Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010303

Physical Location & Seq

Genomic Coordinates Forward (+)

26265117 .. 26269041

Gene Structure 3925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G251000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGATCAGAAGGACCGAAGAGTGTTGTCATTCATGTGAGTGGATTCAAGAAGTTCCAAGGCGTTGCTGAGAATCCCACAGAGACCATAGTTAAGAATATAAAAGGCTTCGTTGAGAAGAAAGAGTTGCCTGCTTGTCTTACTCTGGGCAGCTGCACTGTTCTTGAGACTGCAGGAGATGGCGCACGTCCTGCTCTTTACAAGACCATGGATTCCGGCGTTTCAACAACTGATTCTACCACCAATGAACAAGTCGTATGGCTTCACTTGGGGGTGAATAGTGGGGCTCTAAAATTTGCTATTGAGCGGCAAGCGATAAATGAAGCCACTTTCCGTTGTCCAGATGAGTTTGGATGGCAACCTCAGCAACTGCCAATAATCGCCGAGGATGGAGGAACTTCTCGAGCAAGAGAGGTACTTACTTCTTGCTCGACGGAGGCAATCCATAAGATCTTGAAGAAGAAAGGATATGATGTGGCAATATCAGATGATGCAGGGCGTTTCGTGTGCAATTATGTCTACTATCATTCCCTCCGTTTCGCTGAAGAAAAGGGTCACAAATCTCTATTTGTCCATGTTCCTCTCTTTTCAAGAGTTGACGAAGAAACTCAGATGCGCTTTGTGGCCTCCCTTTTGGAGGCGATTGCAGCAACATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C15

Protein Analysis

220

Amino Acids

23.98

Weight (kDa)

6.09

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23440 AT1G23440
fragaria_vesca	FvH4_4g32860 FvH4_4g32860
malus_domestica	MD13G1094400.v1.1
prunus_persica	Prupe.1G251000_v2.0.a1 Prupe.1G251000_v2.0.a1
pyrus_communis	pycom13g08220 pycom16g08150
rosa_chinensis	RchiOBHm_Chr4g0441871
rosa_laevigata	RLG00000006059
rosa_multiflora	Rmu_sc0008316.1_g000010
rosa_roxburghii	Rroxscaffold_5G00382690
rosa_rugosa	Rorug04G0336700 Rorug04G0336800 Rorug04G0336800
rosa_samantha	Rh4AG388400 Rh4BG402000 Rh4CG417100 Rh4DG395400
rosa_wichuraiana	Rw4G033530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	1 cut(s)	307
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	564
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	637
AflIII	ACRYGT	1 cut(s)	653
AgsI	TTSAA	4 cut(s)	49, 225, 457, 591
AjiI	CACGTC	1 cut(s)	188
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	77, 161
AlwI	GGATC	1 cut(s)	13
AlwNI	CAGNNNCTG	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	402
AoxI	GGCC	1 cut(s)	624
ApeKI	GCWGC	3 cut(s)	150, 153, 647
ApoI	RAATTY	1 cut(s)	293
AspLEI	GCGC	2 cut(s)	185, 618
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	286
AvaI	CYCGRG	1 cut(s)	402
AvaII	GGWCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	289
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	140, 162
BccI	CCATC	3 cut(s)	173, 348, 383
BcoDI	GTCTC	2 cut(s)	77, 161
BfmI	CTRYAG	1 cut(s)	171
BglII	AGATCT	1 cut(s)	450
BisI	GCNGC	4 cut(s)	151, 154, 308, 648
BlsI	GCNGC	4 cut(s)	152, 155, 309, 649
Bme18I	GGWCC	1 cut(s)	14
BmeT110I	CYCGRG	1 cut(s)	402
BmgBI	CACGTC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	14
BmsI	GCATC	2 cut(s)	481, 603
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	58, 207, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	637
BseDI	CCNNGG	3 cut(s)	58, 207, 384
BseGI	GGATG	2 cut(s)	359, 394
BseLI	CCNNNNNNNGG	1 cut(s)	637
BseMII	CTCAG	3 cut(s)	60, 377, 623
BseXI	GCAGC	2 cut(s)	140, 162
BsgI	GTGCAG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	626
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	637
BsmAI	GTCTC	2 cut(s)	77, 161
BsnI	GGCC	1 cut(s)	626
Bso31I	GGTCTC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	5, 450
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	1 cut(s)	307
BspANI	GGCC	1 cut(s)	626
BspCNI	CTCAG	3 cut(s)	61, 376, 622
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	307
BssECI	CCNNGG	3 cut(s)	58, 207, 384
BssMI	GATC	2 cut(s)	5, 450
BssT1I	CCWWGG	2 cut(s)	58, 207
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	132, 312
BstDEI	CTNAG	3 cut(s)	69, 363, 609
BstDSI	CCRYGG	1 cut(s)	207
BstENI	CCTNNNNNAGG	1 cut(s)	635
BstF5I	GGATG	2 cut(s)	359, 394
BstHHI	GCGC	2 cut(s)	185, 618
BstKTI	GATC	2 cut(s)	8, 453
BstMAI	GTCTC	2 cut(s)	77, 161
BstMBI	GATC	2 cut(s)	5, 450
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 364, 647
BstNSI	RCATGY	1 cut(s)	657
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	140, 162
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	626
BtgI	CCRYGG	1 cut(s)	207
BtrI	CACGTC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	359, 394
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	132, 312
CaiI	CAGNNNCTG	1 cut(s)	370
CfoI	GCGC	2 cut(s)	185, 618
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	4 cut(s)	35, 208, 575, 654
CviJI	RGCY	6 cut(s)	108, 153, 262, 287, 326, 626
CviKI_1	RGCY	6 cut(s)	108, 153, 262, 287, 326, 626
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	3 cut(s)	69, 363, 609
DpnI	GATC	2 cut(s)	7, 452
DpnII	GATC	2 cut(s)	5, 450
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	58, 207
Eco24I	GRGCYC	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	564
Eco88I	CYCGRG	1 cut(s)	402
EcoNI	CCTNNNNNAGG	1 cut(s)	635
EcoT14I	CCWWGG	2 cut(s)	58, 207
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	2 cut(s)	58, 207
FaeI	CATG	4 cut(s)	38, 211, 578, 657
FatI	CATG	4 cut(s)	34, 207, 574, 653
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	4 cut(s)	151, 154, 308, 648
FokI	GGATG	2 cut(s)	366, 401
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	4 cut(s)	151, 154, 308, 648
GlaI	GCGC	2 cut(s)	184, 617
GluI	GCNGC	4 cut(s)	151, 154, 308, 648
HaeIII	GGCC	1 cut(s)	626
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	2 cut(s)	185, 618
Hin1II	CATG	4 cut(s)	38, 211, 578, 657
Hin6I	GCGC	2 cut(s)	183, 616
HinP1I	GCGC	2 cut(s)	183, 616
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	4 cut(s)	45, 73, 212, 233
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	520, 598
Hpy188I	TCNGA	3 cut(s)	10, 487, 612
Hpy188III	TCNNGA	6 cut(s)	49, 164, 341, 402, 454, 591
Hpy8I	GTNNAC	2 cut(s)	520, 598
Hpy99I	CGWCG	1 cut(s)	436
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	5 cut(s)	156, 173, 494, 510, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 364, 647
HpyF3I	CTNAG	3 cut(s)	69, 363, 609
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	4 cut(s)	38, 211, 578, 657
HspAI	GCGC	2 cut(s)	183, 616
Kzo9I	GATC	2 cut(s)	5, 450
LpnPI	CCDG	7 cut(s)	131, 144, 159, 204, 229, 354, 480
Lsp1109I	GCAGC	2 cut(s)	140, 162
LweI	GCATC	2 cut(s)	481, 603
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	554
MalI	GATC	2 cut(s)	7, 452
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	2 cut(s)	5, 450
MboII	GAAGA	6 cut(s)	31, 130, 469, 472, 557, 614
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	2 cut(s)	293, 511
MnlI	CCTC	9 cut(s)	372, 379, 386, 406, 430, 542, 591, 631, 637
MseI	TTAA	2 cut(s)	93, 658
MslI	CAYNNNNRTG	2 cut(s)	35, 39
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	191, 364, 647
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	2 cut(s)	5, 450
NlaIII	CATG	4 cut(s)	38, 211, 578, 657
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	554
NspI	RCATGY	1 cut(s)	657
PaeR7I	CTCGAG	1 cut(s)	402
PciI	ACATGT	1 cut(s)	653
PfeI	GAWTC	4 cut(s)	45, 73, 212, 233
PkrI	GCNGC	4 cut(s)	152, 155, 309, 649
PscI	ACATGT	1 cut(s)	653
PspPI	GGNCC	1 cut(s)	14
PstI	CTGCAG	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	450
PvuII	CAGCTG	1 cut(s)	153
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
RseI	CAYNNNNRTG	2 cut(s)	35, 39
SaqAI	TTAA	2 cut(s)	93, 658
SatI	GCNGC	4 cut(s)	151, 154, 308, 648
Sau3AI	GATC	2 cut(s)	5, 450
Sau96I	GGNCC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	4 cut(s)	155, 190, 364, 417
SfaNI	GCATC	2 cut(s)	481, 603
SfcI	CTRYAG	1 cut(s)	171
Sfr274I	CTCGAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	14
SlaI	CTCGAG	1 cut(s)	402
SmiMI	CAYNNNNRTG	2 cut(s)	35, 39
SmlI	CTYRAG	2 cut(s)	164, 402
SmoI	CTYRAG	2 cut(s)	164, 402
Sse9I	AATT	2 cut(s)	293, 511
SsiI	CCGC	1 cut(s)	307
StyI	CCWWGG	2 cut(s)	58, 207
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	2 cut(s)	403, 431
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	2 cut(s)	293, 511
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	4 cut(s)	45, 73, 212, 233
Tru1I	TTAA	2 cut(s)	93, 658
Tru9I	TTAA	2 cut(s)	93, 658
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	3 cut(s)	150, 153, 647
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	3 cut(s)	23, 261, 336
TspGWI	ACGGA	3 cut(s)	323, 449, 524
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	14
XagI	CCTNNNNNAGG	1 cut(s)	635
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	1 cut(s)	657
XhoI	CTCGAG	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.