FvH4_4g25070

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014962
Physical Location & Seq
Reverse (-)
26991099 .. 26991902
804 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25070.t1

Sequence Viewer

Length: 804 bp
ATGAAATCAAGCAGTACTCCCACACACCTGAAAAACAGCCCTCGTCAAACACGACGAGGCCCTTTCAAATACATAACGTTGCTCTCTTTCCTCTTCTTCCTCCCTGCCCTCTACCTCTTCCTCCACGTCAAGCACAACCTCCACCCCAACGCCATCATCGACCACTCTCTGCCGCACAACGTCCAAGTCCCCGACATCCGCATCCGCTCCGGCTACACCTCCTACAAGACCTACCTCCAGCGCCAGCTCAACAAAACCCTCAACCCTAAGCTCCGGAAGGTCTGGACCACCCGCGACTGGGACCGCAAGATCCAGGTCTTCTCCGAGTTCTTCTCCCGGTTGAAGCAGGAAGAGCTCCTGTCCAACAACTCTCGGGCGCTCTGTATCGGCGCCAGGGTGGGACAGGAGGTCGCGGCCCTGAAGCAAGTCGGGGTGGTAGACTCGATAGGGATGGACCTCGTGCCCTACCCACCTCTTGTTGTGGAGGGCGACTTCCACAACCAGCCTTTCGAGAACGACACGTTCGAGTTTGAATTCTCGAACGTGTTCGACCACGCGCTGTACCCTAGGAAGTTCGTGGCGGAGATCGAACGGACTTTGAAAGCCGGCGGGGTGTGCGTGTTACACGTGGCGATATCGAAGCGGGGGGATAAGTACTCGGCCAACGACTTGTTCAGTGTGCGGCCGTTGGTGGAGATGTTTCGGAGGTCCGACTTGGTTCGAGTCAGGAAGGTTGATGGGTTCGGGTTGGACACAGAGGTCGTCTTTCGGAAACGGGAAGTCAATGCCGTTCAACCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

268

Amino Acids

30.86

Weight (kDa)

9.76

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_11 PF08241 127 - 208 2.7e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24480 AT4G24805
fragaria_vesca FvH4_4g25070
malus_domestica MD13G1106800.v1.1 MD16G1106900.v1.1
prunus_persica Prupe.1G239500_v2.0.a1
pyrus_communis pycom13g09260
rosa_chinensis RchiOBHm_Chr4g0432251
rosa_laevigata RLG00000006859
rosa_multiflora Rmu_co8384597.1_g000001
rosa_roxburghii Rroxscaffold_5G00373700
rosa_rugosa Rorug04G0255600
rosa_samantha Rh4BG320200 Rh4CG335400 Rh4DG315600
rosa_wichuraiana Rw4G027180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 758
AccB1I GGYRCC 1 cut(s) 389
AccBSI CCGCTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 438
AccII CGCG 3 cut(s) 294, 413, 557
AccIII TCCGGA 1 cut(s) 273
AclI AACGTT 1 cut(s) 77
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 2 cut(s) 660, 683
AcsI RAATTY 1 cut(s) 533
AcuI CTGAAG 1 cut(s) 440
AcvI CACGTG 1 cut(s) 628
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 3 cut(s) 16, 563, 656
AfiI CCNNNNNNNGG 2 cut(s) 297, 298
AflIII ACRYGT 3 cut(s) 519, 543, 625
AgsI TTSAA 5 cut(s) 67, 343, 533, 601, 794
AhdI GACNNNNNGTC 1 cut(s) 407
AjiI CACGTC 1 cut(s) 127
AjnI CCWGG 2 cut(s) 312, 392
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
AluBI AGCT 3 cut(s) 247, 271, 355
AluI AGCT 3 cut(s) 247, 271, 355
Alw21I GWGCWC 1 cut(s) 357
AlwI GGATC 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 372
Aor13HI TCCGGA 1 cut(s) 273
AoxI GGCC 4 cut(s) 58, 414, 660, 683
ApoI RAATTY 1 cut(s) 533
Asp700I GAANNNNTTC 1 cut(s) 545
AspA2I CCTAGG 1 cut(s) 566
AspLEI GCGC 4 cut(s) 243, 379, 392, 559
AspS9I GGNCC 6 cut(s) 59, 285, 301, 415, 454, 708
AsuC2I CCSGG 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 4 cut(s) 285, 301, 454, 708
AvrII CCTAGG 1 cut(s) 566
BaeGI GKGCMC 1 cut(s) 465
BanI GGYRCC 1 cut(s) 389
BanII GRGCYC 1 cut(s) 357
BauI CACGAG 1 cut(s) 458
BbrPI CACGTG 1 cut(s) 628
BbsI GAAGAC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 357
BccI CCATC 3 cut(s) 161, 445, 731
BceAI ACGGC 2 cut(s) 670, 773
BciT130I CCWGG 2 cut(s) 314, 394
BcnI CCSGG 1 cut(s) 337
BfaI CTAG 1 cut(s) 567
BfoI RGCGCY 3 cut(s) 244, 380, 393
BisI GCNGC 3 cut(s) 173, 414, 683
BlnI CCTAGG 1 cut(s) 566
BlsI GCNGC 3 cut(s) 174, 415, 684
BmcAI AGTACT 2 cut(s) 16, 656
Bme1390I CCNGG 3 cut(s) 314, 337, 394
Bme18I GGWCC 4 cut(s) 285, 301, 454, 708
BmeRI GACNNNNNGTC 1 cut(s) 407
BmeT110I CYCGRG 1 cut(s) 372
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 6 cut(s) 59, 285, 301, 415, 454, 708
BmiI GGNNCC 2 cut(s) 302, 391
BmrFI CCNGG 3 cut(s) 314, 337, 394
BmrI ACTGGG 1 cut(s) 307
BmsI GCATC 1 cut(s) 210
BmuI ACTGGG 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 310
BplI GAGNNNNNCTC 2 cut(s) 317, 349
BpmI CTGGAG 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 337
BsaAI YACGTR 1 cut(s) 628
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 2 cut(s) 393, 566
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 298
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 1 cut(s) 302
BseAI TCCGGA 1 cut(s) 273
BseBI CCWGG 2 cut(s) 314, 394
BseDI CCNNGG 2 cut(s) 393, 566
BseGI GGATG 3 cut(s) 195, 201, 456
BseLI CCNNNNNNNGG 2 cut(s) 297, 298
BseNI ACTGG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 465
BseX3I CGGCCG 1 cut(s) 683
Bsh1236I CGCG 3 cut(s) 294, 413, 557
Bsh1285I CGRYCG 1 cut(s) 686
BshFI GGCC 4 cut(s) 60, 416, 662, 685
BshNI GGYRCC 1 cut(s) 389
BsiEI CGRYCG 1 cut(s) 686
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 4 cut(s) 210, 274, 337, 606
BslFI GGGAC 3 cut(s) 173, 314, 414
BslI CCNNNNNNNGG 2 cut(s) 297, 298
BsmFI GGGAC 3 cut(s) 173, 314, 414
BsnI GGCC 4 cut(s) 60, 416, 662, 685
BsoBI CYCGRG 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 357, 465
Bsp13I TCCGGA 1 cut(s) 273
Bsp143I GATC 2 cut(s) 309, 585
BspANI GGCC 4 cut(s) 60, 416, 662, 685
BspEI TCCGGA 1 cut(s) 273
BspFNI CGCG 3 cut(s) 294, 413, 557
BspLI GGNNCC 2 cut(s) 302, 391
BspPI GGATC 1 cut(s) 304
BspQI GCTCTTC 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 389
BsrBI CCGCTC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 605
BsrI ACTGG 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 2 cut(s) 393, 566
BssMI GATC 2 cut(s) 309, 585
BssNI GRCGYC 1 cut(s) 390
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 566
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 2 cut(s) 314, 394
Bst6I CTCTTC 3 cut(s) 98, 122, 345
BstACI GRCGYC 1 cut(s) 390
BstBAI YACGTR 1 cut(s) 628
BstC8I GCNNGC 2 cut(s) 245, 607
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 3 cut(s) 195, 201, 456
BstFNI CGCG 3 cut(s) 294, 413, 557
BstH2I RGCGCY 3 cut(s) 244, 380, 393
BstHHI GCGC 4 cut(s) 243, 379, 392, 559
BstKTI GATC 2 cut(s) 312, 588
BstMBI GATC 2 cut(s) 309, 585
BstMCI CGRYCG 1 cut(s) 686
BstMWI GCNNNNNNNGC 2 cut(s) 352, 615
BstNI CCWGG 2 cut(s) 314, 394
BstSCI CCNGG 3 cut(s) 312, 335, 392
BstSLI GKGCMC 1 cut(s) 465
BstUI CGCG 3 cut(s) 294, 413, 557
BstV2I GAAGAC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
BstZI CGGCCG 1 cut(s) 683
BsuRI GGCC 4 cut(s) 60, 416, 662, 685
BtrI CACGTC 1 cut(s) 127
BtsCI GGATG 3 cut(s) 195, 201, 456
BtsIMutI CAGTG 1 cut(s) 682
Cac8I GCNNGC 2 cut(s) 245, 607
CfoI GCGC 4 cut(s) 243, 379, 392, 559
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 6 cut(s) 59, 285, 301, 415, 454, 708
Csp6I GTAC 3 cut(s) 15, 562, 655
CviQI GTAC 3 cut(s) 15, 562, 655
DdeI CTNAG 1 cut(s) 267
DinI GGCGCC 1 cut(s) 391
DpnI GATC 2 cut(s) 311, 587
DpnII GATC 2 cut(s) 309, 585
DrdI GACNNNNNNGTC 1 cut(s) 758
DriI GACNNNNNGTC 1 cut(s) 407
DseDI GACNNNNNNGTC 1 cut(s) 758
EaeI YGGCCR 2 cut(s) 660, 683
EagI CGGCCG 1 cut(s) 683
Eam1104I CTCTTC 3 cut(s) 98, 122, 345
Eam1105I GACNNNNNGTC 1 cut(s) 407
EarI CTCTTC 3 cut(s) 98, 122, 345
EciI GGCGGA 1 cut(s) 596
Ecl136II GAGCTC 1 cut(s) 355
EclXI CGGCCG 1 cut(s) 683
Eco130I CCWWGG 1 cut(s) 566
Eco24I GRGCYC 1 cut(s) 357
Eco32I GATATC 1 cut(s) 636
Eco47I GGWCC 4 cut(s) 285, 301, 454, 708
Eco52I CGGCCG 1 cut(s) 683
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 440
Eco72I CACGTG 1 cut(s) 628
Eco88I CYCGRG 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 59
EcoRI GAATTC 1 cut(s) 533
EcoRII CCWGG 2 cut(s) 312, 392
EcoRV GATATC 1 cut(s) 636
EcoT14I CCWWGG 1 cut(s) 566
EcoT38I GRGCYC 1 cut(s) 357
EgeI GGCGCC 1 cut(s) 391
EheI GGCGCC 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 566
FaiI YATR 1 cut(s) 74
FaqI GGGAC 3 cut(s) 173, 314, 414
FauI CCCGC 3 cut(s) 299, 602, 636
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 3 cut(s) 173, 414, 683
FokI GGATG 3 cut(s) 182, 188, 463
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 3 cut(s) 173, 414, 683
FspBI CTAG 1 cut(s) 567
GlaI GCGC 4 cut(s) 242, 378, 391, 558
GluI GCNGC 3 cut(s) 173, 414, 683
GsuI CTGGAG 1 cut(s) 221
HaeII RGCGCY 3 cut(s) 244, 380, 393
HaeIII GGCC 4 cut(s) 60, 416, 662, 685
HapII CCGG 4 cut(s) 210, 274, 337, 606
HhaI GCGC 4 cut(s) 243, 379, 392, 559
Hin1I GRCGYC 1 cut(s) 390
Hin6I GCGC 4 cut(s) 241, 377, 390, 557
HinP1I GCGC 4 cut(s) 241, 377, 390, 557
HinfI GANTC 2 cut(s) 440, 723
HpaII CCGG 4 cut(s) 210, 274, 337, 606
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 4 cut(s) 325, 705, 712, 771
Hpy188III TCNNGA 5 cut(s) 274, 283, 511, 538, 727
Hpy8I GTNNAC 1 cut(s) 439
Hpy99I CGWCG 1 cut(s) 57
HpyAV CCTTC 2 cut(s) 271, 724
HpyCH4IV ACGT 6 cut(s) 77, 126, 180, 521, 543, 627
HpyF10VI GCNNNNNNNGC 2 cut(s) 352, 615
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 6 cut(s) 77, 126, 180, 521, 543, 627
Hsp92I GRCGYC 1 cut(s) 390
HspAI GCGC 4 cut(s) 241, 377, 390, 557
KasI GGCGCC 1 cut(s) 389
Kpn2I TCCGGA 1 cut(s) 273
KroI GCCGGC 1 cut(s) 605
KroNI GCCGGC 1 cut(s) 607
Kzo9I GATC 2 cut(s) 309, 585
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 3 cut(s) 212, 276, 360
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 567
MaeII ACGT 6 cut(s) 77, 126, 180, 521, 543, 627
MaeIII GTNAC 1 cut(s) 621
MalI GATC 2 cut(s) 311, 587
MbiI CCGCTC 1 cut(s) 207
MboI GATC 2 cut(s) 309, 585
MboII GAAGA 6 cut(s) 85, 88, 109, 310, 322, 362
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 2 cut(s) 357, 465
MluCI AATT 1 cut(s) 533
Mly113I GGCGCC 1 cut(s) 390
MlyI GAGTC 2 cut(s) 434, 732
MmeI TCCRAC 3 cut(s) 387, 729, 735
MroI TCCGGA 1 cut(s) 273
MroNI GCCGGC 1 cut(s) 605
MroXI GAANNNNTTC 1 cut(s) 545
MspI CCGG 4 cut(s) 210, 274, 337, 606
MspR9I CCNGG 3 cut(s) 314, 337, 394
MvaI CCWGG 2 cut(s) 314, 394
MvnI CGCG 3 cut(s) 294, 413, 557
MwoI GCNNNNNNNGC 2 cut(s) 352, 615
NaeI GCCGGC 1 cut(s) 607
NarI GGCGCC 1 cut(s) 390
NciI CCSGG 1 cut(s) 337
NdeII GATC 2 cut(s) 309, 585
NgoMIV GCCGGC 1 cut(s) 605
NlaIV GGNNCC 2 cut(s) 302, 391
NmeAIII GCCGAG 1 cut(s) 638
PciSI GCTCTTC 1 cut(s) 345
PcsI WCGNNNNNNNCGW 3 cut(s) 49, 156, 522
PdiI GCCGGC 1 cut(s) 607
PdmI GAANNNNTTC 1 cut(s) 545
PkrI GCNGC 3 cut(s) 174, 415, 684
PleI GAGTC 2 cut(s) 434, 731
PluTI GGCGCC 1 cut(s) 393
PmaCI CACGTG 1 cut(s) 628
PmlI CACGTG 1 cut(s) 628
PpsI GAGTC 2 cut(s) 434, 731
Ppu21I YACGTR 1 cut(s) 628
Psp124BI GAGCTC 1 cut(s) 357
Psp1406I AACGTT 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 312, 392
PspCI CACGTG 1 cut(s) 628
PspGI CCWGG 2 cut(s) 312, 392
PspN4I GGNNCC 2 cut(s) 302, 391
PspPI GGNCC 6 cut(s) 59, 285, 301, 415, 454, 708
PsuI RGATCY 1 cut(s) 309
RsaI GTAC 3 cut(s) 16, 563, 656
RsaNI GTAC 3 cut(s) 15, 562, 655
SacI GAGCTC 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 345
SatI GCNGC 3 cut(s) 173, 414, 683
Sau3AI GATC 2 cut(s) 309, 585
Sau96I GGNCC 6 cut(s) 59, 285, 301, 415, 454, 708
ScaI AGTACT 2 cut(s) 16, 656
SchI GAGTC 2 cut(s) 434, 732
ScrFI CCNGG 3 cut(s) 314, 337, 394
SduI GDGCHC 2 cut(s) 357, 465
SfaNI GCATC 1 cut(s) 210
SfoI GGCGCC 1 cut(s) 391
SinI GGWCC 4 cut(s) 285, 301, 454, 708
Sse9I AATT 1 cut(s) 533
SspDI GGCGCC 1 cut(s) 389
SspMI CTAG 1 cut(s) 567
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 3 cut(s) 312, 335, 392
StyI CCWWGG 1 cut(s) 566
TaiI ACGT 6 cut(s) 80, 129, 183, 524, 546, 630
TaqI TCGA 9 cut(s) 159, 443, 510, 525, 539, 549, 588, 638, 721
TasI AATT 1 cut(s) 533
TatI WGTACW 2 cut(s) 14, 654
TauI GCSGC 3 cut(s) 175, 416, 685
TscAI CASTG 1 cut(s) 682
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 607
TspRI CASTG 1 cut(s) 682
VpaK11BI GGWCC 4 cut(s) 285, 301, 454, 708
XapI RAATTY 1 cut(s) 533
XmaJI CCTAGG 1 cut(s) 566
XmiI GTMKAC 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 1 cut(s) 567
ZrmI AGTACT 2 cut(s) 16, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.