MD13G1106800.v1.1

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0014962
Physical Location & Seq
Forward (+)
7657808 .. 7658620
813 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1106800.v1.1.491

Sequence Viewer

Length: 813 bp
ATGAAGAACAACACTCCGACTTTCAAATACTTGCTCCTCTCTCTCCTCCTCACTCTTCCTATTCTCCTTCTCGTCCTCCGTCTCCAACCCCACAACCTCTACTGGACCACCGCCGCCGCCACACACGATATCACCCTCCCGGCTATACAAGCCGAATCCCAACAAGAAACAGAAACCAACAACACATCTACCAAAGACATCCGAATCCGACCAGGCTACACCTCCTACGAAGCATACCTCGAGCGGCAGGTCAACAAAACCAACAACCCTAGGCTCCGCCAGTTATGGACTACCCGCGACTGGGACCGCAAAATCCAAGTCTTCTCTCAAGTCTTCCAACAAATGAAGCTCCAGAACCTCCTCACCGACGACTCCAAGGCCCTATGCATCGGGGCCAGAGTCGGCCAGGAGGTTGAGGCCTTAAAGCGAGTCGGGGTGTCCGACTCGATTGGCATCGACCTTGTACCCTTCCCTCCGCTCGTGGTCAAGGGAGACTTCCACAACCAGCCGTTCGGCAAAGACATCTTCGACTTCGAGTTCTCGAACGTATTCGACCACGCGCTGTACCCGCGGAAGTTCGTTGCGGAGATCGAACGGACGTTGAGGCCCGGCGGGGTCTGCGTTTTACACGTGGCGATCGCGCGGCGGACAGATAAGTACTCAGCGAATGATCTGTATAGTGTGAAGCCGTTGGTGGCGATGTTTCGGAGAAGCGAGTTGGTTCATGTCAAGGAGGTTGACGGTTTTGGGGCCAACACGGAGGTGGTTTTTCGGAAACGGCAAAACGGTAGCCCATCCAACGGCCCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

271

Amino Acids

30.79

Weight (kDa)

9.15

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_11 PF08241 128 - 209 5.1e-08 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24480 AT4G24805
fragaria_vesca FvH4_4g25070
malus_domestica MD13G1106800.v1.1 MD16G1106900.v1.1
prunus_persica Prupe.1G239500_v2.0.a1
pyrus_communis pycom13g09260
rosa_chinensis RchiOBHm_Chr4g0432251
rosa_laevigata RLG00000006859
rosa_multiflora Rmu_co8384597.1_g000001
rosa_roxburghii Rroxscaffold_5G00373700
rosa_rugosa Rorug04G0255600
rosa_samantha Rh4BG320200 Rh4CG335400 Rh4DG315600
rosa_wichuraiana Rw4G027180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AccBSI CCGCTC 2 cut(s) 244, 478
AccII CGCG 5 cut(s) 297, 560, 571, 641, 643
AcoI YGGCCR 1 cut(s) 403
AcvI CACGTG 1 cut(s) 631
AfaI GTAC 3 cut(s) 465, 566, 659
AfiI CCNNNNNNNGG 3 cut(s) 300, 301, 800
AflIII ACRYGT 1 cut(s) 628
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 2 cut(s) 211, 405
AleI CACNNNNGTG 1 cut(s) 761
AluBI AGCT 1 cut(s) 349
AluI AGCT 1 cut(s) 349
Alw26I GTCTC 2 cut(s) 86, 486
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 7 cut(s) 378, 393, 403, 417, 605, 750, 802
ArsI GACNNNNNNTTYG 2 cut(s) 303, 335
AsiSI GCGATCGC 1 cut(s) 639
Asp700I GAANNNNTTC 1 cut(s) 548
AspA2I CCTAGG 1 cut(s) 269
AspLEI GCGC 2 cut(s) 562, 643
AspS9I GGNCC 7 cut(s) 105, 304, 379, 393, 606, 750, 803
AsuC2I CCSGG 2 cut(s) 140, 609
AsuHPI GGTGA 2 cut(s) 124, 355
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 2 cut(s) 105, 304
AvrII CCTAGG 1 cut(s) 269
BauI CACGAG 1 cut(s) 479
BbrPI CACGTG 1 cut(s) 631
BbsI GAAGAC 2 cut(s) 313, 325
BccI CCATC 1 cut(s) 802
BceAI ACGGC 3 cut(s) 493, 673, 794
BciT130I CCWGG 2 cut(s) 213, 407
BcnI CCSGG 2 cut(s) 140, 609
BcoDI GTCTC 2 cut(s) 86, 486
BfaI CTAG 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 4 cut(s) 114, 117, 245, 644
BlnI CCTAGG 1 cut(s) 269
BlsI GCNGC 4 cut(s) 115, 118, 246, 645
BmcAI AGTACT 1 cut(s) 659
Bme1390I CCNGG 4 cut(s) 140, 213, 407, 609
Bme18I GGWCC 2 cut(s) 105, 304
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 7 cut(s) 105, 304, 379, 393, 606, 750, 803
BmiI GGNNCC 4 cut(s) 275, 305, 394, 751
BmrFI CCNGG 4 cut(s) 140, 213, 407, 609
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 2 cut(s) 396, 462
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 2 cut(s) 313, 325
BpmI CTGGAG 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 312
BpuMI CCSGG 2 cut(s) 140, 609
BsaAI YACGTR 1 cut(s) 631
BsaBI GATNNNNATC 1 cut(s) 452
BsaJI CCNNGG 3 cut(s) 269, 375, 569
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 301, 800
Bse1I ACTGG 3 cut(s) 107, 280, 305
Bse8I GATNNNNATC 1 cut(s) 452
BseBI CCWGG 2 cut(s) 213, 407
BseDI CCNNGG 3 cut(s) 269, 375, 569
BseGI GGATG 2 cut(s) 198, 794
BseJI GATNNNNATC 1 cut(s) 452
BseLI CCNNNNNNNGG 3 cut(s) 300, 301, 800
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 3 cut(s) 107, 280, 305
BseRI GAGGAG 4 cut(s) 26, 35, 38, 350
Bsh1236I CGCG 5 cut(s) 297, 560, 571, 641, 643
Bsh1285I CGRYCG 1 cut(s) 639
BshFI GGCC 7 cut(s) 380, 395, 405, 419, 607, 752, 804
BsiEI CGRYCG 1 cut(s) 639
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 2 cut(s) 140, 609
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 3 cut(s) 300, 301, 800
BsmAI GTCTC 2 cut(s) 86, 486
BsmBI CGTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 7 cut(s) 380, 395, 405, 419, 607, 752, 804
BsoBI CYCGRG 1 cut(s) 239
Bsp143I GATC 3 cut(s) 588, 636, 670
BspANI GGCC 7 cut(s) 380, 395, 405, 419, 607, 752, 804
BspCNI CTCAG 1 cut(s) 674
BspFNI CGCG 5 cut(s) 297, 560, 571, 641, 643
BspLI GGNNCC 4 cut(s) 275, 305, 394, 751
BspMI ACCTGC 1 cut(s) 238
BsrBI CCGCTC 2 cut(s) 244, 478
BsrI ACTGG 3 cut(s) 107, 280, 305
BssECI CCNNGG 3 cut(s) 269, 375, 569
BssMI GATC 3 cut(s) 588, 636, 670
BssSI CACGAG 1 cut(s) 479
BssT1I CCWWGG 2 cut(s) 269, 375
Bst2BI CACGAG 1 cut(s) 479
Bst2UI CCWGG 2 cut(s) 213, 407
Bst4CI ACNGT 2 cut(s) 743, 788
Bst6I CTCTTC 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 631
BstDEI CTNAG 1 cut(s) 661
BstDSI CCRYGG 1 cut(s) 569
BstF5I GGATG 2 cut(s) 198, 794
BstFNI CGCG 5 cut(s) 297, 560, 571, 641, 643
BstHHI GCGC 2 cut(s) 562, 643
BstKTI GATC 3 cut(s) 591, 639, 673
BstMAI GTCTC 2 cut(s) 86, 486
BstMBI GATC 3 cut(s) 588, 636, 670
BstMCI CGRYCG 1 cut(s) 639
BstMWI GCNNNNNNNGC 3 cut(s) 149, 568, 618
BstNI CCWGG 2 cut(s) 213, 407
BstSCI CCNGG 4 cut(s) 138, 211, 405, 607
BstUI CGCG 5 cut(s) 297, 560, 571, 641, 643
BstV2I GAAGAC 2 cut(s) 313, 325
BsuRI GGCC 7 cut(s) 380, 395, 405, 419, 607, 752, 804
BtgI CCRYGG 1 cut(s) 569
BtgZI GCGATG 1 cut(s) 713
BtsCI GGATG 2 cut(s) 198, 794
BveI ACCTGC 1 cut(s) 238
CfoI GCGC 2 cut(s) 562, 643
Cfr13I GGNCC 7 cut(s) 105, 304, 379, 393, 606, 750, 803
Cfr42I CCGCGG 1 cut(s) 572
Csp6I GTAC 3 cut(s) 464, 565, 658
CviAII CATG 1 cut(s) 725
CviQI GTAC 3 cut(s) 464, 565, 658
DdeI CTNAG 1 cut(s) 661
DpnI GATC 3 cut(s) 590, 638, 672
DpnII GATC 3 cut(s) 588, 636, 670
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
EciI GGCGGA 2 cut(s) 266, 661
Eco130I CCWWGG 2 cut(s) 269, 375
Eco147I AGGCCT 1 cut(s) 419
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 2 cut(s) 105, 304
Eco72I CACGTG 1 cut(s) 631
Eco88I CYCGRG 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 379
EcoRII CCWGG 2 cut(s) 211, 405
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 2 cut(s) 269, 375
EcoT22I ATGCAT 1 cut(s) 389
ErhI CCWWGG 2 cut(s) 269, 375
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 1 cut(s) 728
FaiI YATR 6 cut(s) 146, 235, 286, 385, 678, 726
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FaqI GGGAC 1 cut(s) 317
FatI CATG 1 cut(s) 724
FauI CCCGC 3 cut(s) 302, 576, 605
Fnu4HI GCNGC 4 cut(s) 114, 117, 245, 644
FokI GGATG 2 cut(s) 185, 781
Fsp4HI GCNGC 4 cut(s) 114, 117, 245, 644
FspBI CTAG 1 cut(s) 270
GlaI GCGC 2 cut(s) 561, 642
GluI GCNGC 4 cut(s) 114, 117, 245, 644
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 7 cut(s) 380, 395, 405, 419, 607, 752, 804
HapII CCGG 2 cut(s) 140, 609
HhaI GCGC 2 cut(s) 562, 643
Hin1II CATG 1 cut(s) 728
Hin6I GCGC 2 cut(s) 560, 641
HinP1I GCGC 2 cut(s) 560, 641
HincII GTYRAC 2 cut(s) 253, 739
HindII GTYRAC 2 cut(s) 253, 739
HinfI GANTC 6 cut(s) 155, 204, 371, 399, 429, 443
HpaII CCGG 2 cut(s) 140, 609
HphI GGTGA 2 cut(s) 124, 355
Hpy166II GTNNAC 2 cut(s) 253, 739
Hpy188I TCNGA 6 cut(s) 18, 203, 209, 442, 708, 774
Hpy188III TCNNGA 2 cut(s) 352, 541
Hpy8I GTNNAC 2 cut(s) 253, 739
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 2 cut(s) 77, 478
HpyCH4III ACNGT 2 cut(s) 743, 788
HpyCH4IV ACGT 3 cut(s) 546, 599, 630
HpyCH4V TGCA 1 cut(s) 387
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 568, 618
HpyF3I CTNAG 1 cut(s) 661
HpySE526I ACGT 3 cut(s) 546, 599, 630
Hsp92II CATG 1 cut(s) 728
HspAI GCGC 2 cut(s) 560, 641
KspI CCGCGG 1 cut(s) 572
Kzo9I GATC 3 cut(s) 588, 636, 670
LmnI GCTCC 3 cut(s) 39, 279, 354
LweI GCATC 2 cut(s) 396, 462
MaeI CTAG 1 cut(s) 270
MaeII ACGT 3 cut(s) 546, 599, 630
MalI GATC 3 cut(s) 590, 638, 672
MbiI CCGCTC 2 cut(s) 244, 478
MboI GATC 3 cut(s) 588, 636, 670
MboII GAAGA 5 cut(s) 16, 47, 313, 325, 517
MlyI GAGTC 4 cut(s) 365, 408, 437, 438
MmeI TCCRAC 5 cut(s) 41, 109, 232, 361, 465
Mph1103I ATGCAT 1 cut(s) 389
MroXI GAANNNNTTC 1 cut(s) 548
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 1 cut(s) 761
MspA1I CMGCKG 1 cut(s) 571
MspI CCGG 2 cut(s) 140, 609
MspR9I CCNGG 4 cut(s) 140, 213, 407, 609
MvaI CCWGG 2 cut(s) 213, 407
MvnI CGCG 5 cut(s) 297, 560, 571, 641, 643
MwoI GCNNNNNNNGC 3 cut(s) 149, 568, 618
NciI CCSGG 2 cut(s) 140, 609
NdeII GATC 3 cut(s) 588, 636, 670
NlaIII CATG 1 cut(s) 728
NlaIV GGNNCC 4 cut(s) 275, 305, 394, 751
NsiI ATGCAT 1 cut(s) 389
OliI CACNNNNGTG 1 cut(s) 761
PaeR7I CTCGAG 1 cut(s) 239
PceI AGGCCT 1 cut(s) 419
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 2 cut(s) 155, 204
PkrI GCNGC 4 cut(s) 115, 118, 246, 645
Ple19I CGATCG 1 cut(s) 639
PleI GAGTC 4 cut(s) 365, 407, 437, 437
PmaCI CACGTG 1 cut(s) 631
PmlI CACGTG 1 cut(s) 631
PpsI GAGTC 4 cut(s) 365, 407, 437, 437
Ppu21I YACGTR 1 cut(s) 631
Psp6I CCWGG 2 cut(s) 211, 405
PspCI CACGTG 1 cut(s) 631
PspGI CCWGG 2 cut(s) 211, 405
PspN4I GGNNCC 4 cut(s) 275, 305, 394, 751
PspPI GGNCC 7 cut(s) 105, 304, 379, 393, 606, 750, 803
PspXI VCTCGAGB 1 cut(s) 239
PvuI CGATCG 1 cut(s) 639
RgaI GCGATCGC 1 cut(s) 639
RsaI GTAC 3 cut(s) 465, 566, 659
RsaNI GTAC 3 cut(s) 464, 565, 658
RseI CAYNNNNRTG 1 cut(s) 761
SacII CCGCGG 1 cut(s) 572
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 4 cut(s) 114, 117, 245, 644
Sau3AI GATC 3 cut(s) 588, 636, 670
Sau96I GGNCC 7 cut(s) 105, 304, 379, 393, 606, 750, 803
ScaI AGTACT 1 cut(s) 659
SchI GAGTC 4 cut(s) 365, 408, 437, 438
ScrFI CCNGG 4 cut(s) 140, 213, 407, 609
SfaAI GCGATCGC 1 cut(s) 639
SfaNI GCATC 2 cut(s) 396, 462
Sfr274I CTCGAG 1 cut(s) 239
Sfr303I CCGCGG 1 cut(s) 572
SgfI GCGATCGC 1 cut(s) 639
SgrBI CCGCGG 1 cut(s) 572
SinI GGWCC 2 cut(s) 105, 304
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 761
SmlI CTYRAG 2 cut(s) 239, 327
SmoI CTYRAG 2 cut(s) 239, 327
SseBI AGGCCT 1 cut(s) 419
SspMI CTAG 1 cut(s) 270
StuI AGGCCT 1 cut(s) 419
StyD4I CCNGG 4 cut(s) 138, 211, 405, 607
StyI CCWWGG 2 cut(s) 269, 375
TaaI ACNGT 2 cut(s) 743, 788
TaiI ACGT 3 cut(s) 549, 602, 633
TaqI TCGA 8 cut(s) 240, 446, 456, 528, 534, 542, 552, 591
TatI WGTACW 1 cut(s) 657
TauI GCSGC 4 cut(s) 116, 119, 247, 646
TfiI GAWTC 2 cut(s) 155, 204
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TspDTI ATGAA 3 cut(s) 17, 359, 713
TspGWI ACGGA 3 cut(s) 68, 610, 773
VpaK11BI GGWCC 2 cut(s) 105, 304
XcmI CCANNNNNNNNNTGG 1 cut(s) 760
XhoI CTCGAG 1 cut(s) 239
XmaJI CCTAGG 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 1 cut(s) 270
ZrmI AGTACT 1 cut(s) 659
Zsp2I ATGCAT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.