AT4G24805
ERF Family

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014962
Physical Location & Seq
Forward (+)
12785226 .. 12786249
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24805.1

Sequence Viewer

Length: 744 bp
ATGAAATTCGTAATACCAAAACTACCCTTCACACTCTCTCTCTTCCTCTCCCTCTCTTTTCTCATCATCTTCCTCTTCGCCTTCCCCACCACATTCCTCCGCCGTCCTCTCTCCTCCTCTTCCTCCGTCACCTCCGTTGCCGACGAAGGAATACGGATCCGTCACCATGGATACTCCTCCTACGAAGCATACATCAAACACCAGCTCAACAAAACTCAGAACCCGAAGCTACGTAAGGTATGGACAACGCGCGACTGGGACAGGAAAGTTCGTGTGTTCTCCACTTTCTTCCGACGTCTCAGCGATCGCGGTCTTCTCTCAAATCAATCAAAAGCTCTCTCGATCGGTGCTCGGGTTGGACAAGAGGTTGCGGCGTTGAGATTGATCGGCGTGGAAGACTCCGTCGGAATAGATCTGGTTCCGCGACCACCTCTCGTGGTGAAAGGTGACTTCCACGCGCAGCCGTTCGACGAAGAGACATTCGATTTCGAATTCTCAAACGTGTTCGATCACGCGCTTTACCCGGAGAAGTTCGTTGGGGAGATCGAACGGACTTTAAAGCCCGGAGGGGTGTGTGTGTTACACGTGTCGATATCTGGGAAGACGGATAAGTACTCGGCTAACGATTTGCTTAGTGTGAAACCATTGGTGAAATTGTTTAAGAGATCCAAGGTTGTGGAGATGAGGAAGATCGATGGGTTTGGGCTTGACACTGAGATTGTTTTTAGAAAGAACATGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

247

Amino Acids

28.16

Weight (kDa)

9.78

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_23 PF13489 95 - 197 6.9e-06 Methyltransferase domain
Methyltransf_11 PF08241 114 - 194 2e-09 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24480 AT4G24805
fragaria_vesca FvH4_4g25070
malus_domestica MD13G1106800.v1.1 MD16G1106900.v1.1
prunus_persica Prupe.1G239500_v2.0.a1
pyrus_communis pycom13g09260
rosa_chinensis RchiOBHm_Chr4g0432251
rosa_laevigata RLG00000006859
rosa_multiflora Rmu_co8384597.1_g000001
rosa_roxburghii Rroxscaffold_5G00373700
rosa_rugosa Rorug04G0255600
rosa_samantha Rh4BG320200 Rh4CG335400 Rh4DG315600
rosa_wichuraiana Rw4G027180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 298
AccII CGCG 6 cut(s) 250, 252, 309, 424, 458, 515
AciI CCGC 4 cut(s) 100, 309, 371, 422
AclWI GGATC 3 cut(s) 151, 164, 660
AcsI RAATTY 2 cut(s) 5, 491
AcvI CACGTG 1 cut(s) 586
AcyI GRCGYC 1 cut(s) 295
AfaI GTAC 1 cut(s) 614
AflIII ACRYGT 3 cut(s) 501, 583, 585
AluBI AGCT 3 cut(s) 205, 229, 335
AluI AGCT 3 cut(s) 205, 229, 335
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 2 cut(s) 302, 470
AlwI GGATC 3 cut(s) 151, 164, 660
Ama87I CYCGRG 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 460
ApoI RAATTY 2 cut(s) 5, 491
AsiSI GCGATCGC 1 cut(s) 307
AspLEI GCGC 3 cut(s) 252, 460, 517
AsuC2I CCSGG 2 cut(s) 524, 564
AsuHPI GGTGA 5 cut(s) 121, 155, 451, 458, 661
AsuII TTCGAA 1 cut(s) 489
AvaI CYCGRG 1 cut(s) 351
BamHI GGATCC 1 cut(s) 156
BauI CACGAG 1 cut(s) 434
BbrPI CACGTG 1 cut(s) 586
BbsI GAAGAC 3 cut(s) 305, 402, 608
Bbv12I GWGCWC 1 cut(s) 352
BbvI GCAGC 1 cut(s) 472
BccI CCATC 1 cut(s) 689
BceAI ACGGC 2 cut(s) 87, 448
BciVI GTATCC 1 cut(s) 164
BcnI CCSGG 2 cut(s) 524, 564
BcoDI GTCTC 2 cut(s) 302, 470
BfuI GTATCC 1 cut(s) 164
BglII AGATCT 1 cut(s) 412
BisI GCNGC 2 cut(s) 372, 461
BlsI GCNGC 2 cut(s) 373, 462
BmcAI AGTACT 1 cut(s) 614
Bme1390I CCNGG 2 cut(s) 524, 564
BmeT110I CYCGRG 1 cut(s) 351
BmiI GGNNCC 2 cut(s) 158, 420
BmrFI CCNGG 2 cut(s) 524, 564
BmrI ACTGGG 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 265
BpiI GAAGAC 3 cut(s) 305, 402, 608
Bpu14I TTCGAA 1 cut(s) 489
BpuMI CCSGG 2 cut(s) 524, 564
Bsa29I ATCGAT 1 cut(s) 693
BsaAI YACGTR 2 cut(s) 233, 586
BsaHI GRCGYC 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 166, 669
Bse1I ACTGG 1 cut(s) 260
BseCI ATCGAT 1 cut(s) 693
BseDI CCNNGG 2 cut(s) 166, 669
BseMII CTCAG 3 cut(s) 230, 313, 705
BseNI ACTGG 1 cut(s) 260
BseRI GAGGAG 3 cut(s) 103, 106, 166
BseXI GCAGC 1 cut(s) 472
Bsh1236I CGCG 6 cut(s) 250, 252, 309, 424, 458, 515
Bsh1285I CGRYCG 2 cut(s) 307, 345
BshVI ATCGAT 1 cut(s) 693
BsiEI CGRYCG 2 cut(s) 307, 345
BsiHKAI GWGCWC 1 cut(s) 352
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 2 cut(s) 524, 564
BslFI GGGAC 1 cut(s) 272
BsmAI GTCTC 2 cut(s) 302, 470
BsmBI CGTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 351
Bsp119I TTCGAA 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 9 cut(s) 156, 304, 342, 384, 412, 508, 543, 665, 690
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 4 cut(s) 100, 309, 371, 422
BspCNI CTCAG 3 cut(s) 229, 312, 706
BspDI ATCGAT 1 cut(s) 693
BspFNI CGCG 6 cut(s) 250, 252, 309, 424, 458, 515
BspLI GGNNCC 2 cut(s) 158, 420
BspPI GGATC 3 cut(s) 151, 164, 660
BspT104I TTCGAA 1 cut(s) 489
BsrI ACTGG 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 166, 669
BssMI GATC 9 cut(s) 156, 304, 342, 384, 412, 508, 543, 665, 690
BssNI GRCGYC 1 cut(s) 295
BssSI CACGAG 1 cut(s) 434
BssT1I CCWWGG 2 cut(s) 166, 669
Bst2BI CACGAG 1 cut(s) 434
Bst6I CTCTTC 4 cut(s) 47, 80, 124, 468
BstACI GRCGYC 1 cut(s) 295
BstBAI YACGTR 2 cut(s) 233, 586
BstBI TTCGAA 1 cut(s) 489
BstDEI CTNAG 4 cut(s) 216, 299, 632, 714
BstDSI CCRYGG 1 cut(s) 166
BstFNI CGCG 6 cut(s) 250, 252, 309, 424, 458, 515
BstHHI GCGC 3 cut(s) 252, 460, 517
BstKTI GATC 9 cut(s) 159, 307, 345, 387, 415, 511, 546, 668, 693
BstMAI GTCTC 2 cut(s) 302, 470
BstMBI GATC 9 cut(s) 156, 304, 342, 384, 412, 508, 543, 665, 690
BstMCI CGRYCG 2 cut(s) 307, 345
BstSCI CCNGG 2 cut(s) 522, 562
BstSNI TACGTA 1 cut(s) 233
BstUI CGCG 6 cut(s) 250, 252, 309, 424, 458, 515
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 3 cut(s) 305, 402, 608
BstX2I RGATCY 3 cut(s) 156, 412, 665
BstXI CCANNNNNNTGG 1 cut(s) 676
BstYI RGATCY 3 cut(s) 156, 412, 665
Bsu15I ATCGAT 1 cut(s) 693
BsuI GTATCC 1 cut(s) 164
BsuTUI ATCGAT 1 cut(s) 693
BtgI CCRYGG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 711
CfoI GCGC 3 cut(s) 252, 460, 517
ClaI ATCGAT 1 cut(s) 693
Csp6I GTAC 1 cut(s) 613
CviAII CATG 2 cut(s) 167, 736
CviJI RGCY 7 cut(s) 205, 229, 335, 463, 562, 620, 706
CviKI_1 RGCY 7 cut(s) 205, 229, 335, 463, 562, 620, 706
CviQI GTAC 1 cut(s) 613
DdeI CTNAG 4 cut(s) 216, 299, 632, 714
DpnI GATC 9 cut(s) 158, 306, 344, 386, 414, 510, 545, 667, 692
DpnII GATC 9 cut(s) 156, 304, 342, 384, 412, 508, 543, 665, 690
DraI TTTAAA 1 cut(s) 558
Eam1104I CTCTTC 4 cut(s) 47, 80, 124, 468
EarI CTCTTC 4 cut(s) 47, 80, 124, 468
EciI GGCGGA 1 cut(s) 89
Eco105I TACGTA 1 cut(s) 233
Eco130I CCWWGG 2 cut(s) 166, 669
Eco32I GATATC 1 cut(s) 594
Eco72I CACGTG 1 cut(s) 586
Eco88I CYCGRG 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 491
EcoRV GATATC 1 cut(s) 594
EcoT14I CCWWGG 2 cut(s) 166, 669
ErhI CCWWGG 2 cut(s) 166, 669
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 2 cut(s) 170, 739
FaiI YATR 4 cut(s) 168, 190, 241, 737
FaqI GGGAC 1 cut(s) 272
FatI CATG 2 cut(s) 166, 735
Fnu4HI GCNGC 2 cut(s) 372, 461
Fsp4HI GCNGC 2 cut(s) 372, 461
GlaI GCGC 3 cut(s) 251, 459, 516
GluI GCNGC 2 cut(s) 372, 461
HapII CCGG 2 cut(s) 524, 564
HhaI GCGC 3 cut(s) 252, 460, 517
Hin1I GRCGYC 1 cut(s) 295
Hin1II CATG 2 cut(s) 170, 739
Hin6I GCGC 3 cut(s) 250, 458, 515
HinP1I GCGC 3 cut(s) 250, 458, 515
HinfI GANTC 1 cut(s) 398
HpaII CCGG 2 cut(s) 524, 564
HphI GGTGA 5 cut(s) 121, 155, 451, 458, 661
Hpy188I TCNGA 3 cut(s) 219, 293, 407
Hpy188III TCNNGA 1 cut(s) 340
Hpy99I CGWCG 4 cut(s) 146, 297, 407, 473
HpyAV CCTTC 3 cut(s) 37, 91, 140
HpyCH4IV ACGT 4 cut(s) 232, 295, 501, 585
HpyF3I CTNAG 4 cut(s) 216, 299, 632, 714
HpySE526I ACGT 4 cut(s) 232, 295, 501, 585
Hsp92I GRCGYC 1 cut(s) 295
Hsp92II CATG 2 cut(s) 170, 739
HspAI GCGC 3 cut(s) 250, 458, 515
Kzo9I GATC 9 cut(s) 156, 304, 342, 384, 412, 508, 543, 665, 690
LpnPI CCDG 7 cut(s) 215, 241, 247, 401, 537, 577, 582
Lsp1109I GCAGC 1 cut(s) 472
MaeII ACGT 4 cut(s) 232, 295, 501, 585
MaeIII GTNAC 4 cut(s) 127, 161, 446, 579
MalI GATC 9 cut(s) 158, 306, 344, 386, 414, 510, 545, 667, 692
MboI GATC 9 cut(s) 156, 304, 342, 384, 412, 508, 543, 665, 690
MflI RGATCY 3 cut(s) 156, 412, 665
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 3 cut(s) 5, 491, 653
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 3 cut(s) 316, 337, 385
MseI TTAA 2 cut(s) 557, 660
MspI CCGG 2 cut(s) 524, 564
MspR9I CCNGG 2 cut(s) 524, 564
MvnI CGCG 6 cut(s) 250, 252, 309, 424, 458, 515
NciI CCSGG 2 cut(s) 524, 564
NcoI CCATGG 1 cut(s) 166
NdeII GATC 9 cut(s) 156, 304, 342, 384, 412, 508, 543, 665, 690
NlaIII CATG 2 cut(s) 170, 739
NlaIV GGNNCC 2 cut(s) 158, 420
NmeAIII GCCGAG 1 cut(s) 596
NmuCI GTSAC 3 cut(s) 127, 161, 446
NspV TTCGAA 1 cut(s) 489
PflFI GACNNNGTC 1 cut(s) 401
PkrI GCNGC 2 cut(s) 373, 462
Ple19I CGATCG 2 cut(s) 307, 345
PleI GAGTC 1 cut(s) 392
PmaCI CACGTG 1 cut(s) 586
PmlI CACGTG 1 cut(s) 586
PpsI GAGTC 1 cut(s) 392
Ppu21I YACGTR 2 cut(s) 233, 586
PspCI CACGTG 1 cut(s) 586
PspN4I GGNNCC 2 cut(s) 158, 420
PsuI RGATCY 3 cut(s) 156, 412, 665
PsyI GACNNNGTC 1 cut(s) 401
PvuI CGATCG 2 cut(s) 307, 345
RgaI GCGATCGC 1 cut(s) 307
RsaI GTAC 1 cut(s) 614
RsaNI GTAC 1 cut(s) 613
SaqAI TTAA 2 cut(s) 557, 660
SatI GCNGC 2 cut(s) 372, 461
Sau3AI GATC 9 cut(s) 156, 304, 342, 384, 412, 508, 543, 665, 690
ScaI AGTACT 1 cut(s) 614
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 2 cut(s) 524, 564
SduI GDGCHC 1 cut(s) 352
SfaAI GCGATCGC 1 cut(s) 307
SfuI TTCGAA 1 cut(s) 489
SgfI GCGATCGC 1 cut(s) 307
SnaBI TACGTA 1 cut(s) 233
Sse9I AATT 3 cut(s) 5, 491, 653
SsiI CCGC 4 cut(s) 100, 309, 371, 422
StyD4I CCNGG 2 cut(s) 522, 562
StyI CCWWGG 2 cut(s) 166, 669
TaiI ACGT 4 cut(s) 235, 298, 504, 588
TaqI TCGA 8 cut(s) 341, 468, 483, 489, 507, 546, 590, 693
TasI AATT 3 cut(s) 5, 491, 653
TatI WGTACW 1 cut(s) 612
TauI GCSGC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 557, 660
Tru9I TTAA 2 cut(s) 557, 660
TscAI CASTG 1 cut(s) 718
TseFI GTSAC 3 cut(s) 127, 161, 446
TseI GCWGC 1 cut(s) 460
Tsp45I GTSAC 3 cut(s) 127, 161, 446
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 7 cut(s) 115, 124, 149, 169, 391, 565, 620
TspRI CASTG 1 cut(s) 718
Tth111I GACNNNGTC 1 cut(s) 401
XapI RAATTY 2 cut(s) 5, 491
ZraI GACGTC 1 cut(s) 296
ZrmI AGTACT 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.