RchiOBHm_Chr4g0432251

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014962
Physical Location & Seq
Reverse (-)
56437871 .. 56438861
991 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40087

Sequence Viewer

Length: 819 bp
ATGGCTCCCACACAAAGGAAAACCAGTACTCCCACATACATGAAAACAAGCACTCATCCACCAAAACGACGAGTCACTTTCAAATACATAACGTTGCTCTCTTCCTTCCTCTTCCTCCCTGTCCTCTATTTCTTCCTTCACGTCAAGCACAACCTCCAACCCACCGCCATCGTCGACCACTCACTGCCGCACCACGTCCAAGTCCCCGACATCCGAATCCGCTCCGGCTACACCTCCTACAAGACCTACCTCCAGCACCAGCTCAACAAGACCCTCAACCCTAAACTCCGCAAAGTCTGGACCACCCGCGACTGGGACCGCAAAATCCAGGTCTTCTCCGAGATTTTCACTAGGTTGAAGCACGAAAAGCTCCTGTCAAATAACTCTCGGGCGCTGTGTATTGGCGCCCGAGTAGGGCAGGAGGTCCAGGCTCTGAAACGAATCGGGGTGAATGACTCGATCGGGATGGACCTCGTGCCCTACCCTCCTCTGGTTGTGGAGGGGGACTTTCACAGCCAGCCTTTTCAGAACGAGACGTTCGACTTCGAATTCTCGAACGTGTTCGATCACGCGCTGTACCCTAGGAAGTTCGTGGCGGAGATCGAGCGGACGTTGAGGCGGCGCGGGGTGTGTGTGTTACACGTGGCCATATCGAAGCGGGGGGATAAGTACTCGGCCAACGACCTGTTCAGTGTGCGGCCATTGGTGGAGATGTTTCAGAGGTCCGAGTTGGTTTATGTCAGGAAGGTTGACGGGTTTGGGTTGGACACCGAGGTCGTCTTTCGGAAACGGGAAGTCAAACTCATCCAACAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

272

Amino Acids

31.89

Weight (kDa)

10.03

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_11 PF08241 132 - 213 4.1e-08 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24480 AT4G24805
fragaria_vesca FvH4_4g25070
malus_domestica MD13G1106800.v1.1 MD16G1106900.v1.1
prunus_persica Prupe.1G239500_v2.0.a1
pyrus_communis pycom13g09260
rosa_chinensis RchiOBHm_Chr4g0432251
rosa_laevigata RLG00000006859
rosa_multiflora Rmu_co8384597.1_g000001
rosa_roxburghii Rroxscaffold_5G00373700
rosa_rugosa Rorug04G0255600
rosa_samantha Rh4BG320200 Rh4CG335400 Rh4DG315600
rosa_wichuraiana Rw4G027180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 773
AccB1I GGYRCC 1 cut(s) 404
AccBSI CCGCTC 2 cut(s) 222, 607
AccI GTMKAC 1 cut(s) 174
AccII CGCG 3 cut(s) 309, 572, 624
AclI AACGTT 1 cut(s) 92
AcoI YGGCCR 3 cut(s) 645, 675, 698
AcsI RAATTY 1 cut(s) 548
AcvI CACGTG 1 cut(s) 643
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 3 cut(s) 28, 578, 671
AfiI CCNNNNNNNGG 5 cut(s) 15, 312, 313, 414, 490
AflIII ACRYGT 2 cut(s) 558, 640
AgsI TTSAA 2 cut(s) 82, 358
AjiI CACGTC 2 cut(s) 142, 196
AjnI CCWGG 2 cut(s) 327, 426
AjuI GAANNNNNNNTTGG 2 cut(s) 671, 703
AluBI AGCT 2 cut(s) 262, 370
AluI AGCT 2 cut(s) 262, 370
Alw26I GTCTC 1 cut(s) 527
AlwNI CAGNNNCTG 1 cut(s) 433
Ama87I CYCGRG 2 cut(s) 387, 408
AoxI GGCC 3 cut(s) 645, 675, 698
ApoI RAATTY 1 cut(s) 548
ArsI GACNNNNNNTTYG 2 cut(s) 315, 347
Asp700I GAANNNNTTC 1 cut(s) 560
AspA2I CCTAGG 1 cut(s) 581
AspLEI GCGC 4 cut(s) 394, 407, 574, 624
AspS9I GGNCC 5 cut(s) 300, 316, 424, 469, 723
AsuHPI GGTGA 1 cut(s) 460
AsuII TTCGAA 1 cut(s) 546
AvaI CYCGRG 2 cut(s) 387, 408
AvaII GGWCC 5 cut(s) 300, 316, 424, 469, 723
AvrII CCTAGG 1 cut(s) 581
BaeGI GKGCMC 1 cut(s) 480
BalI TGGCCA 1 cut(s) 647
BanI GGYRCC 1 cut(s) 404
BauI CACGAG 1 cut(s) 473
BbrPI CACGTG 1 cut(s) 643
BbsI GAAGAC 1 cut(s) 325
BccI CCATC 2 cut(s) 176, 460
BciT130I CCWGG 2 cut(s) 329, 428
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 2 cut(s) 351, 582
BfoI RGCGCY 2 cut(s) 395, 408
BisI GCNGC 3 cut(s) 188, 620, 698
BlnI CCTAGG 1 cut(s) 581
BlsI GCNGC 3 cut(s) 189, 621, 699
BmcAI AGTACT 2 cut(s) 28, 671
Bme1390I CCNGG 2 cut(s) 329, 428
Bme18I GGWCC 5 cut(s) 300, 316, 424, 469, 723
BmeT110I CYCGRG 2 cut(s) 387, 408
BmgBI CACGTC 2 cut(s) 142, 196
BmgT120I GGNCC 5 cut(s) 300, 316, 424, 469, 723
BmiI GGNNCC 3 cut(s) 6, 317, 406
BmrFI CCNGG 2 cut(s) 329, 428
BmrI ACTGGG 1 cut(s) 322
BmuI ACTGGG 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 236
Bpu14I TTCGAA 1 cut(s) 546
BsaAI YACGTR 1 cut(s) 643
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 581, 771
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 5 cut(s) 15, 312, 313, 414, 490
Bse1I ACTGG 2 cut(s) 24, 317
BseBI CCWGG 2 cut(s) 329, 428
BseDI CCNNGG 2 cut(s) 581, 771
BseGI GGATG 4 cut(s) 55, 210, 471, 804
BseLI CCNNNNNNNGG 5 cut(s) 15, 312, 313, 414, 490
BseNI ACTGG 2 cut(s) 24, 317
BseRI GAGGAG 1 cut(s) 477
BseSI GKGCMC 1 cut(s) 480
Bsh1236I CGCG 3 cut(s) 309, 572, 624
Bsh1285I CGRYCG 1 cut(s) 462
BshFI GGCC 3 cut(s) 647, 677, 700
BshNI GGYRCC 1 cut(s) 404
BsiEI CGRYCG 1 cut(s) 462
BsiHKCI CYCGRG 2 cut(s) 387, 408
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 3 cut(s) 188, 329, 518
BslI CCNNNNNNNGG 5 cut(s) 15, 312, 313, 414, 490
BsmAI GTCTC 1 cut(s) 527
BsmBI CGTCTC 1 cut(s) 527
BsmFI GGGAC 3 cut(s) 188, 329, 518
BsnI GGCC 3 cut(s) 647, 677, 700
BsoBI CYCGRG 2 cut(s) 387, 408
Bsp119I TTCGAA 1 cut(s) 546
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 3 cut(s) 459, 565, 600
BspANI GGCC 3 cut(s) 647, 677, 700
BspFNI CGCG 3 cut(s) 309, 572, 624
BspLI GGNNCC 3 cut(s) 6, 317, 406
BspT104I TTCGAA 1 cut(s) 546
BspT107I GGYRCC 1 cut(s) 404
BsrBI CCGCTC 2 cut(s) 222, 607
BsrI ACTGG 2 cut(s) 24, 317
BssECI CCNNGG 2 cut(s) 581, 771
BssMI GATC 3 cut(s) 459, 565, 600
BssNI GRCGYC 1 cut(s) 405
BssSI CACGAG 1 cut(s) 473
BssT1I CCWWGG 1 cut(s) 581
Bst2BI CACGAG 1 cut(s) 473
Bst2UI CCWGG 2 cut(s) 329, 428
Bst4CI ACNGT 1 cut(s) 816
Bst6I CTCTTC 2 cut(s) 106, 116
BstACI GRCGYC 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 643
BstBI TTCGAA 1 cut(s) 546
BstC8I GCNNGC 1 cut(s) 518
BstF5I GGATG 4 cut(s) 55, 210, 471, 804
BstFNI CGCG 3 cut(s) 309, 572, 624
BstH2I RGCGCY 2 cut(s) 395, 408
BstHHI GCGC 4 cut(s) 394, 407, 574, 624
BstKTI GATC 3 cut(s) 462, 568, 603
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 3 cut(s) 459, 565, 600
BstMCI CGRYCG 1 cut(s) 462
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstNI CCWGG 2 cut(s) 329, 428
BstSCI CCNGG 2 cut(s) 327, 426
BstSLI GKGCMC 1 cut(s) 480
BstUI CGCG 3 cut(s) 309, 572, 624
BstV2I GAAGAC 1 cut(s) 325
BsuRI GGCC 3 cut(s) 647, 677, 700
BtrI CACGTC 2 cut(s) 142, 196
BtsCI GGATG 4 cut(s) 55, 210, 471, 804
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 2 cut(s) 182, 697
Cac8I GCNNGC 1 cut(s) 518
CaiI CAGNNNCTG 1 cut(s) 433
CfoI GCGC 4 cut(s) 394, 407, 574, 624
Cfr13I GGNCC 5 cut(s) 300, 316, 424, 469, 723
Csp6I GTAC 3 cut(s) 27, 577, 670
CviAII CATG 1 cut(s) 40
CviQI GTAC 3 cut(s) 27, 577, 670
DinI GGCGCC 1 cut(s) 406
DpnI GATC 3 cut(s) 461, 567, 602
DpnII GATC 3 cut(s) 459, 565, 600
DrdI GACNNNNNNGTC 1 cut(s) 773
DseDI GACNNNNNNGTC 1 cut(s) 773
EaeI YGGCCR 3 cut(s) 645, 675, 698
Eam1104I CTCTTC 2 cut(s) 106, 116
EarI CTCTTC 2 cut(s) 106, 116
EciI GGCGGA 1 cut(s) 611
Eco130I CCWWGG 1 cut(s) 581
Eco47I GGWCC 5 cut(s) 300, 316, 424, 469, 723
Eco72I CACGTG 1 cut(s) 643
Eco88I CYCGRG 2 cut(s) 387, 408
EcoRI GAATTC 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 327, 426
EcoT14I CCWWGG 1 cut(s) 581
EgeI GGCGCC 1 cut(s) 406
EheI GGCGCC 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 581
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 1 cut(s) 43
FaiI YATR 5 cut(s) 37, 41, 89, 650, 738
FaqI GGGAC 3 cut(s) 188, 329, 518
FatI CATG 1 cut(s) 39
FauI CCCGC 3 cut(s) 314, 617, 651
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 188, 620, 698
FokI GGATG 4 cut(s) 42, 197, 478, 791
Fsp4HI GCNGC 3 cut(s) 188, 620, 698
FspBI CTAG 2 cut(s) 351, 582
GlaI GCGC 4 cut(s) 393, 406, 573, 623
GluI GCNGC 3 cut(s) 188, 620, 698
GsuI CTGGAG 1 cut(s) 236
HaeII RGCGCY 2 cut(s) 395, 408
HaeIII GGCC 3 cut(s) 647, 677, 700
HapII CCGG 1 cut(s) 225
HhaI GCGC 4 cut(s) 394, 407, 574, 624
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 4 cut(s) 392, 405, 572, 622
HinP1I GCGC 4 cut(s) 392, 405, 572, 622
HincII GTYRAC 2 cut(s) 175, 751
HindII GTYRAC 2 cut(s) 175, 751
HinfI GANTC 4 cut(s) 72, 216, 441, 455
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 2 cut(s) 175, 751
Hpy188I TCNGA 7 cut(s) 215, 340, 435, 528, 720, 727, 786
Hpy188III TCNNGA 4 cut(s) 298, 463, 553, 742
Hpy8I GTNNAC 2 cut(s) 175, 751
Hpy99I CGWCG 2 cut(s) 72, 176
HpyAV CCTTC 3 cut(s) 115, 146, 739
HpyCH4III ACNGT 1 cut(s) 816
HpyCH4IV ACGT 7 cut(s) 92, 141, 195, 536, 558, 611, 642
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpySE526I ACGT 7 cut(s) 92, 141, 195, 536, 558, 611, 642
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 4 cut(s) 392, 405, 572, 622
KasI GGCGCC 1 cut(s) 404
Kzo9I GATC 3 cut(s) 459, 565, 600
LmnI GCTCC 3 cut(s) 10, 227, 375
MaeI CTAG 2 cut(s) 351, 582
MaeII ACGT 7 cut(s) 92, 141, 195, 536, 558, 611, 642
MaeIII GTNAC 2 cut(s) 73, 636
MalI GATC 3 cut(s) 461, 567, 602
MbiI CCGCTC 2 cut(s) 222, 607
MboI GATC 3 cut(s) 459, 565, 600
MboII GAAGA 4 cut(s) 93, 103, 124, 325
MhlI GDGCHC 1 cut(s) 480
MlsI TGGCCA 1 cut(s) 647
MluCI AATT 1 cut(s) 548
MluNI TGGCCA 1 cut(s) 647
Mly113I GGCGCC 1 cut(s) 405
MlyI GAGTC 2 cut(s) 81, 449
MmeI TCCRAC 2 cut(s) 181, 744
Mox20I TGGCCA 1 cut(s) 647
MroXI GAANNNNTTC 1 cut(s) 560
MscI TGGCCA 1 cut(s) 647
MslI CAYNNNNRTG 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 647
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 329, 428
MvaI CCWGG 2 cut(s) 329, 428
MvnI CGCG 3 cut(s) 309, 572, 624
MwoI GCNNNNNNNGC 1 cut(s) 367
NarI GGCGCC 1 cut(s) 405
NdeII GATC 3 cut(s) 459, 565, 600
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 3 cut(s) 6, 317, 406
NmeAIII GCCGAG 1 cut(s) 653
NmuCI GTSAC 1 cut(s) 73
NspV TTCGAA 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 2 cut(s) 216, 441
PkrI GCNGC 3 cut(s) 189, 621, 699
Ple19I CGATCG 1 cut(s) 462
PleI GAGTC 2 cut(s) 80, 449
PluTI GGCGCC 1 cut(s) 408
PmaCI CACGTG 1 cut(s) 643
PmlI CACGTG 1 cut(s) 643
PpsI GAGTC 2 cut(s) 80, 449
Ppu21I YACGTR 1 cut(s) 643
Psp1406I AACGTT 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 327, 426
PspCI CACGTG 1 cut(s) 643
PspGI CCWGG 2 cut(s) 327, 426
PspN4I GGNNCC 3 cut(s) 6, 317, 406
PspPI GGNCC 5 cut(s) 300, 316, 424, 469, 723
PstNI CAGNNNCTG 1 cut(s) 433
PvuI CGATCG 1 cut(s) 462
RsaI GTAC 3 cut(s) 28, 578, 671
RsaNI GTAC 3 cut(s) 27, 577, 670
RseI CAYNNNNRTG 1 cut(s) 38
SalI GTCGAC 1 cut(s) 173
SatI GCNGC 3 cut(s) 188, 620, 698
Sau3AI GATC 3 cut(s) 459, 565, 600
Sau96I GGNCC 5 cut(s) 300, 316, 424, 469, 723
ScaI AGTACT 2 cut(s) 28, 671
SchI GAGTC 2 cut(s) 81, 449
ScrFI CCNGG 2 cut(s) 329, 428
SduI GDGCHC 1 cut(s) 480
SfoI GGCGCC 1 cut(s) 406
SfuI TTCGAA 1 cut(s) 546
SinI GGWCC 5 cut(s) 300, 316, 424, 469, 723
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 1 cut(s) 548
SspDI GGCGCC 1 cut(s) 404
SspMI CTAG 2 cut(s) 351, 582
StyD4I CCNGG 2 cut(s) 327, 426
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 1 cut(s) 816
TaiI ACGT 7 cut(s) 95, 144, 198, 539, 561, 614, 645
TaqI TCGA 8 cut(s) 174, 458, 540, 546, 554, 564, 603, 653
TasI AATT 1 cut(s) 548
TatI WGTACW 2 cut(s) 26, 669
TauI GCSGC 3 cut(s) 190, 622, 700
TfiI GAWTC 2 cut(s) 216, 441
TscAI CASTG 2 cut(s) 189, 697
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 56
TspRI CASTG 2 cut(s) 189, 697
VpaK11BI GGWCC 5 cut(s) 300, 316, 424, 469, 723
XapI RAATTY 1 cut(s) 548
XmaJI CCTAGG 1 cut(s) 581
XmiI GTMKAC 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 2 cut(s) 351, 582
ZrmI AGTACT 2 cut(s) 28, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.