Rmu_co8384597.1_g000001

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8384597.1
OG0014962
Physical Location & Seq
Reverse (-)
17 .. 844
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8384597.1_g000001.1.cds

Sequence Viewer

Length: 828 bp
atgactctcataactcccacacaaaggaaaaccagtactcccacatacatgaaaacaagcactcatccaccaaaacgacgagtcactttcaaatacataacgttgctctcttccttcctcttcctccctgtcctctatttcttccttcacgtcaagcacaacctccaccccaccgccatcgtcgaccactcactgccgcaccacgtccaagtccccgacatccgtatccgctccggctacacctcctacaagacctacctccagcaccagctcaacaagaccctcaaccctaaactccgcaaagtctggaccacccgcgactgggaccgcaaaatccaggtcttctccgagattttcactcggttgaagcaggaaaagctcctgtcaaataactctcgggcgctgtgtattggcgcccgagtagggcaggaggtccaggctctgaaacgaataggggtgaatgactcgatcgggatggacctcgtgccctaccctccgctggttgtggagggggactttcacagccagccttttcagaacgagacgttcgacttcgagttctcgaacgtgttcgatcatgcgctgtaccctaggaagttcgtggcggagatcgaacggacgttgaggcggcgcggggtgtgtgtgttacacgtggcgatatcgaagcggggggataagtactcggccaacgacctgttcagtgtgcggccattggtggagatgtttcagaggtccgagttggtttatgtcaggaaggttgacgggtttgggttggacaccgaggtcgtctttcggaaacgggaagtcaaactcatccaacaacggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

275

Amino Acids

32.25

Weight (kDa)

10.03

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014962)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24480 AT4G24805
fragaria_vesca FvH4_4g25070
malus_domestica MD13G1106800.v1.1 MD16G1106900.v1.1
prunus_persica Prupe.1G239500_v2.0.a1
pyrus_communis pycom13g09260
rosa_chinensis RchiOBHm_Chr4g0432251
rosa_laevigata RLG00000006859
rosa_multiflora Rmu_co8384597.1_g000001
rosa_roxburghii Rroxscaffold_5G00373700
rosa_rugosa Rorug04G0255600
rosa_samantha Rh4BG320200 Rh4CG335400 Rh4DG315600
rosa_wichuraiana Rw4G027180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 782
AccB1I GGYRCC 1 cut(s) 413
AccBSI CCGCTC 1 cut(s) 231
AccI GTMKAC 1 cut(s) 183
AccII CGCG 2 cut(s) 318, 633
AclI AACGTT 1 cut(s) 101
AcoI YGGCCR 2 cut(s) 684, 707
AcvI CACGTG 1 cut(s) 652
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 3 cut(s) 37, 587, 680
AfiI CCNNNNNNNGG 5 cut(s) 24, 321, 322, 423, 499
AflIII ACRYGT 2 cut(s) 567, 649
AgsI TTSAA 2 cut(s) 91, 367
AjiI CACGTC 2 cut(s) 151, 205
AjnI CCWGG 2 cut(s) 336, 435
AjuI GAANNNNNNNTTGG 2 cut(s) 680, 712
AluBI AGCT 2 cut(s) 271, 379
AluI AGCT 2 cut(s) 271, 379
Alw26I GTCTC 1 cut(s) 536
AlwNI CAGNNNCTG 1 cut(s) 442
Ama87I CYCGRG 2 cut(s) 396, 417
AoxI GGCC 2 cut(s) 684, 707
ArsI GACNNNNNNTTYG 2 cut(s) 324, 356
Asp700I GAANNNNTTC 1 cut(s) 569
AspA2I CCTAGG 1 cut(s) 590
AspLEI GCGC 4 cut(s) 403, 416, 583, 633
AspS9I GGNCC 5 cut(s) 309, 325, 433, 478, 732
AsuHPI GGTGA 1 cut(s) 469
AvaI CYCGRG 2 cut(s) 396, 417
AvaII GGWCC 5 cut(s) 309, 325, 433, 478, 732
AvrII CCTAGG 1 cut(s) 590
BaeGI GKGCMC 1 cut(s) 489
BaeI ACNNNNGTAYC 2 cut(s) 208, 241
BanI GGYRCC 1 cut(s) 413
BauI CACGAG 1 cut(s) 482
BbrPI CACGTG 1 cut(s) 652
BbsI GAAGAC 1 cut(s) 334
BccI CCATC 2 cut(s) 185, 469
BciT130I CCWGG 2 cut(s) 338, 437
BciVI GTATCC 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 1 cut(s) 591
BfoI RGCGCY 2 cut(s) 404, 417
BfuI GTATCC 1 cut(s) 236
BisI GCNGC 3 cut(s) 197, 629, 707
BlnI CCTAGG 1 cut(s) 590
BlsI GCNGC 3 cut(s) 198, 630, 708
BmcAI AGTACT 2 cut(s) 37, 680
Bme1390I CCNGG 2 cut(s) 338, 437
Bme18I GGWCC 5 cut(s) 309, 325, 433, 478, 732
BmeT110I CYCGRG 2 cut(s) 396, 417
BmgBI CACGTC 2 cut(s) 151, 205
BmgT120I GGNCC 5 cut(s) 309, 325, 433, 478, 732
BmiI GGNNCC 2 cut(s) 326, 415
BmrFI CCNGG 2 cut(s) 338, 437
BmrI ACTGGG 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 652
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 2 cut(s) 590, 780
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 5 cut(s) 24, 321, 322, 423, 499
Bse1I ACTGG 2 cut(s) 33, 326
BseBI CCWGG 2 cut(s) 338, 437
BseDI CCNNGG 2 cut(s) 590, 780
BseGI GGATG 4 cut(s) 64, 219, 480, 813
BseLI CCNNNNNNNGG 5 cut(s) 24, 321, 322, 423, 499
BseNI ACTGG 2 cut(s) 33, 326
BseSI GKGCMC 1 cut(s) 489
Bsh1236I CGCG 2 cut(s) 318, 633
Bsh1285I CGRYCG 1 cut(s) 471
BshFI GGCC 2 cut(s) 686, 709
BshNI GGYRCC 1 cut(s) 413
BsiEI CGRYCG 1 cut(s) 471
BsiHKCI CYCGRG 2 cut(s) 396, 417
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 3 cut(s) 197, 338, 527
BslI CCNNNNNNNGG 5 cut(s) 24, 321, 322, 423, 499
BsmAI GTCTC 1 cut(s) 536
BsmBI CGTCTC 1 cut(s) 536
BsmFI GGGAC 3 cut(s) 197, 338, 527
BsnI GGCC 2 cut(s) 686, 709
BsoBI CYCGRG 2 cut(s) 396, 417
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 3 cut(s) 468, 574, 609
BspANI GGCC 2 cut(s) 686, 709
BspFNI CGCG 2 cut(s) 318, 633
BspLI GGNNCC 2 cut(s) 326, 415
BspT107I GGYRCC 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 231
BsrI ACTGG 2 cut(s) 33, 326
BssECI CCNNGG 2 cut(s) 590, 780
BssMI GATC 3 cut(s) 468, 574, 609
BssNI GRCGYC 1 cut(s) 414
BssSI CACGAG 1 cut(s) 482
BssT1I CCWWGG 1 cut(s) 590
Bst2BI CACGAG 1 cut(s) 482
Bst2UI CCWGG 2 cut(s) 338, 437
Bst4CI ACNGT 1 cut(s) 825
Bst6I CTCTTC 2 cut(s) 115, 125
BstACI GRCGYC 1 cut(s) 414
BstBAI YACGTR 1 cut(s) 652
BstC8I GCNNGC 1 cut(s) 527
BstF5I GGATG 4 cut(s) 64, 219, 480, 813
BstFNI CGCG 2 cut(s) 318, 633
BstH2I RGCGCY 2 cut(s) 404, 417
BstHHI GCGC 4 cut(s) 403, 416, 583, 633
BstKTI GATC 3 cut(s) 471, 577, 612
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 3 cut(s) 468, 574, 609
BstMCI CGRYCG 1 cut(s) 471
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNI CCWGG 2 cut(s) 338, 437
BstSCI CCNGG 2 cut(s) 336, 435
BstSLI GKGCMC 1 cut(s) 489
BstUI CGCG 2 cut(s) 318, 633
BstV2I GAAGAC 1 cut(s) 334
BsuI GTATCC 1 cut(s) 236
BsuRI GGCC 2 cut(s) 686, 709
BtrI CACGTC 2 cut(s) 151, 205
BtsCI GGATG 4 cut(s) 64, 219, 480, 813
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 2 cut(s) 191, 706
Cac8I GCNNGC 1 cut(s) 527
CaiI CAGNNNCTG 1 cut(s) 442
CfoI GCGC 4 cut(s) 403, 416, 583, 633
Cfr13I GGNCC 5 cut(s) 309, 325, 433, 478, 732
Csp6I GTAC 3 cut(s) 36, 586, 679
CviAII CATG 2 cut(s) 49, 578
CviJI RGCY 8 cut(s) 237, 271, 379, 440, 525, 529, 686, 709
CviKI_1 RGCY 8 cut(s) 237, 271, 379, 440, 525, 529, 686, 709
CviQI GTAC 3 cut(s) 36, 586, 679
DinI GGCGCC 1 cut(s) 415
DpnI GATC 3 cut(s) 470, 576, 611
DpnII GATC 3 cut(s) 468, 574, 609
DrdI GACNNNNNNGTC 1 cut(s) 782
DseDI GACNNNNNNGTC 1 cut(s) 782
EaeI YGGCCR 2 cut(s) 684, 707
Eam1104I CTCTTC 2 cut(s) 115, 125
EarI CTCTTC 2 cut(s) 115, 125
EciI GGCGGA 1 cut(s) 620
Eco130I CCWWGG 1 cut(s) 590
Eco32I GATATC 1 cut(s) 660
Eco47I GGWCC 5 cut(s) 309, 325, 433, 478, 732
Eco72I CACGTG 1 cut(s) 652
Eco88I CYCGRG 2 cut(s) 396, 417
EcoRII CCWGG 2 cut(s) 336, 435
EcoRV GATATC 1 cut(s) 660
EcoT14I CCWWGG 1 cut(s) 590
EgeI GGCGCC 1 cut(s) 415
EheI GGCGCC 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 590
Esp3I CGTCTC 1 cut(s) 536
FaeI CATG 2 cut(s) 52, 581
FaiI YATR 6 cut(s) 11, 46, 50, 98, 579, 747
FaqI GGGAC 3 cut(s) 197, 338, 527
FatI CATG 2 cut(s) 48, 577
FauI CCCGC 3 cut(s) 323, 626, 660
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 3 cut(s) 197, 629, 707
FokI GGATG 4 cut(s) 51, 206, 487, 800
Fsp4HI GCNGC 3 cut(s) 197, 629, 707
FspBI CTAG 1 cut(s) 591
GlaI GCGC 4 cut(s) 402, 415, 582, 632
GluI GCNGC 3 cut(s) 197, 629, 707
GsuI CTGGAG 1 cut(s) 245
HaeII RGCGCY 2 cut(s) 404, 417
HaeIII GGCC 2 cut(s) 686, 709
HapII CCGG 1 cut(s) 234
HhaI GCGC 4 cut(s) 403, 416, 583, 633
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 2 cut(s) 52, 581
Hin6I GCGC 4 cut(s) 401, 414, 581, 631
HinP1I GCGC 4 cut(s) 401, 414, 581, 631
HincII GTYRAC 2 cut(s) 184, 760
HindII GTYRAC 2 cut(s) 184, 760
HinfI GANTC 3 cut(s) 4, 81, 464
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 2 cut(s) 184, 760
Hpy188I TCNGA 6 cut(s) 349, 444, 537, 729, 736, 795
Hpy188III TCNNGA 4 cut(s) 307, 472, 562, 751
Hpy8I GTNNAC 2 cut(s) 184, 760
Hpy99I CGWCG 2 cut(s) 81, 185
HpyAV CCTTC 3 cut(s) 124, 155, 748
HpyCH4III ACNGT 1 cut(s) 825
HpyCH4IV ACGT 7 cut(s) 101, 150, 204, 545, 567, 620, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpySE526I ACGT 7 cut(s) 101, 150, 204, 545, 567, 620, 651
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 2 cut(s) 52, 581
HspAI GCGC 4 cut(s) 401, 414, 581, 631
KasI GGCGCC 1 cut(s) 413
Kzo9I GATC 3 cut(s) 468, 574, 609
LmnI GCTCC 2 cut(s) 236, 384
MaeI CTAG 1 cut(s) 591
MaeII ACGT 7 cut(s) 101, 150, 204, 545, 567, 620, 651
MaeIII GTNAC 2 cut(s) 82, 645
MalI GATC 3 cut(s) 470, 576, 611
MbiI CCGCTC 1 cut(s) 231
MboI GATC 3 cut(s) 468, 574, 609
MboII GAAGA 4 cut(s) 102, 112, 133, 334
MhlI GDGCHC 1 cut(s) 489
Mly113I GGCGCC 1 cut(s) 414
MlyI GAGTC 2 cut(s) 90, 458
MmeI TCCRAC 1 cut(s) 753
MroXI GAANNNNTTC 1 cut(s) 569
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 338, 437
MvaI CCWGG 2 cut(s) 338, 437
MvnI CGCG 2 cut(s) 318, 633
MwoI GCNNNNNNNGC 1 cut(s) 376
NarI GGCGCC 1 cut(s) 414
NdeII GATC 3 cut(s) 468, 574, 609
NlaIII CATG 2 cut(s) 52, 581
NlaIV GGNNCC 2 cut(s) 326, 415
NmeAIII GCCGAG 1 cut(s) 662
NmuCI GTSAC 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 546
PdmI GAANNNNTTC 1 cut(s) 569
PkrI GCNGC 3 cut(s) 198, 630, 708
Ple19I CGATCG 1 cut(s) 471
PleI GAGTC 2 cut(s) 89, 458
PluTI GGCGCC 1 cut(s) 417
PmaCI CACGTG 1 cut(s) 652
PmlI CACGTG 1 cut(s) 652
PpsI GAGTC 2 cut(s) 89, 458
Ppu21I YACGTR 1 cut(s) 652
Psp1406I AACGTT 1 cut(s) 101
Psp6I CCWGG 2 cut(s) 336, 435
PspCI CACGTG 1 cut(s) 652
PspGI CCWGG 2 cut(s) 336, 435
PspN4I GGNNCC 2 cut(s) 326, 415
PspPI GGNCC 5 cut(s) 309, 325, 433, 478, 732
PstNI CAGNNNCTG 1 cut(s) 442
PvuI CGATCG 1 cut(s) 471
RsaI GTAC 3 cut(s) 37, 587, 680
RsaNI GTAC 3 cut(s) 36, 586, 679
RseI CAYNNNNRTG 1 cut(s) 47
SalI GTCGAC 1 cut(s) 182
SatI GCNGC 3 cut(s) 197, 629, 707
Sau3AI GATC 3 cut(s) 468, 574, 609
Sau96I GGNCC 5 cut(s) 309, 325, 433, 478, 732
ScaI AGTACT 2 cut(s) 37, 680
SchI GAGTC 2 cut(s) 90, 458
ScrFI CCNGG 2 cut(s) 338, 437
SduI GDGCHC 1 cut(s) 489
SfoI GGCGCC 1 cut(s) 415
SinI GGWCC 5 cut(s) 309, 325, 433, 478, 732
SmiMI CAYNNNNRTG 1 cut(s) 47
SspDI GGCGCC 1 cut(s) 413
SspMI CTAG 1 cut(s) 591
StyD4I CCNGG 2 cut(s) 336, 435
StyI CCWWGG 1 cut(s) 590
TaaI ACNGT 1 cut(s) 825
TaiI ACGT 7 cut(s) 104, 153, 207, 548, 570, 623, 654
TaqI TCGA 8 cut(s) 183, 467, 549, 555, 563, 573, 612, 662
TatI WGTACW 2 cut(s) 35, 678
TauI GCSGC 3 cut(s) 199, 631, 709
TscAI CASTG 2 cut(s) 198, 706
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 65
TspGWI ACGGA 2 cut(s) 212, 631
TspRI CASTG 2 cut(s) 198, 706
VpaK11BI GGWCC 5 cut(s) 309, 325, 433, 478, 732
XmaJI CCTAGG 1 cut(s) 590
XmiI GTMKAC 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 569
XspI CTAG 1 cut(s) 591
ZrmI AGTACT 2 cut(s) 37, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.