Rorug04G0255600

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014962
Physical Location & Seq
Reverse (-)
42820050 .. 42824100
4051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0255600.1

Sequence Viewer

Length: 996 bp
ATGGAAGAGCCCGGGCAGCTCAAGCGGGCCTTTATTGATGGCACGGCGGGTTTAATCGCCGGTGGGATTTCCCGGACTGTTACTTCGCCGCTTGACGTTATCAAGATTCGATTCCAGGTTCAATTGGAGCCTACATCTTCATGGGCTTTGGTTCATCGGAATTTGTCTGGGCCGTCAAAATATACCGGGATGTTTCAAGCCACAAGGGATATTTTTAAAGAGGAAGGCTTACCGGGTTTTTGGCGAGGCAATGTTCCAGCTCTACTTATGGTTATGCCGTATACCGCAATACAGTTTACTGTACTACACAAGTTGAAGACATTTGCCGCTGGTTCTTCCAAGACAGAGGATCATGTTCATTTAAGTCCTTACTTGTCCTACATCAGTGGGGCATTAGCAGGTTGTGCGGCTACTGTCGGATCATACCCGTTTGATCTTCTAAGAACCTTGCTAGCTTCACAGGGGGAACCTAAGGTGTATCCAACTATGAGGTCTGCATTTGTCGATATAGTTAAAACTCGTGGATTTCGAGGATTGTATGCTGGATTGTCACCAACACTGGTTGAGATTGTTCCTTATGCAGGCTTGCAATTTGGTACCTATGACACATTTAAGCGCTGGACCATGATGTTGAACCAGTTTAGATCGTCTAGTGCAGACTTATACAGTACAGATAATAGTCTCACAAGCTTTCAGCTTTTCCTCTGTGGTCTGGCTGCTGGGACATGTGCCAAACTTGTCTGTCATCCACTTGATGTGGTCAAGAAAAGATTCCAGATTGAAGGACTACAGAGGCACCCAAGATATGGGGCTCGAGTAGAGCACCGTGCCTACAGCAATATGGTTGATGCTTTGCGACGAATAGTGCAGAAAGAAGGCTGGGCTGGTCTTTATAAGGGAATAGTCCCATCAACGGTCAAAGCTGCTCCTGCTGGTGCAGTGACATTTGTGGCTTATGAATATACATCCGACTGGTTAGAGTCCAGAATAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

331

Amino Acids

36.56

Weight (kDa)

9.46

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 13 - 109 1.3e-22 Mitochondrial carrier protein
Mito_carr PF00153 121 - 208 5.8e-23 Mitochondrial carrier protein
Mito_carr PF00153 228 - 327 1e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24480 AT4G24805
fragaria_vesca FvH4_4g25070
malus_domestica MD13G1106800.v1.1 MD16G1106900.v1.1
prunus_persica Prupe.1G239500_v2.0.a1
pyrus_communis pycom13g09260
rosa_chinensis RchiOBHm_Chr4g0432251
rosa_laevigata RLG00000006859
rosa_multiflora Rmu_co8384597.1_g000001
rosa_roxburghii Rroxscaffold_5G00373700
rosa_rugosa Rorug04G0255600
rosa_samantha Rh4BG320200 Rh4CG335400 Rh4DG315600
rosa_wichuraiana Rw4G027180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 894
Acc36I ACCTGC 1 cut(s) 389
Acc65I GGTACC 1 cut(s) 596
AccB1I GGYRCC 2 cut(s) 596, 795
AccB7I CCANNNNNTGG 1 cut(s) 806
AccI GTMKAC 1 cut(s) 281
AciI CCGC 6 cut(s) 25, 47, 89, 285, 327, 407
AclWI GGATC 2 cut(s) 357, 427
AcsI RAATTY 1 cut(s) 160
AfaI GTAC 3 cut(s) 303, 598, 670
AfeI AGCGCT 1 cut(s) 617
AfiI CCNNNNNNNGG 3 cut(s) 581, 806, 913
AflIII ACRYGT 1 cut(s) 725
AgsI TTSAA 5 cut(s) 122, 197, 316, 634, 782
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 6 cut(s) 19, 260, 455, 690, 697, 923
AluI AGCT 6 cut(s) 19, 260, 455, 690, 697, 923
Alw21I GWGCWC 1 cut(s) 825
Alw26I GTCTC 1 cut(s) 686
AlwI GGATC 2 cut(s) 357, 427
Ama87I CYCGRG 2 cut(s) 11, 813
Aor51HI AGCGCT 1 cut(s) 617
AoxI GGCC 2 cut(s) 27, 170
ApeKI GCWGC 3 cut(s) 16, 716, 923
ApoI RAATTY 1 cut(s) 160
ArsI GACNNNNNNTTYG 2 cut(s) 67, 99
Asp700I GAANNNNTTC 1 cut(s) 770
Asp718I GGTACC 1 cut(s) 596
AspLEI GCGC 1 cut(s) 618
AspS9I GGNCC 3 cut(s) 27, 170, 621
AsuC2I CCSGG 5 cut(s) 12, 13, 73, 187, 234
AsuHPI GGTGA 1 cut(s) 543
AsuNHI GCTAGC 1 cut(s) 451
AvaI CYCGRG 2 cut(s) 11, 813
AvaII GGWCC 1 cut(s) 621
AxyI CCTNAGG 1 cut(s) 471
BanI GGYRCC 2 cut(s) 596, 795
BanII GRGCYC 2 cut(s) 12, 814
BauI CACGAG 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 3 cut(s) 28, 703, 910
BccI CCATC 2 cut(s) 32, 916
BceAI ACGGC 3 cut(s) 60, 157, 262
BciT130I CCWGG 1 cut(s) 116
BciVI GTATCC 1 cut(s) 489
BcnI CCSGG 5 cut(s) 12, 13, 73, 187, 234
BcoDI GTCTC 1 cut(s) 686
BfaI CTAG 2 cut(s) 452, 651
BfmI CTRYAG 2 cut(s) 788, 832
BfoI RGCGCY 1 cut(s) 619
BfuAI ACCTGC 1 cut(s) 389
BfuI GTATCC 1 cut(s) 489
BisI GCNGC 6 cut(s) 17, 89, 327, 408, 717, 924
BlsI GCNGC 6 cut(s) 18, 90, 328, 409, 718, 925
Bme1390I CCNGG 6 cut(s) 12, 13, 73, 116, 187, 234
Bme18I GGWCC 1 cut(s) 621
BmeT110I CYCGRG 2 cut(s) 11, 813
BmgT120I GGNCC 3 cut(s) 27, 170, 621
BmiI GGNNCC 4 cut(s) 129, 468, 598, 797
BmrFI CCNGG 6 cut(s) 12, 13, 73, 116, 187, 234
BmsI GCATC 1 cut(s) 838
BmtI GCTAGC 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 5
BpuMI CCSGG 5 cut(s) 12, 13, 73, 187, 234
BsaJI CCNNGG 1 cut(s) 11
Bsc4I CCNNNNNNNGG 3 cut(s) 581, 806, 913
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 3 cut(s) 564, 637, 977
Bse21I CCTNAGG 1 cut(s) 471
Bse3DI GCAATG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 3 cut(s) 195, 745, 965
BseLI CCNNNNNNNGG 3 cut(s) 581, 806, 913
BseMI GCAATG 1 cut(s) 256
BseNI ACTGG 3 cut(s) 564, 637, 977
BseXI GCAGC 3 cut(s) 28, 703, 910
BseYI CCCAGC 2 cut(s) 719, 879
BsgI GTGCAG 3 cut(s) 675, 887, 957
BshFI GGCC 2 cut(s) 29, 172
BshNI GGYRCC 2 cut(s) 596, 795
BsiHKAI GWGCWC 1 cut(s) 825
BsiHKCI CYCGRG 2 cut(s) 11, 813
BsiSI CCGG 5 cut(s) 12, 60, 73, 186, 233
BslFI GGGAC 2 cut(s) 736, 890
BslI CCNNNNNNNGG 3 cut(s) 581, 806, 913
BsmAI GTCTC 1 cut(s) 686
BsmFI GGGAC 2 cut(s) 736, 890
BsnI GGCC 2 cut(s) 29, 172
BsoBI CYCGRG 2 cut(s) 11, 813
Bsp1286I GDGCHC 3 cut(s) 12, 814, 825
Bsp143I GATC 4 cut(s) 349, 419, 433, 644
BspACI CCGC 6 cut(s) 25, 47, 89, 285, 327, 407
BspANI GGCC 2 cut(s) 29, 172
BspLI GGNNCC 4 cut(s) 129, 468, 598, 797
BspMI ACCTGC 1 cut(s) 389
BspOI GCTAGC 1 cut(s) 455
BspPI GGATC 2 cut(s) 357, 427
BspT107I GGYRCC 2 cut(s) 596, 795
BsrDI GCAATG 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 3 cut(s) 564, 637, 977
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 4 cut(s) 349, 419, 433, 644
BssNAI GTATAC 1 cut(s) 282
BssSI CACGAG 1 cut(s) 519
Bst1107I GTATAC 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 7 cut(s) 79, 294, 301, 415, 668, 827, 916
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 4 cut(s) 27, 453, 583, 587
BstDEI CTNAG 2 cut(s) 440, 471
BstENI CCTNNNNNAGG 1 cut(s) 579
BstF5I GGATG 3 cut(s) 195, 745, 965
BstH2I RGCGCY 1 cut(s) 619
BstHHI GCGC 1 cut(s) 618
BstKTI GATC 4 cut(s) 352, 422, 436, 647
BstMAI GTCTC 1 cut(s) 686
BstMBI GATC 4 cut(s) 349, 419, 433, 644
BstMWI GCNNNNNNNGC 4 cut(s) 16, 22, 404, 929
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 729
BstSCI CCNGG 6 cut(s) 10, 11, 71, 114, 185, 232
BstSFI CTRYAG 2 cut(s) 788, 832
BstV1I GCAGC 3 cut(s) 28, 703, 910
BstV2I GAAGAC 1 cut(s) 323
BstZ17I GTATAC 1 cut(s) 282
Bsu36I CCTNAGG 1 cut(s) 471
BsuI GTATCC 1 cut(s) 489
BsuRI GGCC 2 cut(s) 29, 172
BtsCI GGATG 3 cut(s) 195, 745, 965
BtsI GCAGTG 1 cut(s) 945
BtsIMutI CAGTG 3 cut(s) 391, 557, 945
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 4 cut(s) 27, 453, 583, 587
CfoI GCGC 1 cut(s) 618
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 3 cut(s) 27, 170, 621
Cfr9I CCCGGG 1 cut(s) 11
Csp6I GTAC 3 cut(s) 302, 597, 669
CviAII CATG 4 cut(s) 141, 353, 625, 726
CviQI GTAC 3 cut(s) 302, 597, 669
DdeI CTNAG 2 cut(s) 440, 471
DpnI GATC 4 cut(s) 351, 421, 435, 646
DpnII GATC 4 cut(s) 349, 419, 433, 644
DraI TTTAAA 1 cut(s) 217
Eco24I GRGCYC 2 cut(s) 12, 814
Eco47I GGWCC 1 cut(s) 621
Eco47III AGCGCT 1 cut(s) 617
Eco81I CCTNAGG 1 cut(s) 471
Eco88I CYCGRG 2 cut(s) 11, 813
EcoNI CCTNNNNNAGG 1 cut(s) 579
EcoRII CCWGG 1 cut(s) 114
EcoT38I GRGCYC 2 cut(s) 12, 814
FaeI CATG 4 cut(s) 144, 356, 628, 729
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 2 cut(s) 736, 890
FatI CATG 4 cut(s) 140, 352, 624, 725
FauI CCCGC 2 cut(s) 18, 40
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 6 cut(s) 17, 89, 327, 408, 717, 924
FokI GGATG 3 cut(s) 202, 732, 952
FriOI GRGCYC 2 cut(s) 12, 814
Fsp4HI GCNGC 6 cut(s) 17, 89, 327, 408, 717, 924
FspBI CTAG 2 cut(s) 452, 651
GlaI GCGC 1 cut(s) 617
GluI GCNGC 6 cut(s) 17, 89, 327, 408, 717, 924
GsaI CCCAGC 2 cut(s) 723, 883
HaeII RGCGCY 1 cut(s) 619
HaeIII GGCC 2 cut(s) 29, 172
HapII CCGG 5 cut(s) 12, 60, 73, 186, 233
HhaI GCGC 1 cut(s) 618
Hin1II CATG 4 cut(s) 144, 356, 628, 729
Hin6I GCGC 1 cut(s) 616
HinP1I GCGC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 688
HinfI GANTC 4 cut(s) 106, 111, 771, 980
HpaII CCGG 5 cut(s) 12, 60, 73, 186, 233
HphI GGTGA 1 cut(s) 543
Hpy166II GTNNAC 2 cut(s) 282, 297
Hpy188I TCNGA 3 cut(s) 159, 419, 970
Hpy188III TCNNGA 4 cut(s) 103, 763, 775, 984
Hpy8I GTNNAC 2 cut(s) 282, 297
Hpy99I CGWCG 1 cut(s) 861
HpyAV CCTTC 3 cut(s) 218, 776, 869
HpyCH4III ACNGT 7 cut(s) 79, 294, 301, 415, 668, 827, 916
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 6 cut(s) 497, 581, 589, 656, 868, 938
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 22, 404, 929
HpyF3I CTNAG 2 cut(s) 440, 471
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 4 cut(s) 144, 356, 628, 729
HspAI GCGC 1 cut(s) 616
KpnI GGTACC 1 cut(s) 600
Kzo9I GATC 4 cut(s) 349, 419, 433, 644
LmnI GCTCC 2 cut(s) 127, 931
Lsp1109I GCAGC 3 cut(s) 28, 703, 910
LweI GCATC 1 cut(s) 838
MaeI CTAG 2 cut(s) 452, 651
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 3 cut(s) 79, 549, 940
MalI GATC 4 cut(s) 351, 421, 435, 646
MboI GATC 4 cut(s) 349, 419, 433, 644
MboII GAAGA 5 cut(s) 17, 129, 327, 328, 428
MfeI CAATTG 1 cut(s) 122
MhlI GDGCHC 3 cut(s) 12, 814, 825
MluCI AATT 3 cut(s) 122, 160, 590
MlyI GAGTC 1 cut(s) 989
MmeI TCCRAC 3 cut(s) 397, 506, 993
MnlI CCTC 7 cut(s) 214, 239, 340, 483, 524, 713, 786
MroXI GAANNNNTTC 1 cut(s) 770
MseI TTAA 5 cut(s) 53, 216, 362, 513, 612
MslI CAYNNNNRTG 1 cut(s) 139
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 5 cut(s) 12, 60, 73, 186, 233
MspR9I CCNGG 6 cut(s) 12, 13, 73, 116, 187, 234
MunI CAATTG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 4 cut(s) 16, 22, 404, 929
NciI CCSGG 5 cut(s) 12, 13, 73, 187, 234
NdeII GATC 4 cut(s) 349, 419, 433, 644
NheI GCTAGC 1 cut(s) 451
NlaIII CATG 4 cut(s) 144, 356, 628, 729
NlaIV GGNNCC 4 cut(s) 129, 468, 598, 797
NmuCI GTSAC 2 cut(s) 549, 940
NspI RCATGY 1 cut(s) 729
PaeR7I CTCGAG 1 cut(s) 813
PciI ACATGT 1 cut(s) 725
PcsI WCGNNNNNNNCGW 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 770
PfeI GAWTC 3 cut(s) 106, 111, 771
PflMI CCANNNNNTGG 1 cut(s) 806
PfoI TCCNGGA 1 cut(s) 71
PkrI GCNGC 6 cut(s) 18, 90, 328, 409, 718, 925
PleI GAGTC 1 cut(s) 988
PpsI GAGTC 1 cut(s) 988
PscI ACATGT 1 cut(s) 725
PsiI TTATAA 1 cut(s) 894
Psp6I CCWGG 1 cut(s) 114
PspFI CCCAGC 2 cut(s) 719, 879
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 4 cut(s) 129, 468, 598, 797
PspPI GGNCC 3 cut(s) 27, 170, 621
PspXI VCTCGAGB 1 cut(s) 813
RsaI GTAC 3 cut(s) 303, 598, 670
RsaNI GTAC 3 cut(s) 302, 597, 669
RseI CAYNNNNRTG 1 cut(s) 139
SaqAI TTAA 5 cut(s) 53, 216, 362, 513, 612
SatI GCNGC 6 cut(s) 17, 89, 327, 408, 717, 924
Sau3AI GATC 4 cut(s) 349, 419, 433, 644
Sau96I GGNCC 3 cut(s) 27, 170, 621
SchI GAGTC 1 cut(s) 989
ScrFI CCNGG 6 cut(s) 12, 13, 73, 116, 187, 234
SduI GDGCHC 3 cut(s) 12, 814, 825
SfaNI GCATC 1 cut(s) 838
SfcI CTRYAG 2 cut(s) 788, 832
Sfr274I CTCGAG 1 cut(s) 813
SgrAI CRCCGGYG 1 cut(s) 59
SinI GGWCC 1 cut(s) 621
SlaI CTCGAG 1 cut(s) 813
SmaI CCCGGG 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 139
SmlI CTYRAG 2 cut(s) 20, 813
SmoI CTYRAG 2 cut(s) 20, 813
SrfI GCCCGGGC 1 cut(s) 13
Sse9I AATT 3 cut(s) 122, 160, 590
SsiI CCGC 6 cut(s) 25, 47, 89, 285, 327, 407
SspMI CTAG 2 cut(s) 452, 651
StyD4I CCNGG 6 cut(s) 10, 11, 71, 114, 185, 232
TaaI ACNGT 7 cut(s) 79, 294, 301, 415, 668, 827, 916
TaiI ACGT 1 cut(s) 99
TaqI TCGA 4 cut(s) 109, 504, 529, 814
TasI AATT 3 cut(s) 122, 160, 590
TatI WGTACW 2 cut(s) 301, 668
TauI GCSGC 3 cut(s) 91, 329, 410
TfiI GAWTC 3 cut(s) 106, 111, 771
Tru1I TTAA 5 cut(s) 53, 216, 362, 513, 612
Tru9I TTAA 5 cut(s) 53, 216, 362, 513, 612
TscAI CASTG 3 cut(s) 391, 564, 945
TseFI GTSAC 2 cut(s) 549, 940
TseI GCWGC 3 cut(s) 16, 716, 923
Tsp45I GTSAC 2 cut(s) 549, 940
TspDTI ATGAA 4 cut(s) 129, 143, 347, 972
TspMI CCCGGG 1 cut(s) 11
TspRI CASTG 3 cut(s) 391, 564, 945
Van91I CCANNNNNTGG 1 cut(s) 806
VpaK11BI GGWCC 1 cut(s) 621
XagI CCTNNNNNAGG 1 cut(s) 579
XapI RAATTY 1 cut(s) 160
XceI RCATGY 1 cut(s) 729
XhoI CTCGAG 1 cut(s) 813
XmaI CCCGGG 1 cut(s) 11
XmiI GTMKAC 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 770
XspI CTAG 2 cut(s) 452, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.