Rh4AG388400

Pyroglutamyl peptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0010303
Physical Location & Seq
Reverse (-)
69532378 .. 69538242
5865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG388400.1

Sequence Viewer

Length: 921 bp
ATGAGCGCGATTGTGGTTAAGCCTCAATCTAAATTCAATTTTCGCTCAGCAGTCTTGTGTTGGATCGCGCAATCTGTAAATTTTCTGCGAAAATCCATACTCGAAGGTTCTTGTGACAGCAAAGTAGAGACCAACCTCATTACCTCAGCTTTACTCTCTCTCGGTTTCTCCAACGTTTTCATTCTTCAAAGTCCACACCCAGTTGTGACCTCCGTCCTCAGTTTCAAGATTGGGAACTGTATTCAAGTGGAGAATCAGAACGAGGAAATGGGATCAGAAGGGCCAAAGAGTGTGGTGATTAATGTGACTGGATTCAAGAAGTTTCAAGGGGTGGCTGAGAATCCAACAGAGATTATAGTGAACAATCTAAAGACCTATGTGGAGAAGAGAGGGTTGCCTTCTGGTCTGACACTTGGTAGCTGCACCATTCTTGAGACTGCTGGAGTTGGTGCCAGTCCAGCTCTCTACAAGGCCATGGAGTCGGGGATTTCGAAAACGGACTCTAACACCAATGATCAAGTTGTCTGGCTTCATTTGGGGGTGAATAGTGGGGCTATGAAATTTGCTATTGAGCGGCAAGCTGTAAATGAGGCCACCTTTCGGTGTCCGGATGAGTTTGGATGGCAACCTCAGCAATTTCCAATAATTGAAGCAGATGGGGAAATTTCTCGAGCAAGAGAGACTTCTTGCTCAATTGATGCAATCCTTAAGATCTTGAAGAAGAAGGGATTCGATGTGGCGGTATCAGATGATGCGGGACGCTTTGTGTGCAATTACGTCTACTACCATTCTCTCCGGTTTGCAGAAGAAAAGGGTCACAAGTCTCTATTTGTCCATGTTCCTCTCTTTTCAAGAATTGATGAAGAAACTCAGATGCGCTTTGTGGCGTCTCTTCTGGAGGCTCTTGCTGCAACATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C15

Protein Analysis

306

Amino Acids

33.56

Weight (kDa)

6.25

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C15 PF01470 100 - 283 2.5e-18 Pyroglutamyl peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AccBSI CCGCTC 1 cut(s) 574
AccI GTMKAC 1 cut(s) 780
AccII CGCG 2 cut(s) 8, 68
AccIII TCCGGA 1 cut(s) 607
AciI CCGC 3 cut(s) 574, 740, 755
AclI AACGTT 1 cut(s) 174
AclWI GGATC 2 cut(s) 71, 280
AcsI RAATTY 4 cut(s) 32, 79, 560, 663
AcyI GRCGYC 1 cut(s) 887
AfiI CCNNNNNNNGG 1 cut(s) 600
AflII CTTAAG 1 cut(s) 707
AgsI TTSAA 9 cut(s) 37, 188, 226, 245, 316, 326, 650, 718, 852
AluBI AGCT 4 cut(s) 149, 420, 461, 581
AluI AGCT 4 cut(s) 149, 420, 461, 581
Alw26I GTCTC 5 cut(s) 122, 428, 674, 828, 894
AlwI GGATC 2 cut(s) 71, 280
Ama87I CYCGRG 1 cut(s) 669
Aor13HI TCCGGA 1 cut(s) 607
AoxI GGCC 3 cut(s) 281, 471, 591
ApeKI GCWGC 2 cut(s) 420, 908
ApoI RAATTY 4 cut(s) 32, 79, 560, 663
AseI ATTAAT 1 cut(s) 300
Asp700I GAANNNNTTC 1 cut(s) 728
AspLEI GCGC 3 cut(s) 8, 70, 879
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 2 cut(s) 307, 553
AsuII TTCGAA 1 cut(s) 491
AvaI CYCGRG 1 cut(s) 669
BanI GGYRCC 1 cut(s) 449
BbvCI CCTCAGC 2 cut(s) 145, 630
BbvI GCAGC 2 cut(s) 407, 895
BccI CCATC 2 cut(s) 615, 650
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 5 cut(s) 122, 428, 674, 828, 894
BfrI CTTAAG 1 cut(s) 707
BglII AGATCT 1 cut(s) 711
BisI GCNGC 3 cut(s) 421, 575, 909
BlpI GCTNAGC 1 cut(s) 46
BlsI GCNGC 3 cut(s) 422, 576, 910
BmeT110I CYCGRG 1 cut(s) 669
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 451
BmrI ACTGGG 1 cut(s) 194
BmsI GCATC 3 cut(s) 688, 742, 864
BmuI ACTGGG 1 cut(s) 194
BoxI GACNNNNGTC 1 cut(s) 212
BpmI CTGGAG 2 cut(s) 462, 917
Bpu10I CCTNAGC 2 cut(s) 145, 630
Bpu1102I GCTNAGC 1 cut(s) 46
Bpu14I TTCGAA 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 452
BsaHI GRCGYC 1 cut(s) 887
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 474
BsaWI WCCGGW 2 cut(s) 607, 795
Bsc4I CCNNNNNNNGG 1 cut(s) 600
Bse1I ACTGG 3 cut(s) 200, 313, 453
BseAI TCCGGA 1 cut(s) 607
BseDI CCNNGG 1 cut(s) 474
BseGI GGATG 2 cut(s) 616, 626
BseLI CCNNNNNNNGG 1 cut(s) 600
BseMII CTCAG 6 cut(s) 60, 159, 232, 327, 644, 884
BseNI ACTGG 3 cut(s) 200, 313, 453
BseXI GCAGC 2 cut(s) 407, 895
BsgI GTGCAG 1 cut(s) 406
Bsh1236I CGCG 2 cut(s) 8, 68
BshFI GGCC 3 cut(s) 283, 473, 593
BshNI GGYRCC 1 cut(s) 449
BsiHKCI CYCGRG 1 cut(s) 669
BsiSI CCGG 2 cut(s) 608, 796
BslFI GGGAC 1 cut(s) 771
BslI CCNNNNNNNGG 1 cut(s) 600
BsmAI GTCTC 5 cut(s) 122, 428, 674, 828, 894
BsmBI CGTCTC 1 cut(s) 894
BsmFI GGGAC 1 cut(s) 771
BsnI GGCC 3 cut(s) 283, 473, 593
Bso31I GGTCTC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 669
Bsp119I TTCGAA 1 cut(s) 491
Bsp13I TCCGGA 1 cut(s) 607
Bsp143I GATC 4 cut(s) 63, 272, 514, 711
Bsp1720I GCTNAGC 1 cut(s) 46
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 3 cut(s) 574, 740, 755
BspANI GGCC 3 cut(s) 283, 473, 593
BspCNI CTCAG 6 cut(s) 59, 158, 231, 328, 643, 883
BspEI TCCGGA 1 cut(s) 607
BspFNI CGCG 2 cut(s) 8, 68
BspLI GGNNCC 1 cut(s) 451
BspPI GGATC 2 cut(s) 71, 280
BspT104I TTCGAA 1 cut(s) 491
BspT107I GGYRCC 1 cut(s) 449
BspTI CTTAAG 1 cut(s) 707
BspTNI GGTCTC 1 cut(s) 122
BsrBI CCGCTC 1 cut(s) 574
BsrI ACTGG 3 cut(s) 200, 313, 453
BssECI CCNNGG 1 cut(s) 474
BssMI GATC 4 cut(s) 63, 272, 514, 711
BssNI GRCGYC 1 cut(s) 887
BssT1I CCWWGG 1 cut(s) 474
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 2 cut(s) 380, 897
BstACI GRCGYC 1 cut(s) 887
BstAFI CTTAAG 1 cut(s) 707
BstBI TTCGAA 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 579
BstDEI CTNAG 6 cut(s) 46, 145, 218, 336, 630, 870
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 2 cut(s) 616, 626
BstFNI CGCG 2 cut(s) 8, 68
BstHHI GCGC 3 cut(s) 8, 70, 879
BstKTI GATC 4 cut(s) 66, 275, 517, 714
BstMAI GTCTC 5 cut(s) 122, 428, 674, 828, 894
BstMBI GATC 4 cut(s) 63, 272, 514, 711
BstMWI GCNNNNNNNGC 4 cut(s) 458, 631, 768, 908
BstNSI RCATGY 1 cut(s) 918
BstPAI GACNNNNGTC 1 cut(s) 212
BstUI CGCG 2 cut(s) 8, 68
BstV1I GCAGC 2 cut(s) 407, 895
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuRI GGCC 3 cut(s) 283, 473, 593
BtgI CCRYGG 1 cut(s) 474
BtsCI GGATG 2 cut(s) 616, 626
Cac8I GCNNGC 1 cut(s) 579
CfoI GCGC 3 cut(s) 8, 70, 879
Cfr13I GGNCC 1 cut(s) 281
CseI GACGC 2 cut(s) 768, 876
CspCI CAANNNNNGTGG 2 cut(s) 273, 308
CviAII CATG 3 cut(s) 475, 836, 915
DdeI CTNAG 6 cut(s) 46, 145, 218, 336, 630, 870
DpnI GATC 4 cut(s) 65, 274, 516, 713
DpnII GATC 4 cut(s) 63, 272, 514, 711
Eam1104I CTCTTC 2 cut(s) 380, 897
EarI CTCTTC 2 cut(s) 380, 897
Eco130I CCWWGG 1 cut(s) 474
Eco31I GGTCTC 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 669
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
Esp3I CGTCTC 1 cut(s) 894
FaeI CATG 3 cut(s) 478, 839, 918
FaiI YATR 7 cut(s) 98, 356, 378, 476, 557, 837, 916
FalI AAGNNNNNCTT 2 cut(s) 667, 699
FaqI GGGAC 1 cut(s) 771
FatI CATG 3 cut(s) 474, 835, 914
FauI CCCGC 1 cut(s) 748
FbaI TGATCA 1 cut(s) 514
FblI GTMKAC 1 cut(s) 780
Fnu4HI GCNGC 3 cut(s) 421, 575, 909
FokI GGATG 2 cut(s) 623, 633
Fsp4HI GCNGC 3 cut(s) 421, 575, 909
GlaI GCGC 3 cut(s) 7, 69, 878
GluI GCNGC 3 cut(s) 421, 575, 909
GsuI CTGGAG 2 cut(s) 462, 917
HaeIII GGCC 3 cut(s) 283, 473, 593
HapII CCGG 2 cut(s) 608, 796
HgaI GACGC 2 cut(s) 768, 876
HhaI GCGC 3 cut(s) 8, 70, 879
Hin1I GRCGYC 1 cut(s) 887
Hin1II CATG 3 cut(s) 478, 839, 918
Hin6I GCGC 3 cut(s) 6, 68, 877
HinP1I GCGC 3 cut(s) 6, 68, 877
HinfI GANTC 6 cut(s) 253, 312, 340, 479, 500, 729
HpaII CCGG 2 cut(s) 608, 796
HphI GGTGA 2 cut(s) 307, 553
Hpy166II GTNNAC 3 cut(s) 194, 361, 781
Hpy188I TCNGA 5 cut(s) 258, 277, 408, 748, 873
Hpy188III TCNNGA 8 cut(s) 226, 316, 431, 608, 669, 715, 852, 896
Hpy8I GTNNAC 3 cut(s) 194, 361, 781
HpyAV CCTTC 4 cut(s) 98, 272, 408, 718
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 2 cut(s) 174, 777
HpyCH4V TGCA 5 cut(s) 423, 701, 771, 803, 911
HpyF10VI GCNNNNNNNGC 4 cut(s) 458, 631, 768, 908
HpyF3I CTNAG 6 cut(s) 46, 145, 218, 336, 630, 870
HpySE526I ACGT 2 cut(s) 174, 777
Hsp92I GRCGYC 1 cut(s) 887
Hsp92II CATG 3 cut(s) 478, 839, 918
HspAI GCGC 3 cut(s) 6, 68, 877
Kpn2I TCCGGA 1 cut(s) 607
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 4 cut(s) 63, 272, 514, 711
Lsp1109I GCAGC 2 cut(s) 407, 895
LweI GCATC 3 cut(s) 688, 742, 864
MaeII ACGT 2 cut(s) 174, 777
MaeIII GTNAC 4 cut(s) 113, 205, 304, 815
MalI GATC 4 cut(s) 65, 274, 516, 713
MbiI CCGCTC 1 cut(s) 574
MboI GATC 4 cut(s) 63, 272, 514, 711
MboII GAAGA 7 cut(s) 176, 397, 730, 733, 818, 875, 884
MfeI CAATTG 1 cut(s) 693
MflI RGATCY 1 cut(s) 711
MlyI GAGTC 2 cut(s) 488, 494
MmeI TCCRAC 3 cut(s) 41, 195, 368
MroI TCCGGA 1 cut(s) 607
MroXI GAANNNNTTC 1 cut(s) 728
MseI TTAA 3 cut(s) 18, 300, 708
MspCI CTTAAG 1 cut(s) 707
MspI CCGG 2 cut(s) 608, 796
MunI CAATTG 1 cut(s) 693
MvnI CGCG 2 cut(s) 8, 68
MwoI GCNNNNNNNGC 4 cut(s) 458, 631, 768, 908
NcoI CCATGG 1 cut(s) 474
NdeII GATC 4 cut(s) 63, 272, 514, 711
NlaIII CATG 3 cut(s) 478, 839, 918
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 4 cut(s) 113, 205, 304, 815
NspI RCATGY 1 cut(s) 918
NspV TTCGAA 1 cut(s) 491
PaeR7I CTCGAG 1 cut(s) 669
PcsI WCGNNNNNNNCGW 1 cut(s) 488
PdmI GAANNNNTTC 1 cut(s) 728
PfeI GAWTC 4 cut(s) 253, 312, 340, 729
PkrI GCNGC 3 cut(s) 422, 576, 910
PleI GAGTC 2 cut(s) 487, 494
PpsI GAGTC 2 cut(s) 487, 494
PshAI GACNNNNGTC 1 cut(s) 212
PshBI ATTAAT 1 cut(s) 300
Psp1406I AACGTT 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 1 cut(s) 281
PsuI RGATCY 1 cut(s) 711
SaqAI TTAA 3 cut(s) 18, 300, 708
SatI GCNGC 3 cut(s) 421, 575, 909
Sau3AI GATC 4 cut(s) 63, 272, 514, 711
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 2 cut(s) 488, 494
SfaNI GCATC 3 cut(s) 688, 742, 864
Sfr274I CTCGAG 1 cut(s) 669
SfuI TTCGAA 1 cut(s) 491
SlaI CTCGAG 1 cut(s) 669
SmlI CTYRAG 3 cut(s) 431, 669, 707
SmoI CTYRAG 3 cut(s) 431, 669, 707
SsiI CCGC 3 cut(s) 574, 740, 755
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 2 cut(s) 177, 780
TaqI TCGA 4 cut(s) 102, 491, 670, 732
TauI GCSGC 1 cut(s) 577
TfiI GAWTC 4 cut(s) 253, 312, 340, 729
Tru1I TTAA 3 cut(s) 18, 300, 708
Tru9I TTAA 3 cut(s) 18, 300, 708
TseFI GTSAC 4 cut(s) 113, 205, 304, 815
TseI GCWGC 2 cut(s) 420, 908
Tsp45I GTSAC 4 cut(s) 113, 205, 304, 815
TspDTI ATGAA 4 cut(s) 169, 521, 572, 876
TspGWI ACGGA 2 cut(s) 202, 512
Vha464I CTTAAG 1 cut(s) 707
VspI ATTAAT 1 cut(s) 300
XapI RAATTY 4 cut(s) 32, 79, 560, 663
XceI RCATGY 1 cut(s) 918
XhoI CTCGAG 1 cut(s) 669
XmiI GTMKAC 1 cut(s) 780
XmnI GAANNNNTTC 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.