AT1G24480

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014962
Physical Location & Seq
Reverse (-)
8676360 .. 8677228
869 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G24480.1

Sequence Viewer

Length: 720 bp
ATGAAGCAACCAAAGCCGATTCTGAAATACGTCTTAGTCTCTATCTTCCTCACTCTCCCTCTCATCCTGTTCTTCTCTATACAACTACGTAAACCCGAAAAAGAACTCATCAGGATCCGACCAGGTTACACGTCTTACGATTACTACATCCAACGACAGCTCAACAAAACGCTTAACCCTAGGCTTCGTACGATATGGATGACACGAGACTGGGACCGTAAGATCAAAGTGTTCTCAAGATTCTTCCAAGATCTGAAACGTCAAGGCCTCTTATCCAAAGACTCTAAATGTCTCTGCCTCGGAGCTCGAGTCGGGCAAGAAGTGGAGGCCCTGAAACGTGTAGGCGTAAACGACTCGGTGGGAATGGATCTGGTGCCATATCCGCCGTTGGTGGTCAAAGGTGACTTTCATCACCAGCCGTTCGATGATGAGACTTTTGATTTTGAATTCTCCAACGTGTTTGATCATGCACTTTATCCGGACAAGTTTGTTGGAGAGATCGAACGGACACTGAGACCTGGAGGTTTATGTGTTTTACACGTGGCTCTCTCTACACGATCGGATAAGTATTCAGCCAATGATCTCTTCAGTGTGGAGGCATTGGTGAAACTATTCCGACAATCGGAGGTGGTTCATGTAAGAAATGTGGACGGCTTTGGGTTGGATACAGAGGTCGTGTTTAGGAAGAAAAGGGATTCATCCATCCTAGTTCGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

239

Amino Acids

27.83

Weight (kDa)

9.45

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_23 PF13489 79 - 189 4.1e-06 Methyltransferase domain
Methyltransf_11 PF08241 98 - 179 2.5e-10 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24480 AT4G24805
fragaria_vesca FvH4_4g25070
malus_domestica MD13G1106800.v1.1 MD16G1106900.v1.1
prunus_persica Prupe.1G239500_v2.0.a1
pyrus_communis pycom13g09260
rosa_chinensis RchiOBHm_Chr4g0432251
rosa_laevigata RLG00000006859
rosa_multiflora Rmu_co8384597.1_g000001
rosa_roxburghii Rroxscaffold_5G00373700
rosa_rugosa Rorug04G0255600
rosa_samantha Rh4BG320200 Rh4CG335400 Rh4DG315600
rosa_wichuraiana Rw4G027180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 373
AccIII TCCGGA 1 cut(s) 478
AciI CCGC 1 cut(s) 383
AclWI GGATC 3 cut(s) 109, 122, 375
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 571
AcvI CACGTG 1 cut(s) 541
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 622
AflIII ACRYGT 4 cut(s) 129, 337, 456, 538
AgsI TTSAA 1 cut(s) 446
AjiI CACGTC 1 cut(s) 132
AjnI CCWGG 2 cut(s) 121, 517
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AluBI AGCT 2 cut(s) 160, 305
AluI AGCT 2 cut(s) 160, 305
Alw21I GWGCWC 1 cut(s) 307
Alw26I GTCTC 5 cut(s) 43, 201, 296, 425, 508
AlwI GGATC 3 cut(s) 109, 122, 375
Ama87I CYCGRG 1 cut(s) 306
Aor13HI TCCGGA 1 cut(s) 478
AoxI GGCC 2 cut(s) 265, 327
ApoI RAATTY 1 cut(s) 446
Asp700I GAANNNNTTC 1 cut(s) 611
AspA2I CCTAGG 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 214, 328
AsuHPI GGTGA 3 cut(s) 404, 413, 616
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 1 cut(s) 214
AvrII CCTAGG 1 cut(s) 179
BaeI ACNNNNGTAYC 2 cut(s) 657, 690
BamHI GGATCC 1 cut(s) 114
BanI GGYRCC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 307
BauI CACGAG 1 cut(s) 204
BbrPI CACGTG 1 cut(s) 541
Bbv12I GWGCWC 1 cut(s) 307
BccI CCATC 1 cut(s) 710
BceAI ACGGC 3 cut(s) 370, 403, 667
BciT130I CCWGG 2 cut(s) 123, 519
BciVI GTATCC 1 cut(s) 658
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 5 cut(s) 43, 201, 296, 425, 508
BfaI CTAG 2 cut(s) 180, 707
BfuI GTATCC 1 cut(s) 658
BglII AGATCT 1 cut(s) 250
BlnI CCTAGG 1 cut(s) 179
Bme1390I CCNGG 2 cut(s) 123, 519
Bme18I GGWCC 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 306
BmgBI CACGTC 1 cut(s) 132
BmgT120I GGNCC 2 cut(s) 214, 328
BmiI GGNNCC 3 cut(s) 116, 215, 375
BmrFI CCNGG 2 cut(s) 123, 519
BmrI ACTGGG 1 cut(s) 220
BmuI ACTGGG 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 220
BsaAI YACGTR 2 cut(s) 89, 541
BsaI GGTCTC 1 cut(s) 508
BsaJI CCNNGG 2 cut(s) 179, 298
BsaWI WCCGGW 1 cut(s) 478
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 622
Bse1I ACTGG 1 cut(s) 215
BseAI TCCGGA 1 cut(s) 478
BseBI CCWGG 2 cut(s) 123, 519
BseDI CCNNGG 2 cut(s) 179, 298
BseGI GGATG 5 cut(s) 63, 147, 204, 698, 702
BseLI CCNNNNNNNGG 1 cut(s) 622
BseMII CTCAG 1 cut(s) 503
BseNI ACTGG 1 cut(s) 215
Bsh1285I CGRYCG 1 cut(s) 560
BshFI GGCC 2 cut(s) 267, 329
BshNI GGYRCC 1 cut(s) 373
BsiEI CGRYCG 1 cut(s) 560
BsiHKAI GWGCWC 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 1 cut(s) 479
BsiWI CGTACG 1 cut(s) 188
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 622
BsmAI GTCTC 5 cut(s) 43, 201, 296, 425, 508
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 2 cut(s) 267, 329
Bso31I GGTCTC 1 cut(s) 508
BsoBI CYCGRG 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 307
Bsp13I TCCGGA 1 cut(s) 478
Bsp143I GATC 8 cut(s) 114, 222, 250, 367, 463, 498, 557, 580
BspACI CCGC 1 cut(s) 383
BspANI GGCC 2 cut(s) 267, 329
BspCNI CTCAG 1 cut(s) 504
BspEI TCCGGA 1 cut(s) 478
BspLI GGNNCC 3 cut(s) 116, 215, 375
BspPI GGATC 3 cut(s) 109, 122, 375
BspT107I GGYRCC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 508
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 179, 298
BssMI GATC 8 cut(s) 114, 222, 250, 367, 463, 498, 557, 580
BssSI CACGAG 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 123, 519
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 590
BstBAI YACGTR 2 cut(s) 89, 541
BstDEI CTNAG 2 cut(s) 34, 512
BstF5I GGATG 5 cut(s) 63, 147, 204, 698, 702
BstKTI GATC 8 cut(s) 117, 225, 253, 370, 466, 501, 560, 583
BstMAI GTCTC 5 cut(s) 43, 201, 296, 425, 508
BstMBI GATC 8 cut(s) 114, 222, 250, 367, 463, 498, 557, 580
BstMCI CGRYCG 1 cut(s) 560
BstMWI GCNNNNNNNGC 2 cut(s) 13, 382
BstNI CCWGG 2 cut(s) 123, 519
BstSCI CCNGG 2 cut(s) 121, 517
BstSNI TACGTA 1 cut(s) 89
BstX2I RGATCY 3 cut(s) 114, 250, 367
BstYI RGATCY 3 cut(s) 114, 250, 367
BsuI GTATCC 1 cut(s) 658
BsuRI GGCC 2 cut(s) 267, 329
BtrI CACGTC 1 cut(s) 132
BtsCI GGATG 5 cut(s) 63, 147, 204, 698, 702
BtsIMutI CAGTG 2 cut(s) 509, 595
Cfr13I GGNCC 2 cut(s) 214, 328
CsiI ACCWGGT 1 cut(s) 121
Csp6I GTAC 1 cut(s) 189
CviAII CATG 2 cut(s) 467, 635
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 2 cut(s) 34, 512
DpnI GATC 8 cut(s) 116, 224, 252, 369, 465, 500, 559, 582
DpnII GATC 8 cut(s) 114, 222, 250, 367, 463, 498, 557, 580
Eam1104I CTCTTC 1 cut(s) 590
EarI CTCTTC 1 cut(s) 590
EciI GGCGGA 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 305
Eco105I TACGTA 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 179
Eco147I AGGCCT 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 571
Eco72I CACGTG 1 cut(s) 541
Eco88I CYCGRG 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 121, 517
EcoT14I CCWWGG 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 470, 638
FaiI YATR 6 cut(s) 80, 196, 379, 468, 529, 636
FaqI GGGAC 1 cut(s) 227
FatI CATG 2 cut(s) 466, 634
FbaI TGATCA 1 cut(s) 463
FokI GGATG 5 cut(s) 50, 134, 211, 685, 689
FriOI GRGCYC 1 cut(s) 307
FspBI CTAG 2 cut(s) 180, 707
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 2 cut(s) 267, 329
HapII CCGG 1 cut(s) 479
Hin1II CATG 2 cut(s) 470, 638
HinfI GANTC 6 cut(s) 19, 240, 281, 309, 353, 695
HpaII CCGG 1 cut(s) 479
HphI GGTGA 3 cut(s) 404, 413, 616
Hpy166II GTNNAC 3 cut(s) 92, 349, 649
Hpy188I TCNGA 7 cut(s) 24, 119, 255, 302, 562, 617, 625
Hpy188III TCNNGA 4 cut(s) 112, 237, 479, 717
Hpy8I GTNNAC 3 cut(s) 92, 349, 649
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 7 cut(s) 30, 88, 131, 259, 337, 456, 540
HpyCH4V TGCA 1 cut(s) 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 382
HpyF3I CTNAG 2 cut(s) 34, 512
HpySE526I ACGT 7 cut(s) 30, 88, 131, 259, 337, 456, 540
Hsp92II CATG 2 cut(s) 470, 638
Kpn2I TCCGGA 1 cut(s) 478
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 8 cut(s) 114, 222, 250, 367, 463, 498, 557, 580
LmnI GCTCC 1 cut(s) 302
MabI ACCWGGT 1 cut(s) 121
MaeI CTAG 2 cut(s) 180, 707
MaeII ACGT 7 cut(s) 30, 88, 131, 259, 337, 456, 540
MaeIII GTNAC 2 cut(s) 125, 401
MalI GATC 8 cut(s) 116, 224, 252, 369, 465, 500, 559, 582
MboI GATC 8 cut(s) 114, 222, 250, 367, 463, 498, 557, 580
MboII GAAGA 5 cut(s) 37, 64, 235, 577, 697
MflI RGATCY 3 cut(s) 114, 250, 367
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 1 cut(s) 446
MlyI GAGTC 3 cut(s) 275, 318, 347
MmeI TCCRAC 6 cut(s) 142, 175, 472, 477, 640, 642
MnlI CCTC 9 cut(s) 59, 69, 278, 308, 319, 515, 589, 619, 664
MroI TCCGGA 1 cut(s) 478
MroXI GAANNNNTTC 1 cut(s) 611
MseI TTAA 1 cut(s) 174
MspI CCGG 1 cut(s) 479
MspR9I CCNGG 2 cut(s) 123, 519
MvaI CCWGG 2 cut(s) 123, 519
MwoI GCNNNNNNNGC 2 cut(s) 13, 382
NdeII GATC 8 cut(s) 114, 222, 250, 367, 463, 498, 557, 580
NlaIII CATG 2 cut(s) 470, 638
NlaIV GGNNCC 3 cut(s) 116, 215, 375
NmuCI GTSAC 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 306
PceI AGGCCT 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 611
PfeI GAWTC 3 cut(s) 19, 240, 695
Pfl23II CGTACG 1 cut(s) 188
Ple19I CGATCG 1 cut(s) 560
PleI GAGTC 3 cut(s) 275, 317, 347
PmaCI CACGTG 1 cut(s) 541
PmlI CACGTG 1 cut(s) 541
PpsI GAGTC 3 cut(s) 275, 317, 347
Ppu21I YACGTR 2 cut(s) 89, 541
Psp124BI GAGCTC 1 cut(s) 307
Psp6I CCWGG 2 cut(s) 121, 517
PspCI CACGTG 1 cut(s) 541
PspGI CCWGG 2 cut(s) 121, 517
PspLI CGTACG 1 cut(s) 188
PspN4I GGNNCC 3 cut(s) 116, 215, 375
PspPI GGNCC 2 cut(s) 214, 328
PspXI VCTCGAGB 1 cut(s) 306
PsuI RGATCY 3 cut(s) 114, 250, 367
PvuI CGATCG 1 cut(s) 560
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SacI GAGCTC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 8 cut(s) 114, 222, 250, 367, 463, 498, 557, 580
Sau96I GGNCC 2 cut(s) 214, 328
SchI GAGTC 3 cut(s) 275, 318, 347
ScrFI CCNGG 2 cut(s) 123, 519
SduI GDGCHC 1 cut(s) 307
SexAI ACCWGGT 1 cut(s) 121
Sfr274I CTCGAG 1 cut(s) 306
SinI GGWCC 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 306
SmlI CTYRAG 2 cut(s) 235, 306
SmoI CTYRAG 2 cut(s) 235, 306
SnaBI TACGTA 1 cut(s) 89
Sse9I AATT 1 cut(s) 446
SseBI AGGCCT 1 cut(s) 267
SsiI CCGC 1 cut(s) 383
SspMI CTAG 2 cut(s) 180, 707
SstI GAGCTC 1 cut(s) 307
StuI AGGCCT 1 cut(s) 267
StyD4I CCNGG 2 cut(s) 121, 517
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 7 cut(s) 33, 91, 134, 262, 340, 459, 543
TaqI TCGA 3 cut(s) 307, 423, 501
TaqII GACCGA 1 cut(s) 702
TasI AATT 1 cut(s) 446
TfiI GAWTC 3 cut(s) 19, 240, 695
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 2 cut(s) 516, 595
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 4 cut(s) 17, 398, 623, 687
TspGWI ACGGA 1 cut(s) 520
TspRI CASTG 2 cut(s) 516, 595
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 446
XhoI CTCGAG 1 cut(s) 306
XmaJI CCTAGG 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 611
XspI CTAG 2 cut(s) 180, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.