GGNCC	2 cut(s)	14, 547
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	4 cut(s)	35, 208, 417, 648
CviJI	RGCY	8 cut(s)	153, 206, 262, 287, 326, 549, 620, 644
CviKI_1	RGCY	8 cut(s)	153, 206, 262, 287, 326, 549, 620, 644
DdeI	CTNAG	6 cut(s)	69, 101, 237, 363, 384, 603
DpnI	GATC	1 cut(s)	7
DpnII	GATC	1 cut(s)	5
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	14
Eco81I	CCTNAGG	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	402
EcoNI	CCTNNNNNAGG	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	4 cut(s)	38, 211, 420, 651
FaiI	YATR	8 cut(s)	36, 89, 209, 259, 418, 465, 510, 649
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	4 cut(s)	34, 207, 416, 647
FauI	CCCGC	1 cut(s)	35
FblI	GTMKAC	1 cut(s)	513
Fnu4HI	GCNGC	4 cut(s)	151, 192, 308, 642
FokI	GGATG	2 cut(s)	366, 401
Fsp4HI	GCNGC	4 cut(s)	151, 192, 308, 642
GlaI	GCGC	5 cut(s)	186, 188, 190, 494, 611
GluI	GCNGC	4 cut(s)	151, 192, 308, 642
HaeII	RGCGCY	1 cut(s)	496
HaeIII	GGCC	3 cut(s)	206, 549, 620
HapII	CCGG	1 cut(s)	489
HhaI	GCGC	5 cut(s)	187, 189, 191, 495, 612
Hin1II	CATG	4 cut(s)	38, 211, 420, 651
Hin6I	GCGC	5 cut(s)	185, 187, 189, 493, 610
HinP1I	GCGC	5 cut(s)	185, 187, 189, 493, 610
HinfI	GANTC	4 cut(s)	73, 212, 233, 588
HpaII	CCGG	1 cut(s)	489
Hpy166II	GTNNAC	2 cut(s)	514, 568
Hpy188I	TCNGA	4 cut(s)	10, 102, 481, 606
Hpy188III	TCNNGA	5 cut(s)	49, 164, 341, 402, 585
Hpy8I	GTNNAC	2 cut(s)	514, 568
HpyAV	CCTTC	2 cut(s)	5, 451
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	3 cut(s)	504, 536, 641
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 364, 501, 641
HpyF3I	CTNAG	6 cut(s)	69, 101, 237, 363, 384, 603
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	4 cut(s)	38, 211, 420, 651
HspAI	GCGC	5 cut(s)	185, 187, 189, 493, 610
Kzo9I	GATC	1 cut(s)	5
LpnPI	CCDG	9 cut(s)	44, 71, 120, 144, 159, 354, 396, 502, 598
Lsp1109I	GCAGC	2 cut(s)	162, 178
LweI	GCATC	2 cut(s)	475, 597
MaeII	ACGT	1 cut(s)	570
MalI	GATC	1 cut(s)	7
MbiI	CCGCTC	2 cut(s)	42, 307
MboI	GATC	1 cut(s)	5
MboII	GAAGA	5 cut(s)	130, 463, 466, 551, 608
MluCI	AATT	1 cut(s)	505
MseI	TTAA	3 cut(s)	141, 441, 652
MspA1I	CMGCKG	2 cut(s)	153, 336
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	2 cut(s)	59, 490
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	2 cut(s)	187, 189
MwoI	GCNNNNNNNGC	4 cut(s)	191, 364, 501, 641
NciI	CCSGG	1 cut(s)	490
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	38, 211, 420, 651
NspI	RCATGY	2 cut(s)	420, 651
PaeR7I	CTCGAG	1 cut(s)	402
PauI	GCGCGC	2 cut(s)	185, 187
PciI	ACATGT	2 cut(s)	416, 647
PfeI	GAWTC	4 cut(s)	73, 212, 233, 588
PkrI	GCNGC	4 cut(s)	152, 193, 309, 643
PscI	ACATGT	2 cut(s)	416, 647
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	14, 547
PteI	GCGCGC	2 cut(s)	185, 187
PvuII	CAGCTG	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	141, 441, 652
SatI	GCNGC	4 cut(s)	151, 192, 308, 642
Sau3AI	GATC	1 cut(s)	5
Sau96I	GGNCC	2 cut(s)	14, 547
ScrFI	CCNGG	2 cut(s)	59, 490
SetI	ASST	4 cut(s)	155, 364, 573, 646
SfaNI	GCATC	2 cut(s)	475, 597
SfcI	CTRYAG	1 cut(s)	87
Sfr274I	CTCGAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	14
SlaI	CTCGAG	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	402, 440
SmoI	CTYRAG	2 cut(s)	402, 440
Sse9I	AATT	1 cut(s)	505
SsiI	CCGC	3 cut(s)	42, 307, 334
StyD4I	CCNGG	2 cut(s)	57, 488
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	2 cut(s)	403, 425
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	1 cut(s)	505
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	4 cut(s)	73, 212, 233, 588
Tru1I	TTAA	3 cut(s)	141, 441, 652
Tru9I	TTAA	3 cut(s)	141, 441, 652
TseI	GCWGC	3 cut(s)	150, 191, 641
TspDTI	ATGAA	4 cut(s)	23, 261, 336, 609
TspGWI	ACGGA	1 cut(s)	518
Vha464I	CTTAAG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	14
XagI	CCTNNNNNAGG	1 cut(s)	629
XceI	RCATGY	2 cut(s)	420, 651
XhoI	CTCGAG	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.