Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008316.1

Orthogroup ID

OG0010303

Physical Location & Seq

Genomic Coordinates Reverse (-)

22167 .. 25475

Gene Structure 3309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008316.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atggaagaattgtttgagtccgggtcacagactttactttgtagcagtgttagcagtgtccctcctcctcgaggaactaatagacttctgcctgcatttgcgagtcttgcggtagtcgacttcttccaccgctatatgaatgtcattttcgtaattgattactacccaaatgggctatttaatttctttccttccagcaaagtagagaccaacctcattacctcagctttactctctctcggtttctccaacgttttcattcttcaaagtccacacccagttgtgacctccgtcctcagtttcaagattgggaactgtattcaagtggagaatcagaacgaggaaatgggatcagaagggccaaagagtgtggtgattaatgtgactggattcaagaagtttcaaggggtggctgagaatccaacagagattatagtgaacaatctaaagacctatgtggagaagagagggttggcttctggtctgacacttggtagctgcaccattcttgagactgccggagatggtgccagtccagctctctacaaggccatggagtcggggatttcgaaaacggactctaacaccaatgatcaagttgtctggcttcacttgggggtgaatagtggggctatgaaatttgctattgagcggcaagctgtaaatgaggccacctttcggtgtccggatgagtttggatggcaacctcagcaatttccaataattgaagcagatggggaaatttctcgagcaagagagacttcttgctcaattgatgcaatccttaagatcttgaagaagaagggattcgatgtggcggtatcagatgatgcgggacgctttgtgtgcaattacgtctactaccattctctccggtttgcagaagaaaagggtcacaagtctctatttgtccatgttcctctcttttcaagaattgatgaagaaactcagatgcgctttgtggcgtctcttctggaggctcttgctgcaacatgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C15

Protein Analysis

332

Amino Acids

36.51

Weight (kDa)

5.36

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23440 AT1G23440
fragaria_vesca	FvH4_4g32860 FvH4_4g32860
malus_domestica	MD13G1094400.v1.1
prunus_persica	Prupe.1G251000_v2.0.a1 Prupe.1G251000_v2.0.a1
pyrus_communis	pycom13g08220 pycom16g08150
rosa_chinensis	RchiOBHm_Chr4g0441871
rosa_laevigata	RLG00000006059
rosa_multiflora	Rmu_sc0008316.1_g000010
rosa_roxburghii	Rroxscaffold_5G00382690
rosa_rugosa	Rorug04G0336700 Rorug04G0336800 Rorug04G0336800
rosa_samantha	Rh4AG388400 Rh4BG402000 Rh4CG417100 Rh4DG395400
rosa_wichuraiana	Rw4G033530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	527
AccBSI	CCGCTC	1 cut(s)	652
AccI	GTMKAC	2 cut(s)	117, 858
AccIII	TCCGGA	1 cut(s)	685
AciI	CCGC	5 cut(s)	110, 130, 652, 818, 833
AclI	AACGTT	1 cut(s)	252
AclWI	GGATC	1 cut(s)	358
AcsI	RAATTY	2 cut(s)	638, 741
AcyI	GRCGYC	1 cut(s)	965
AfiI	CCNNNNNNNGG	2 cut(s)	71, 678
AflII	CTTAAG	1 cut(s)	785
AgsI	TTSAA	8 cut(s)	266, 304, 323, 394, 404, 728, 796, 930
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	4 cut(s)	227, 498, 539, 659
AluI	AGCT	4 cut(s)	227, 498, 539, 659
Alw26I	GTCTC	5 cut(s)	200, 506, 752, 906, 972
AlwI	GGATC	1 cut(s)	358
Ama87I	CYCGRG	2 cut(s)	69, 747
Aor13HI	TCCGGA	1 cut(s)	685
AoxI	GGCC	3 cut(s)	359, 549, 669
ApeKI	GCWGC	2 cut(s)	498, 986
ApoI	RAATTY	2 cut(s)	638, 741
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	806
AspLEI	GCGC	1 cut(s)	957
AspS9I	GGNCC	1 cut(s)	359
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	385, 631
AsuII	TTCGAA	1 cut(s)	569
AvaI	CYCGRG	2 cut(s)	69, 747
BanI	GGYRCC	1 cut(s)	527
BbvCI	CCTCAGC	2 cut(s)	223, 708
BbvI	GCAGC	2 cut(s)	485, 973
BccI	CCATC	3 cut(s)	518, 693, 728
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	5 cut(s)	200, 506, 752, 906, 972
BfrI	CTTAAG	1 cut(s)	785
BglII	AGATCT	1 cut(s)	789
BisI	GCNGC	3 cut(s)	499, 653, 987
BlsI	GCNGC	3 cut(s)	500, 654, 988
Bme1390I	CCNGG	1 cut(s)	22
BmeT110I	CYCGRG	2 cut(s)	69, 747
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	529
BmrFI	CCNGG	1 cut(s)	22
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	3 cut(s)	766, 820, 942
BmuI	ACTGGG	1 cut(s)	272
BoxI	GACNNNNGTC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	995
Bpu10I	CCTNAGC	2 cut(s)	223, 708
Bpu14I	TTCGAA	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	530
BpuMI	CCSGG	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	965
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	552
BsaWI	WCCGGW	2 cut(s)	685, 873
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 678
Bse1I	ACTGG	3 cut(s)	278, 391, 531
BseAI	TCCGGA	1 cut(s)	685
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	2 cut(s)	694, 704
BseLI	CCNNNNNNNGG	2 cut(s)	71, 678
BseMII	CTCAG	5 cut(s)	237, 310, 405, 722, 962
BseNI	ACTGG	3 cut(s)	278, 391, 531
BseRI	GAGGAG	2 cut(s)	54, 57
BseXI	GCAGC	2 cut(s)	485, 973
BsgI	GTGCAG	1 cut(s)	484
BshFI	GGCC	3 cut(s)	361, 551, 671
BshNI	GGYRCC	1 cut(s)	527
BsiHKCI	CYCGRG	2 cut(s)	69, 747
BsiSI	CCGG	4 cut(s)	21, 519, 686, 874
BslFI	GGGAC	2 cut(s)	44, 849
BslI	CCNNNNNNNGG	2 cut(s)	71, 678
BsmAI	GTCTC	5 cut(s)	200, 506, 752, 906, 972
BsmBI	CGTCTC	1 cut(s)	972
BsmFI	GGGAC	2 cut(s)	44, 849
BsnI	GGCC	3 cut(s)	361, 551, 671
Bso31I	GGTCTC	1 cut(s)	200
BsoBI	CYCGRG	2 cut(s)	69, 747
Bsp119I	TTCGAA	1 cut(s)	569
Bsp13I	TCCGGA	1 cut(s)	685
Bsp143I	GATC	3 cut(s)	350, 592, 789
Bsp19I	CCATGG	1 cut(s)	552
BspACI	CCGC	5 cut(s)	110, 130, 652, 818, 833
BspANI	GGCC	3 cut(s)	361, 551, 671
BspCNI	CTCAG	5 cut(s)	236, 309, 406, 721, 961
BspEI	TCCGGA	1 cut(s)	685
BspLI	GGNNCC	1 cut(s)	529
BspPI	GGATC	1 cut(s)	358
BspT104I	TTCGAA	1 cut(s)	569
BspT107I	GGYRCC	1 cut(s)	527
BspTI	CTTAAG	1 cut(s)	785
BspTNI	GGTCTC	1 cut(s)	200
BsrBI	CCGCTC	1 cut(s)	652
BsrI	ACTGG	3 cut(s)	278, 391, 531
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	3 cut(s)	350, 592, 789
BssNI	GRCGYC	1 cut(s)	965
BssT1I	CCWWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	2 cut(s)	458, 975
BstACI	GRCGYC	1 cut(s)	965
BstAFI	CTTAAG	1 cut(s)	785
BstBI	TTCGAA	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	93, 657
BstDEI	CTNAG	5 cut(s)	223, 296, 414, 708, 948
BstDSI	CCRYGG	1 cut(s)	552
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	694, 704
BstHHI	GCGC	1 cut(s)	957
BstKTI	GATC	3 cut(s)	353, 595, 792
BstMAI	GTCTC	5 cut(s)	200, 506, 752, 906, 972
BstMBI	GATC	3 cut(s)	350, 592, 789
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 107, 536, 709, 846, 986
BstNSI	RCATGY	1 cut(s)	996
BstPAI	GACNNNNGTC	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	485, 973
BstX2I	RGATCY	1 cut(s)	789
BstYI	RGATCY	1 cut(s)	789
BsuRI	GGCC	3 cut(s)	361, 551, 671
BtgI	CCRYGG	1 cut(s)	552
BtsCI	GGATG	2 cut(s)	694, 704
BtsI	GCAGTG	2 cut(s)	52, 61
BtsIMutI	CAGTG	2 cut(s)	52, 61
Cac8I	GCNNGC	2 cut(s)	93, 657
CfoI	GCGC	1 cut(s)	957
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	2 cut(s)	846, 954
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	3 cut(s)	553, 914, 993
DdeI	CTNAG	5 cut(s)	223, 296, 414, 708, 948
DpnI	GATC	3 cut(s)	352, 594, 791
DpnII	GATC	3 cut(s)	350, 592, 789
Eam1104I	CTCTTC	2 cut(s)	458, 975
EarI	CTCTTC	2 cut(s)	458, 975
Eco130I	CCWWGG	1 cut(s)	552
Eco31I	GGTCTC	1 cut(s)	200
Eco88I	CYCGRG	2 cut(s)	69, 747
EcoNI	CCTNNNNNAGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	552
Esp3I	CGTCTC	1 cut(s)	972
FaeI	CATG	3 cut(s)	556, 917, 996
FaiI	YATR	8 cut(s)	135, 137, 434, 456, 554, 635, 915, 994
FalI	AAGNNNNNCTT	2 cut(s)	745, 777
FaqI	GGGAC	2 cut(s)	44, 849
FatI	CATG	3 cut(s)	552, 913, 992
FauI	CCCGC	1 cut(s)	826
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	2 cut(s)	117, 858
Fnu4HI	GCNGC	3 cut(s)	499, 653, 987
FokI	GGATG	2 cut(s)	701, 711
Fsp4HI	GCNGC	3 cut(s)	499, 653, 987
GlaI	GCGC	1 cut(s)	956
GluI	GCNGC	3 cut(s)	499, 653, 987
GsuI	CTGGAG	1 cut(s)	995
HaeIII	GGCC	3 cut(s)	361, 551, 671
HapII	CCGG	4 cut(s)	21, 519, 686, 874
HgaI	GACGC	2 cut(s)	846, 954
HhaI	GCGC	1 cut(s)	957
Hin1I	GRCGYC	1 cut(s)	965
Hin1II	CATG	3 cut(s)	556, 917, 996
Hin6I	GCGC	1 cut(s)	955
HinP1I	GCGC	1 cut(s)	955
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	8 cut(s)	17, 103, 331, 390, 418, 557, 578, 807
HpaII	CCGG	4 cut(s)	21, 519, 686, 874
HphI	GGTGA	2 cut(s)	385, 631
Hpy166II	GTNNAC	4 cut(s)	118, 272, 439, 859
Hpy188I	TCNGA	5 cut(s)	336, 355, 486, 826, 951
Hpy188III	TCNNGA	8 cut(s)	304, 394, 509, 686, 747, 793, 930, 974
Hpy8I	GTNNAC	4 cut(s)	118, 272, 439, 859
HpyAV	CCTTC	3 cut(s)	201, 350, 796
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	2 cut(s)	252, 855
HpyCH4V	TGCA	6 cut(s)	95, 501, 779, 849, 881, 989
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 107, 536, 709, 846, 986
HpyF3I	CTNAG	5 cut(s)	223, 296, 414, 708, 948
HpySE526I	ACGT	2 cut(s)	252, 855
Hsp92I	GRCGYC	1 cut(s)	965
Hsp92II	CATG	3 cut(s)	556, 917, 996
HspAI	GCGC	1 cut(s)	955
Kpn2I	TCCGGA	1 cut(s)	685
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	3 cut(s)	350, 592, 789
Lsp1109I	GCAGC	2 cut(s)	485, 973
LweI	GCATC	3 cut(s)	766, 820, 942
MaeII	ACGT	2 cut(s)	252, 855
MaeIII	GTNAC	4 cut(s)	24, 283, 382, 893
MalI	GATC	3 cut(s)	352, 594, 791
MbiI	CCGCTC	1 cut(s)	652
MboI	GATC	3 cut(s)	350, 592, 789
MboII	GAAGA	9 cut(s)	17, 115, 254, 475, 808, 811, 896, 953, 962
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	1 cut(s)	789
MlyI	GAGTC	4 cut(s)	26, 112, 566, 572
MmeI	TCCRAC	2 cut(s)	273, 446
MroI	TCCGGA	1 cut(s)	685
MroXI	GAANNNNTTC	1 cut(s)	806
MseI	TTAA	3 cut(s)	180, 378, 786
MspCI	CTTAAG	1 cut(s)	785
MspI	CCGG	4 cut(s)	21, 519, 686, 874
MspR9I	CCNGG	1 cut(s)	22
MunI	CAATTG	1 cut(s)	771
MwoI	GCNNNNNNNGC	6 cut(s)	51, 107, 536, 709, 846, 986
NciI	CCSGG	1 cut(s)	22
NcoI	CCATGG	1 cut(s)	552
NdeII	GATC	3 cut(s)	350, 592, 789
NlaIII	CATG	3 cut(s)	556, 917, 996
NlaIV	GGNNCC	1 cut(s)	529
NmuCI	GTSAC	4 cut(s)	24, 283, 382, 893
NspI	RCATGY	1 cut(s)	996
NspV	TTCGAA	1 cut(s)	569
PaeR7I	CTCGAG	2 cut(s)	69, 747
PcsI	WCGNNNNNNNCGW	1 cut(s)	566
PdmI	GAANNNNTTC	1 cut(s)	806
PfeI	GAWTC	4 cut(s)	331, 390, 418, 807
PkrI	GCNGC	3 cut(s)	500, 654, 988
PleI	GAGTC	4 cut(s)	25, 111, 565, 572
PpsI	GAGTC	4 cut(s)	25, 111, 565, 572
PshAI	GACNNNNGTC	1 cut(s)	290
PshBI	ATTAAT	1 cut(s)	378
Psp1406I	AACGTT	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	529
PspPI	GGNCC	1 cut(s)	359
PspXI	VCTCGAGB	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	789
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	180, 378, 786
SatI	GCNGC	3 cut(s)	499, 653, 987
Sau3AI	GATC	3 cut(s)	350, 592, 789
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	4 cut(s)	26, 112, 566, 572
ScrFI	CCNGG	1 cut(s)	22
SfaNI	GCATC	3 cut(s)	766, 820, 942
Sfr274I	CTCGAG	2 cut(s)	69, 747
SfuI	TTCGAA	1 cut(s)	569
SlaI	CTCGAG	2 cut(s)	69, 747
SmlI	CTYRAG	4 cut(s)	69, 509, 747, 785
SmoI	CTYRAG	4 cut(s)	69, 509, 747, 785
SsiI	CCGC	5 cut(s)	110, 130, 652, 818, 833
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	2 cut(s)	255, 858
TaqI	TCGA	5 cut(s)	70, 117, 569, 748, 810
TauI	GCSGC	1 cut(s)	655
TfiI	GAWTC	4 cut(s)	331, 390, 418, 807
Tru1I	TTAA	3 cut(s)	180, 378, 786
Tru9I	TTAA	3 cut(s)	180, 378, 786
TscAI	CASTG	2 cut(s)	52, 61
TseFI	GTSAC	4 cut(s)	24, 283, 382, 893
TseI	GCWGC	2 cut(s)	498, 986
Tsp45I	GTSAC	4 cut(s)	24, 283, 382, 893
TspDTI	ATGAA	4 cut(s)	152, 247, 650, 954
TspGWI	ACGGA	2 cut(s)	280, 590
TspRI	CASTG	2 cut(s)	52, 61
Vha464I	CTTAAG	1 cut(s)	785
VspI	ATTAAT	1 cut(s)	378
XagI	CCTNNNNNAGG	1 cut(s)	69
XapI	RAATTY	2 cut(s)	638, 741
XceI	RCATGY	1 cut(s)	996
XhoI	CTCGAG	2 cut(s)	69, 747
XmiI	GTMKAC	2 cut(s)	117, 858
XmnI	GAANNNNTTC	1 cut(s)	806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.