Rroxscaffold_5G00373700

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014962
Physical Location & Seq
Reverse (-)
54853408 .. 54854950
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00373700.1

Sequence Viewer

Length: 969 bp
ATGAAAACAAGCACTCATCCACCAAAACGACGAGTCACTTTCAAATACATAACGTTGCTCTCTTCCTTCCTCTTCCTCCCTGTTCTCTATCTTTTCCTTCACGTCAAGCACAACCTCCACCCCACTGCCATAGTCGACCACTCACTGCCGCACAACGTTCAAGTCCCCGACATCCGAATCCGCTCGGGCTACACCTCCTACAAGACCTACCTCCAGCACCAGCTCAACAAGACCCTCAACCCTAAACTCCGCAAAGTCTGGACCACCCGCGACTGGGACCGCAAAATCCAGGTCTTCTCCAAGATTTTCACTCGGTTGAAGCAGGAAAAACTCCTGTCAAATAACTCTCGGGCGCTGTGTATTGGCGCCCGAGTAGGGCAAGAGGTCCAAGCTCTCAAACGAATCGGGGTGAATGACTCGGTCGGGATGGACCTCGTGCCCTACCCTCCGCTGGTTGTGGAGGGAGACTTTCACAGCCAGCCTTTTCAGAACGAGACGTTCGACTTCGAATTCTCGAACGTGTTTGATCACGCGCTGTACCCTAGGAAGTTCGTGGCGGAGATCGAACGGACGTTGAGGCCGCGCGGGGTTTGTGTGTTACACGTGGCGATATCCAAGCGGGGGATAAGTACTCTGCCAACGACCTGTTCAGTGTGCGGCCATTGGTGGAGATGTTTCAGAGGTCCGAGTTGGTTTATGTCAGGAAGGTTGACGGGTTTGGGTTGGACACCGAGGTCGTCTTTCGGAAACGGGAAGTCAAACTCATCCAACAACGGTGACATTTCGATTCTTGTTTTTGTTTATTCAAAATCTGAATTTAGGAGAGTTTTGGTCGAAGATGTTATTGGTGTGATGAATATACCTAAGATTCTTGGACAAAAAGGAACACCTCGTGATGCCCTCCTATCAAGTGCCCTACAAACTCTCATCGAAAAAGAAAATCCCACAAAACTTCATTGGAAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

322

Amino Acids

36.93

Weight (kDa)

10.07

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_11 PF08241 119 - 200 5.9e-09 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24480 AT4G24805
fragaria_vesca FvH4_4g25070
malus_domestica MD13G1106800.v1.1 MD16G1106900.v1.1
prunus_persica Prupe.1G239500_v2.0.a1
pyrus_communis pycom13g09260
rosa_chinensis RchiOBHm_Chr4g0432251
rosa_laevigata RLG00000006859
rosa_multiflora Rmu_co8384597.1_g000001
rosa_roxburghii Rroxscaffold_5G00373700
rosa_rugosa Rorug04G0255600
rosa_samantha Rh4BG320200 Rh4CG335400 Rh4DG315600
rosa_wichuraiana Rw4G027180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 733
AccB1I GGYRCC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 135
AccII CGCG 4 cut(s) 270, 533, 583, 585
AclI AACGTT 2 cut(s) 53, 156
AcoI YGGCCR 1 cut(s) 658
AcsI RAATTY 3 cut(s) 509, 815, 962
AcvI CACGTG 1 cut(s) 604
AcyI GRCGYC 1 cut(s) 366
AdeI CACNNNGTG 1 cut(s) 893
AfaI GTAC 2 cut(s) 539, 631
AfiI CCNNNNNNNGG 5 cut(s) 273, 274, 375, 451, 621
AflIII ACRYGT 2 cut(s) 519, 601
AgsI TTSAA 4 cut(s) 43, 161, 319, 807
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 288
AjuI GAANNNNNNNTTGG 4 cut(s) 631, 663, 828, 860
AluBI AGCT 2 cut(s) 223, 392
AluI AGCT 2 cut(s) 223, 392
Alw26I GTCTC 2 cut(s) 459, 488
Ama87I CYCGRG 3 cut(s) 184, 348, 369
AoxI GGCC 2 cut(s) 578, 658
ApoI RAATTY 3 cut(s) 509, 815, 962
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
AspA2I CCTAGG 1 cut(s) 542
AspLEI GCGC 4 cut(s) 355, 368, 535, 585
AspS9I GGNCC 5 cut(s) 261, 277, 385, 430, 683
AsuHPI GGTGA 2 cut(s) 421, 788
AsuII TTCGAA 1 cut(s) 507
AvaI CYCGRG 3 cut(s) 184, 348, 369
AvaII GGWCC 5 cut(s) 261, 277, 385, 430, 683
AvrII CCTAGG 1 cut(s) 542
BaeGI GKGCMC 2 cut(s) 441, 916
BanI GGYRCC 1 cut(s) 365
BauI CACGAG 2 cut(s) 434, 891
BbrPI CACGTG 1 cut(s) 604
BbsI GAAGAC 1 cut(s) 286
BccI CCATC 1 cut(s) 421
BciT130I CCWGG 1 cut(s) 290
BclI TGATCA 1 cut(s) 526
BcoDI GTCTC 2 cut(s) 459, 488
BfaI CTAG 1 cut(s) 543
BfoI RGCGCY 2 cut(s) 356, 369
BisI GCNGC 3 cut(s) 149, 581, 658
BlnI CCTAGG 1 cut(s) 542
BlsI GCNGC 3 cut(s) 150, 582, 659
BmcAI AGTACT 1 cut(s) 631
Bme1390I CCNGG 1 cut(s) 290
Bme18I GGWCC 5 cut(s) 261, 277, 385, 430, 683
BmeT110I CYCGRG 3 cut(s) 184, 348, 369
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 5 cut(s) 261, 277, 385, 430, 683
BmiI GGNNCC 2 cut(s) 278, 367
BmrFI CCNGG 1 cut(s) 290
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 886
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 197
Bpu14I TTCGAA 1 cut(s) 507
BsaAI YACGTR 1 cut(s) 604
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 2 cut(s) 542, 731
Bsc4I CCNNNNNNNGG 5 cut(s) 273, 274, 375, 451, 621
Bse1I ACTGG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 2 cut(s) 542, 731
BseGI GGATG 4 cut(s) 16, 171, 432, 764
BseLI CCNNNNNNNGG 5 cut(s) 273, 274, 375, 451, 621
BseNI ACTGG 1 cut(s) 278
BseSI GKGCMC 2 cut(s) 441, 916
Bsh1236I CGCG 4 cut(s) 270, 533, 583, 585
Bsh1285I CGRYCG 1 cut(s) 423
BshFI GGCC 2 cut(s) 580, 660
BshNI GGYRCC 1 cut(s) 365
BsiEI CGRYCG 1 cut(s) 423
BsiHKCI CYCGRG 3 cut(s) 184, 348, 369
BslFI GGGAC 2 cut(s) 149, 290
BslI CCNNNNNNNGG 5 cut(s) 273, 274, 375, 451, 621
BsmAI GTCTC 2 cut(s) 459, 488
BsmBI CGTCTC 1 cut(s) 488
BsmFI GGGAC 2 cut(s) 149, 290
BsnI GGCC 2 cut(s) 580, 660
BsoBI CYCGRG 3 cut(s) 184, 348, 369
Bsp119I TTCGAA 1 cut(s) 507
Bsp1286I GDGCHC 2 cut(s) 441, 916
Bsp143I GATC 2 cut(s) 526, 561
BspANI GGCC 2 cut(s) 580, 660
BspFNI CGCG 4 cut(s) 270, 533, 583, 585
BspLI GGNNCC 2 cut(s) 278, 367
BspT104I TTCGAA 1 cut(s) 507
BspT107I GGYRCC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 183
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 542, 731
BssMI GATC 2 cut(s) 526, 561
BssNI GRCGYC 1 cut(s) 366
BssSI CACGAG 2 cut(s) 434, 891
BssT1I CCWWGG 1 cut(s) 542
Bst2BI CACGAG 2 cut(s) 434, 891
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 776
Bst6I CTCTTC 2 cut(s) 67, 77
BstACI GRCGYC 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 604
BstBI TTCGAA 1 cut(s) 507
BstC8I GCNNGC 1 cut(s) 479
BstDEI CTNAG 1 cut(s) 864
BstF5I GGATG 4 cut(s) 16, 171, 432, 764
BstFNI CGCG 4 cut(s) 270, 533, 583, 585
BstH2I RGCGCY 2 cut(s) 356, 369
BstHHI GCGC 4 cut(s) 355, 368, 535, 585
BstKTI GATC 2 cut(s) 529, 564
BstMAI GTCTC 2 cut(s) 459, 488
BstMBI GATC 2 cut(s) 526, 561
BstMCI CGRYCG 1 cut(s) 423
BstNI CCWGG 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 288
BstSLI GKGCMC 2 cut(s) 441, 916
BstUI CGCG 4 cut(s) 270, 533, 583, 585
BstV2I GAAGAC 1 cut(s) 286
BsuRI GGCC 2 cut(s) 580, 660
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 4 cut(s) 16, 171, 432, 764
BtsI GCAGTG 2 cut(s) 123, 143
BtsIMutI CAGTG 3 cut(s) 123, 143, 657
Cac8I GCNNGC 1 cut(s) 479
CfoI GCGC 4 cut(s) 355, 368, 535, 585
Cfr13I GGNCC 5 cut(s) 261, 277, 385, 430, 683
Csp6I GTAC 2 cut(s) 538, 630
CviJI RGCY 7 cut(s) 189, 223, 392, 477, 481, 580, 660
CviKI_1 RGCY 7 cut(s) 189, 223, 392, 477, 481, 580, 660
CviQI GTAC 2 cut(s) 538, 630
DdeI CTNAG 1 cut(s) 864
DinI GGCGCC 1 cut(s) 367
DpnI GATC 2 cut(s) 528, 563
DpnII GATC 2 cut(s) 526, 561
DraIII CACNNNGTG 1 cut(s) 893
DrdI GACNNNNNNGTC 1 cut(s) 733
DseDI GACNNNNNNGTC 1 cut(s) 733
EaeI YGGCCR 1 cut(s) 658
Eam1104I CTCTTC 2 cut(s) 67, 77
EarI CTCTTC 2 cut(s) 67, 77
EciI GGCGGA 1 cut(s) 572
Eco130I CCWWGG 1 cut(s) 542
Eco32I GATATC 1 cut(s) 612
Eco47I GGWCC 5 cut(s) 261, 277, 385, 430, 683
Eco72I CACGTG 1 cut(s) 604
Eco88I CYCGRG 3 cut(s) 184, 348, 369
EcoRI GAATTC 1 cut(s) 509
EcoRII CCWGG 1 cut(s) 288
EcoRV GATATC 1 cut(s) 612
EcoT14I CCWWGG 1 cut(s) 542
EgeI GGCGCC 1 cut(s) 367
EheI GGCGCC 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 542
Esp3I CGTCTC 1 cut(s) 488
FaiI YATR 4 cut(s) 50, 131, 698, 860
FaqI GGGAC 2 cut(s) 149, 290
FauI CCCGC 3 cut(s) 275, 578, 612
FbaI TGATCA 1 cut(s) 526
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 149, 581, 658
FokI GGATG 4 cut(s) 3, 158, 439, 751
Fsp4HI GCNGC 3 cut(s) 149, 581, 658
FspBI CTAG 1 cut(s) 543
GlaI GCGC 4 cut(s) 354, 367, 534, 584
GluI GCNGC 3 cut(s) 149, 581, 658
GsuI CTGGAG 1 cut(s) 197
HaeII RGCGCY 2 cut(s) 356, 369
HaeIII GGCC 2 cut(s) 580, 660
HhaI GCGC 4 cut(s) 355, 368, 535, 585
Hin1I GRCGYC 1 cut(s) 366
Hin6I GCGC 4 cut(s) 353, 366, 533, 583
HinP1I GCGC 4 cut(s) 353, 366, 533, 583
HincII GTYRAC 2 cut(s) 136, 711
HindII GTYRAC 2 cut(s) 136, 711
HinfI GANTC 6 cut(s) 33, 177, 402, 416, 787, 868
HphI GGTGA 2 cut(s) 421, 788
Hpy166II GTNNAC 2 cut(s) 136, 711
Hpy188I TCNGA 6 cut(s) 176, 489, 680, 687, 746, 814
Hpy188III TCNNGA 5 cut(s) 259, 424, 514, 702, 893
Hpy8I GTNNAC 2 cut(s) 136, 711
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 3 cut(s) 76, 107, 699
HpyCH4III ACNGT 1 cut(s) 776
HpyCH4IV ACGT 7 cut(s) 53, 102, 156, 497, 519, 572, 603
HpyF3I CTNAG 1 cut(s) 864
HpySE526I ACGT 7 cut(s) 53, 102, 156, 497, 519, 572, 603
Hsp92I GRCGYC 1 cut(s) 366
HspAI GCGC 4 cut(s) 353, 366, 533, 583
KasI GGCGCC 1 cut(s) 365
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 2 cut(s) 526, 561
LweI GCATC 1 cut(s) 886
MaeI CTAG 1 cut(s) 543
MaeII ACGT 7 cut(s) 53, 102, 156, 497, 519, 572, 603
MaeIII GTNAC 3 cut(s) 34, 597, 776
MalI GATC 2 cut(s) 528, 563
MbiI CCGCTC 1 cut(s) 183
MboI GATC 2 cut(s) 526, 561
MboII GAAGA 4 cut(s) 54, 64, 286, 848
MhlI GDGCHC 2 cut(s) 441, 916
MluCI AATT 3 cut(s) 509, 815, 962
Mly113I GGCGCC 1 cut(s) 366
MlyI GAGTC 2 cut(s) 42, 410
MmeI TCCRAC 2 cut(s) 704, 792
MspA1I CMGCKG 1 cut(s) 451
MspR9I CCNGG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 4 cut(s) 270, 533, 583, 585
NarI GGCGCC 1 cut(s) 366
NdeII GATC 2 cut(s) 526, 561
NlaIV GGNNCC 2 cut(s) 278, 367
NmuCI GTSAC 2 cut(s) 34, 776
NspV TTCGAA 1 cut(s) 507
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PfeI GAWTC 4 cut(s) 177, 402, 787, 868
PflFI GACNNNGTC 1 cut(s) 419
PkrI GCNGC 3 cut(s) 150, 582, 659
PleI GAGTC 2 cut(s) 41, 410
PluTI GGCGCC 1 cut(s) 369
PmaCI CACGTG 1 cut(s) 604
PmlI CACGTG 1 cut(s) 604
PpsI GAGTC 2 cut(s) 41, 410
Ppu21I YACGTR 1 cut(s) 604
Psp1406I AACGTT 2 cut(s) 53, 156
Psp6I CCWGG 1 cut(s) 288
PspCI CACGTG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 278, 367
PspPI GGNCC 5 cut(s) 261, 277, 385, 430, 683
PsyI GACNNNGTC 1 cut(s) 419
RsaI GTAC 2 cut(s) 539, 631
RsaNI GTAC 2 cut(s) 538, 630
SalI GTCGAC 1 cut(s) 134
SatI GCNGC 3 cut(s) 149, 581, 658
Sau3AI GATC 2 cut(s) 526, 561
Sau96I GGNCC 5 cut(s) 261, 277, 385, 430, 683
ScaI AGTACT 1 cut(s) 631
SchI GAGTC 2 cut(s) 42, 410
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 2 cut(s) 441, 916
SfaNI GCATC 1 cut(s) 886
SfoI GGCGCC 1 cut(s) 367
SfuI TTCGAA 1 cut(s) 507
SinI GGWCC 5 cut(s) 261, 277, 385, 430, 683
Sse9I AATT 3 cut(s) 509, 815, 962
SspDI GGCGCC 1 cut(s) 365
SspMI CTAG 1 cut(s) 543
StyD4I CCNGG 1 cut(s) 288
StyI CCWWGG 1 cut(s) 542
TaaI ACNGT 1 cut(s) 776
TaiI ACGT 7 cut(s) 56, 105, 159, 500, 522, 575, 606
TaqI TCGA 8 cut(s) 135, 501, 507, 515, 564, 785, 834, 930
TaqII GACCGA 1 cut(s) 409
TasI AATT 3 cut(s) 509, 815, 962
TatI WGTACW 1 cut(s) 629
TauI GCSGC 3 cut(s) 151, 583, 660
TfiI GAWTC 4 cut(s) 177, 402, 787, 868
TscAI CASTG 3 cut(s) 130, 150, 657
TseFI GTSAC 2 cut(s) 34, 776
Tsp45I GTSAC 2 cut(s) 34, 776
TspDTI ATGAA 3 cut(s) 17, 869, 944
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 3 cut(s) 130, 150, 657
Tth111I GACNNNGTC 1 cut(s) 419
VpaK11BI GGWCC 5 cut(s) 261, 277, 385, 430, 683
XapI RAATTY 3 cut(s) 509, 815, 962
XmaJI CCTAGG 1 cut(s) 542
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 543
ZrmI AGTACT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.