RchiOBHm_Chr4g0441871

Pyroglutamyl peptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010303
Physical Location & Seq
Reverse (-)
63657980 .. 63661210
3231 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40966

Sequence Viewer

Length: 864 bp
ATGAATGTCATTTTCGTAATTGATTACTACCCAAATGGGCTATTTAATTACTTTCCTTCCAGCAAAGTAGAGACCAACCTCATTACCTCAGCTTTACTCTCTCTCGGTTTCTCCAACGTTTTCATTCTTCAAAGTCCACACCCAGTTGTGACCTCCGTCCTCAGTTTCAAGATTGGGAACTGTATTCAAGTGGAGAATCAGAACGAGGAAATGGGATCAGAAGGGCCAAAGAGTGTGGTGATTAATGTGACTGGATTCAAGAAGTTTCAAGGGGTGGCTGAGAATCCAACAGAGATTATAGTGAACAATCTAAAGACCTATGTGGAGAAGAGAGGGTTGCCTTCTGGTCTGACACTTGGTAGCTGCACCATTCTTGAGACTGCTGGAGTTGGTGCCAGTCCAGCTCTCTACAAGGCCATGGAGTCGGGGATTTCGAAAACGGACTCTAACACCAATGATCAAGTTGTCTGGCTTCATTTGGGGGTGAATAGTGGGGCTATGAAATTTGCTATTGAGCGGCAAGCTGTAAATGAGGCCACCTTTCGGTGTCCGGATGAGTTTGGATGGCAACCTCAGCAATTTCCAATAATTGAAGCAGATGGGGAAATTTCTCGAGCAAGAGAGACTTCTTGCTCAATTGATGCAATCCTTAAGATCTTGAAGAAGAAGGGATTCGATGTGGCGGTATCAGATGATGCGGGACGCTTTGTGTGCAATTACGTCTACTACCATTCTCTCCGGTTTGCAGAAGAAAAGGGTCACAAGTCTCTATTTGTCCATGTTCCTCTCTTTTCAAGAATTGATGAAGAAACTCAGATGCGCTTTGTGGCGTCTCTTCTGGAGGCTCTTGCTGCAACATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C15

Protein Analysis

287

Amino Acids

31.6

Weight (kDa)

5.47

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C15 PF01470 81 - 264 2.1e-18 Pyroglutamyl peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 392
AccBSI CCGCTC 1 cut(s) 517
AccI GTMKAC 1 cut(s) 723
AccIII TCCGGA 1 cut(s) 550
AciI CCGC 3 cut(s) 517, 683, 698
AclI AACGTT 1 cut(s) 117
AclWI GGATC 1 cut(s) 223
AcsI RAATTY 2 cut(s) 503, 606
AcyI GRCGYC 1 cut(s) 830
AfiI CCNNNNNNNGG 1 cut(s) 543
AflII CTTAAG 1 cut(s) 650
AgsI TTSAA 8 cut(s) 131, 169, 188, 259, 269, 593, 661, 795
AluBI AGCT 4 cut(s) 92, 363, 404, 524
AluI AGCT 4 cut(s) 92, 363, 404, 524
Alw26I GTCTC 5 cut(s) 65, 371, 617, 771, 837
AlwI GGATC 1 cut(s) 223
Ama87I CYCGRG 1 cut(s) 612
Aor13HI TCCGGA 1 cut(s) 550
AoxI GGCC 3 cut(s) 224, 414, 534
ApeKI GCWGC 2 cut(s) 363, 851
ApoI RAATTY 2 cut(s) 503, 606
AseI ATTAAT 1 cut(s) 243
Asp700I GAANNNNTTC 1 cut(s) 671
AspLEI GCGC 1 cut(s) 822
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 250, 496
AsuII TTCGAA 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 612
BanI GGYRCC 1 cut(s) 392
BbvCI CCTCAGC 2 cut(s) 88, 573
BbvI GCAGC 2 cut(s) 350, 838
BccI CCATC 2 cut(s) 558, 593
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 5 cut(s) 65, 371, 617, 771, 837
BfrI CTTAAG 1 cut(s) 650
BglII AGATCT 1 cut(s) 654
BisI GCNGC 3 cut(s) 364, 518, 852
BlsI GCNGC 3 cut(s) 365, 519, 853
BmeT110I CYCGRG 1 cut(s) 612
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 394
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 3 cut(s) 631, 685, 807
BmuI ACTGGG 1 cut(s) 137
BoxI GACNNNNGTC 1 cut(s) 155
BpmI CTGGAG 2 cut(s) 405, 860
Bpu10I CCTNAGC 2 cut(s) 88, 573
Bpu14I TTCGAA 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 395
BsaHI GRCGYC 1 cut(s) 830
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 417
BsaWI WCCGGW 2 cut(s) 550, 738
Bsc4I CCNNNNNNNGG 1 cut(s) 543
Bse1I ACTGG 3 cut(s) 143, 256, 396
BseAI TCCGGA 1 cut(s) 550
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 2 cut(s) 559, 569
BseLI CCNNNNNNNGG 1 cut(s) 543
BseMII CTCAG 5 cut(s) 102, 175, 270, 587, 827
BseNI ACTGG 3 cut(s) 143, 256, 396
BseXI GCAGC 2 cut(s) 350, 838
BsgI GTGCAG 1 cut(s) 349
BshFI GGCC 3 cut(s) 226, 416, 536
BshNI GGYRCC 1 cut(s) 392
BsiHKCI CYCGRG 1 cut(s) 612
BsiSI CCGG 2 cut(s) 551, 739
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 1 cut(s) 543
BsmAI GTCTC 5 cut(s) 65, 371, 617, 771, 837
BsmBI CGTCTC 1 cut(s) 837
BsmFI GGGAC 1 cut(s) 714
BsnI GGCC 3 cut(s) 226, 416, 536
Bso31I GGTCTC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 612
Bsp119I TTCGAA 1 cut(s) 434
Bsp13I TCCGGA 1 cut(s) 550
Bsp143I GATC 3 cut(s) 215, 457, 654
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 3 cut(s) 517, 683, 698
BspANI GGCC 3 cut(s) 226, 416, 536
BspCNI CTCAG 5 cut(s) 101, 174, 271, 586, 826
BspEI TCCGGA 1 cut(s) 550
BspLI GGNNCC 1 cut(s) 394
BspPI GGATC 1 cut(s) 223
BspT104I TTCGAA 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 392
BspTI CTTAAG 1 cut(s) 650
BspTNI GGTCTC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 517
BsrI ACTGG 3 cut(s) 143, 256, 396
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 3 cut(s) 215, 457, 654
BssNI GRCGYC 1 cut(s) 830
BssT1I CCWWGG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 182
Bst6I CTCTTC 2 cut(s) 323, 840
BstACI GRCGYC 1 cut(s) 830
BstAFI CTTAAG 1 cut(s) 650
BstBI TTCGAA 1 cut(s) 434
BstC8I GCNNGC 1 cut(s) 522
BstDEI CTNAG 5 cut(s) 88, 161, 279, 573, 813
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 2 cut(s) 559, 569
BstHHI GCGC 1 cut(s) 822
BstKTI GATC 3 cut(s) 218, 460, 657
BstMAI GTCTC 5 cut(s) 65, 371, 617, 771, 837
BstMBI GATC 3 cut(s) 215, 457, 654
BstMWI GCNNNNNNNGC 4 cut(s) 401, 574, 711, 851
BstNSI RCATGY 1 cut(s) 861
BstPAI GACNNNNGTC 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 350, 838
BstX2I RGATCY 1 cut(s) 654
BstYI RGATCY 1 cut(s) 654
BsuRI GGCC 3 cut(s) 226, 416, 536
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 2 cut(s) 559, 569
Cac8I GCNNGC 1 cut(s) 522
CfoI GCGC 1 cut(s) 822
Cfr13I GGNCC 1 cut(s) 224
CseI GACGC 2 cut(s) 711, 819
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 3 cut(s) 418, 779, 858
DdeI CTNAG 5 cut(s) 88, 161, 279, 573, 813
DpnI GATC 3 cut(s) 217, 459, 656
DpnII GATC 3 cut(s) 215, 457, 654
Eam1104I CTCTTC 2 cut(s) 323, 840
EarI CTCTTC 2 cut(s) 323, 840
Eco130I CCWWGG 1 cut(s) 417
Eco31I GGTCTC 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 612
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
Esp3I CGTCTC 1 cut(s) 837
FaeI CATG 3 cut(s) 421, 782, 861
FaiI YATR 6 cut(s) 299, 321, 419, 500, 780, 859
FalI AAGNNNNNCTT 2 cut(s) 610, 642
FaqI GGGAC 1 cut(s) 714
FatI CATG 3 cut(s) 417, 778, 857
FauI CCCGC 1 cut(s) 691
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 1 cut(s) 723
Fnu4HI GCNGC 3 cut(s) 364, 518, 852
FokI GGATG 2 cut(s) 566, 576
Fsp4HI GCNGC 3 cut(s) 364, 518, 852
GlaI GCGC 1 cut(s) 821
GluI GCNGC 3 cut(s) 364, 518, 852
GsuI CTGGAG 2 cut(s) 405, 860
HaeIII GGCC 3 cut(s) 226, 416, 536
HapII CCGG 2 cut(s) 551, 739
HgaI GACGC 2 cut(s) 711, 819
HhaI GCGC 1 cut(s) 822
Hin1I GRCGYC 1 cut(s) 830
Hin1II CATG 3 cut(s) 421, 782, 861
Hin6I GCGC 1 cut(s) 820
HinP1I GCGC 1 cut(s) 820
HinfI GANTC 6 cut(s) 196, 255, 283, 422, 443, 672
HpaII CCGG 2 cut(s) 551, 739
HphI GGTGA 2 cut(s) 250, 496
Hpy166II GTNNAC 3 cut(s) 137, 304, 724
Hpy188I TCNGA 5 cut(s) 201, 220, 351, 691, 816
Hpy188III TCNNGA 8 cut(s) 169, 259, 374, 551, 612, 658, 795, 839
Hpy8I GTNNAC 3 cut(s) 137, 304, 724
HpyAV CCTTC 4 cut(s) 66, 215, 351, 661
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4IV ACGT 2 cut(s) 117, 720
HpyCH4V TGCA 5 cut(s) 366, 644, 714, 746, 854
HpyF10VI GCNNNNNNNGC 4 cut(s) 401, 574, 711, 851
HpyF3I CTNAG 5 cut(s) 88, 161, 279, 573, 813
HpySE526I ACGT 2 cut(s) 117, 720
Hsp92I GRCGYC 1 cut(s) 830
Hsp92II CATG 3 cut(s) 421, 782, 861
HspAI GCGC 1 cut(s) 820
Kpn2I TCCGGA 1 cut(s) 550
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 3 cut(s) 215, 457, 654
Lsp1109I GCAGC 2 cut(s) 350, 838
LweI GCATC 3 cut(s) 631, 685, 807
MaeII ACGT 2 cut(s) 117, 720
MaeIII GTNAC 3 cut(s) 148, 247, 758
MalI GATC 3 cut(s) 217, 459, 656
MbiI CCGCTC 1 cut(s) 517
MboI GATC 3 cut(s) 215, 457, 654
MboII GAAGA 7 cut(s) 119, 340, 673, 676, 761, 818, 827
MfeI CAATTG 1 cut(s) 636
MflI RGATCY 1 cut(s) 654
MluCI AATT 9 cut(s) 18, 46, 503, 578, 588, 606, 636, 715, 798
MlyI GAGTC 2 cut(s) 431, 437
MmeI TCCRAC 2 cut(s) 138, 311
MroI TCCGGA 1 cut(s) 550
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 3 cut(s) 45, 243, 651
MspCI CTTAAG 1 cut(s) 650
MspI CCGG 2 cut(s) 551, 739
MunI CAATTG 1 cut(s) 636
MwoI GCNNNNNNNGC 4 cut(s) 401, 574, 711, 851
NcoI CCATGG 1 cut(s) 417
NdeII GATC 3 cut(s) 215, 457, 654
NlaIII CATG 3 cut(s) 421, 782, 861
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 3 cut(s) 148, 247, 758
NspI RCATGY 1 cut(s) 861
NspV TTCGAA 1 cut(s) 434
PaeR7I CTCGAG 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 431
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 4 cut(s) 196, 255, 283, 672
PkrI GCNGC 3 cut(s) 365, 519, 853
PleI GAGTC 2 cut(s) 430, 437
PpsI GAGTC 2 cut(s) 430, 437
PshAI GACNNNNGTC 1 cut(s) 155
PshBI ATTAAT 1 cut(s) 243
Psp1406I AACGTT 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 1 cut(s) 224
PsuI RGATCY 1 cut(s) 654
SaqAI TTAA 3 cut(s) 45, 243, 651
SatI GCNGC 3 cut(s) 364, 518, 852
Sau3AI GATC 3 cut(s) 215, 457, 654
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 2 cut(s) 431, 437
SfaNI GCATC 3 cut(s) 631, 685, 807
Sfr274I CTCGAG 1 cut(s) 612
SfuI TTCGAA 1 cut(s) 434
SlaI CTCGAG 1 cut(s) 612
SmlI CTYRAG 3 cut(s) 374, 612, 650
SmoI CTYRAG 3 cut(s) 374, 612, 650
Sse9I AATT 9 cut(s) 18, 46, 503, 578, 588, 606, 636, 715, 798
SsiI CCGC 3 cut(s) 517, 683, 698
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 1 cut(s) 182
TaiI ACGT 2 cut(s) 120, 723
TaqI TCGA 3 cut(s) 434, 613, 675
TasI AATT 9 cut(s) 18, 46, 503, 578, 588, 606, 636, 715, 798
TauI GCSGC 1 cut(s) 520
TfiI GAWTC 4 cut(s) 196, 255, 283, 672
Tru1I TTAA 3 cut(s) 45, 243, 651
Tru9I TTAA 3 cut(s) 45, 243, 651
TseFI GTSAC 3 cut(s) 148, 247, 758
TseI GCWGC 2 cut(s) 363, 851
Tsp45I GTSAC 3 cut(s) 148, 247, 758
TspDTI ATGAA 5 cut(s) 17, 112, 464, 515, 819
TspGWI ACGGA 2 cut(s) 145, 455
Vha464I CTTAAG 1 cut(s) 650
VspI ATTAAT 1 cut(s) 243
XapI RAATTY 2 cut(s) 503, 606
XceI RCATGY 1 cut(s) 861
XhoI CTCGAG 1 cut(s) 612
XmiI GTMKAC 1 cut(s) 723
XmnI GAANNNNTTC 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.