RLG00000006059

Pyroglutamyl peptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010303
Physical Location & Seq
Forward (+)
3975610 .. 3978892
3283 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006059

Sequence Viewer

Length: 828 bp
ATGCACATCGCTCTCCCAGGGAGATTGGCCGCCTATCCTAAACTTACCAAAGTAGAGACCAACCTCCGCTTTACTCTCTCTCGGTTTCTCTTTCTCCAACGTTTTCATTCTTCAAAGTCCACACCCAGTTGTGACCTCCGTCCTCAGTTTCAAGTGGAGAATCAGAACGAGGAAATGGGATCAGAAGGGCCAAAGAGTGTGGTGATTAATGTGACTGGATTCAAGAAGTTTCAAGGGGTGGCTGAGAATCCAACAGAGATTATAGTGAACAATCTAAAGACCTATGTGGAGAAGAGAGGGTTGCCTTCTGGTCTGACACTTGGTAGCTGCACCATTCTTGAGACTGCTGGAGATGGTGCCAGTCCAGCTCTCTACAAGGCCATGGAGTCGGGGATTTCGAAAACGGACTCTAACACCAATGATCAAGTTGTCTGGCTTCACTTGGGGGTGAATAGTGGGGCTATGAAGTTTGCTATTGAGCGGCAAGCTGTAAATGAGGCCACCTTTCGGTGTCCGGATGAGTTTGGATGGCAACCTCAGCAATTCCCAATAATCGAAGCAGATGGGGAAATTTCTCGAGCAAGAGAGACTTGTTGCTCAATTGATGCAATCCTTAAGATCTTGAAGAAGAAGGGATTCGATGTGGCGGTATCAGATGATGCAGGACGCTTTGTGTGCAATTACGTCTACTATCATTCTCTCCGGTTTGCAGAAGACAAGGGTCACAAGTCTCTATTTGTCCATGTTCCTCTCTTTTCAAGAATTGATGAAGAAATTCAGATGTGCTTTGTGGCCTCTCTTCTGGAGGCTCTTGCTGCAACATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C15

Protein Analysis

276

Amino Acids

30.52

Weight (kDa)

6.32

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C15 PF01470 69 - 252 5.1e-18 Pyroglutamyl peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 356
AccBSI CCGCTC 1 cut(s) 481
AccI GTMKAC 1 cut(s) 687
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 4 cut(s) 30, 67, 481, 647
AclI AACGTT 1 cut(s) 100
AclWI GGATC 1 cut(s) 187
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 2 cut(s) 570, 774
AfiI CCNNNNNNNGG 1 cut(s) 507
AflII CTTAAG 1 cut(s) 614
AgsI TTSAA 6 cut(s) 114, 152, 223, 233, 625, 759
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 3 cut(s) 327, 368, 488
AluI AGCT 3 cut(s) 327, 368, 488
Alw26I GTCTC 4 cut(s) 50, 335, 581, 735
AlwI GGATC 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 576
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 5 cut(s) 27, 188, 378, 498, 792
ApeKI GCWGC 2 cut(s) 327, 815
ApoI RAATTY 2 cut(s) 570, 774
AseI ATTAAT 1 cut(s) 207
Asp700I GAANNNNTTC 2 cut(s) 635, 774
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 214, 460
AsuII TTCGAA 1 cut(s) 398
AvaI CYCGRG 1 cut(s) 576
BanI GGYRCC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 720
BbvCI CCTCAGC 1 cut(s) 537
BbvI GCAGC 2 cut(s) 314, 802
BccI CCATC 3 cut(s) 347, 522, 557
BciT130I CCWGG 1 cut(s) 18
BclI TGATCA 1 cut(s) 421
BcoDI GTCTC 4 cut(s) 50, 335, 581, 735
BfrI CTTAAG 1 cut(s) 614
BglII AGATCT 1 cut(s) 618
BisI GCNGC 4 cut(s) 30, 328, 482, 816
BlsI GCNGC 4 cut(s) 31, 329, 483, 817
Bme1390I CCNGG 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 576
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 595, 649
BmuI ACTGGG 1 cut(s) 120
BoxI GACNNNNGTC 2 cut(s) 138, 720
BpiI GAAGAC 1 cut(s) 720
BpmI CTGGAG 2 cut(s) 369, 824
Bpu10I CCTNAGC 1 cut(s) 537
Bpu14I TTCGAA 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 16, 17, 381
BsaWI WCCGGW 2 cut(s) 514, 702
Bsc4I CCNNNNNNNGG 1 cut(s) 507
Bse1I ACTGG 3 cut(s) 126, 220, 360
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 3 cut(s) 16, 17, 381
BseGI GGATG 2 cut(s) 523, 533
BseLI CCNNNNNNNGG 1 cut(s) 507
BseMII CTCAG 3 cut(s) 158, 234, 551
BseNI ACTGG 3 cut(s) 126, 220, 360
BseXI GCAGC 2 cut(s) 314, 802
BsgI GTGCAG 1 cut(s) 313
BshFI GGCC 5 cut(s) 29, 190, 380, 500, 794
BshNI GGYRCC 1 cut(s) 356
BsiHKCI CYCGRG 1 cut(s) 576
BsiSI CCGG 2 cut(s) 515, 703
BslI CCNNNNNNNGG 1 cut(s) 507
BsmAI GTCTC 4 cut(s) 50, 335, 581, 735
BsnI GGCC 5 cut(s) 29, 190, 380, 500, 794
Bso31I GGTCTC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 576
Bsp119I TTCGAA 1 cut(s) 398
Bsp13I TCCGGA 1 cut(s) 514
Bsp143I GATC 3 cut(s) 179, 421, 618
Bsp19I CCATGG 1 cut(s) 381
BspACI CCGC 4 cut(s) 30, 67, 481, 647
BspANI GGCC 5 cut(s) 29, 190, 380, 500, 794
BspCNI CTCAG 3 cut(s) 157, 235, 550
BspEI TCCGGA 1 cut(s) 514
BspLI GGNNCC 1 cut(s) 358
BspPI GGATC 1 cut(s) 187
BspT104I TTCGAA 1 cut(s) 398
BspT107I GGYRCC 1 cut(s) 356
BspTI CTTAAG 1 cut(s) 614
BspTNI GGTCTC 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 481
BsrI ACTGG 3 cut(s) 126, 220, 360
BssECI CCNNGG 3 cut(s) 16, 17, 381
BssMI GATC 3 cut(s) 179, 421, 618
BssT1I CCWWGG 1 cut(s) 381
Bst2UI CCWGG 1 cut(s) 18
Bst6I CTCTTC 2 cut(s) 287, 804
BstAFI CTTAAG 1 cut(s) 614
BstBI TTCGAA 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 3 cut(s) 144, 243, 537
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 2 cut(s) 523, 533
BstKTI GATC 3 cut(s) 182, 424, 621
BstMAI GTCTC 4 cut(s) 50, 335, 581, 735
BstMBI GATC 3 cut(s) 179, 421, 618
BstMWI GCNNNNNNNGC 4 cut(s) 365, 538, 675, 815
BstNI CCWGG 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 825
BstPAI GACNNNNGTC 2 cut(s) 138, 720
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 314, 802
BstV2I GAAGAC 1 cut(s) 720
BstX2I RGATCY 1 cut(s) 618
BstYI RGATCY 1 cut(s) 618
BsuRI GGCC 5 cut(s) 29, 190, 380, 500, 794
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 2 cut(s) 523, 533
Cac8I GCNNGC 1 cut(s) 486
Cfr13I GGNCC 1 cut(s) 188
CseI GACGC 1 cut(s) 675
CspCI CAANNNNNGTGG 2 cut(s) 180, 215
CviAII CATG 3 cut(s) 382, 743, 822
DdeI CTNAG 3 cut(s) 144, 243, 537
DpnI GATC 3 cut(s) 181, 423, 620
DpnII GATC 3 cut(s) 179, 421, 618
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 287, 804
EarI CTCTTC 2 cut(s) 287, 804
Eco130I CCWWGG 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 3 cut(s) 385, 746, 825
FaiI YATR 6 cut(s) 263, 285, 383, 464, 744, 823
FalI AAGNNNNNCTT 2 cut(s) 574, 606
FatI CATG 3 cut(s) 381, 742, 821
FbaI TGATCA 1 cut(s) 421
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 4 cut(s) 30, 328, 482, 816
FokI GGATG 2 cut(s) 530, 540
Fsp4HI GCNGC 4 cut(s) 30, 328, 482, 816
GluI GCNGC 4 cut(s) 30, 328, 482, 816
GsuI CTGGAG 2 cut(s) 369, 824
HaeIII GGCC 5 cut(s) 29, 190, 380, 500, 794
HapII CCGG 2 cut(s) 515, 703
HgaI GACGC 1 cut(s) 675
Hin1II CATG 3 cut(s) 385, 746, 825
HinfI GANTC 6 cut(s) 160, 219, 247, 386, 407, 636
HpaII CCGG 2 cut(s) 515, 703
HphI GGTGA 2 cut(s) 214, 460
Hpy166II GTNNAC 3 cut(s) 120, 268, 688
Hpy188I TCNGA 5 cut(s) 165, 184, 315, 655, 780
Hpy188III TCNNGA 7 cut(s) 223, 338, 515, 576, 622, 759, 803
Hpy8I GTNNAC 3 cut(s) 120, 268, 688
HpyAV CCTTC 3 cut(s) 179, 315, 625
HpyCH4IV ACGT 2 cut(s) 100, 684
HpyCH4V TGCA 7 cut(s) 4, 330, 608, 662, 678, 710, 818
HpyF10VI GCNNNNNNNGC 4 cut(s) 365, 538, 675, 815
HpyF3I CTNAG 3 cut(s) 144, 243, 537
HpySE526I ACGT 2 cut(s) 100, 684
Hsp92II CATG 3 cut(s) 385, 746, 825
Kpn2I TCCGGA 1 cut(s) 514
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 3 cut(s) 179, 421, 618
Lsp1109I GCAGC 2 cut(s) 314, 802
LweI GCATC 2 cut(s) 595, 649
MaeII ACGT 2 cut(s) 100, 684
MaeIII GTNAC 3 cut(s) 131, 211, 722
MalI GATC 3 cut(s) 181, 423, 620
MbiI CCGCTC 1 cut(s) 481
MboI GATC 3 cut(s) 179, 421, 618
MboII GAAGA 7 cut(s) 102, 304, 637, 640, 725, 782, 791
MfeI CAATTG 1 cut(s) 600
MflI RGATCY 1 cut(s) 618
MluCI AATT 6 cut(s) 542, 570, 600, 679, 762, 774
MlyI GAGTC 2 cut(s) 395, 401
MmeI TCCRAC 2 cut(s) 121, 275
MroI TCCGGA 1 cut(s) 514
MroXI GAANNNNTTC 2 cut(s) 635, 774
MseI TTAA 2 cut(s) 207, 615
MspCI CTTAAG 1 cut(s) 614
MspI CCGG 2 cut(s) 515, 703
MspR9I CCNGG 1 cut(s) 18
MunI CAATTG 1 cut(s) 600
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 4 cut(s) 365, 538, 675, 815
NcoI CCATGG 1 cut(s) 381
NdeII GATC 3 cut(s) 179, 421, 618
NlaIII CATG 3 cut(s) 385, 746, 825
NlaIV GGNNCC 1 cut(s) 358
NmuCI GTSAC 3 cut(s) 131, 211, 722
NspI RCATGY 1 cut(s) 825
NspV TTCGAA 1 cut(s) 398
PaeR7I CTCGAG 1 cut(s) 576
PasI CCCWGGG 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PdmI GAANNNNTTC 2 cut(s) 635, 774
PfeI GAWTC 4 cut(s) 160, 219, 247, 636
PkrI GCNGC 4 cut(s) 31, 329, 483, 817
PleI GAGTC 2 cut(s) 394, 401
PpsI GAGTC 2 cut(s) 394, 401
PshAI GACNNNNGTC 2 cut(s) 138, 720
PshBI ATTAAT 1 cut(s) 207
Psp1406I AACGTT 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 1 cut(s) 188
PsuI RGATCY 1 cut(s) 618
SaqAI TTAA 2 cut(s) 207, 615
SatI GCNGC 4 cut(s) 30, 328, 482, 816
Sau3AI GATC 3 cut(s) 179, 421, 618
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 2 cut(s) 395, 401
ScrFI CCNGG 1 cut(s) 18
SfaNI GCATC 2 cut(s) 595, 649
Sfr274I CTCGAG 1 cut(s) 576
SfuI TTCGAA 1 cut(s) 398
SlaI CTCGAG 1 cut(s) 576
SmlI CTYRAG 3 cut(s) 338, 576, 614
SmoI CTYRAG 3 cut(s) 338, 576, 614
Sse9I AATT 6 cut(s) 542, 570, 600, 679, 762, 774
SsiI CCGC 4 cut(s) 30, 67, 481, 647
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 381
TaiI ACGT 2 cut(s) 103, 687
TaqI TCGA 4 cut(s) 398, 555, 577, 639
TasI AATT 6 cut(s) 542, 570, 600, 679, 762, 774
TauI GCSGC 2 cut(s) 32, 484
TfiI GAWTC 4 cut(s) 160, 219, 247, 636
Tru1I TTAA 2 cut(s) 207, 615
Tru9I TTAA 2 cut(s) 207, 615
TseFI GTSAC 3 cut(s) 131, 211, 722
TseI GCWGC 2 cut(s) 327, 815
Tsp45I GTSAC 3 cut(s) 131, 211, 722
TspDTI ATGAA 3 cut(s) 95, 479, 783
TspGWI ACGGA 2 cut(s) 128, 419
Vha464I CTTAAG 1 cut(s) 614
VspI ATTAAT 1 cut(s) 207
XapI RAATTY 2 cut(s) 570, 774
XceI RCATGY 1 cut(s) 825
XhoI CTCGAG 1 cut(s) 576
XmiI GTMKAC 1 cut(s) 687
XmnI GAANNNNTTC 2 cut(s) 635, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.