Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006002

Physical Location & Seq

Genomic Coordinates Forward (+)

8849034 .. 8851790

Gene Structure 2757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G25250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAGCTGACGCAACCCATAAGAGAAAACGGAGACCCGCAGGGACACCAGCTAACAGATCCAGATGCAGAGGTGGTATCTTTGTCACCAAGAACGTTACTAGAATCAGATCGGTACGTGTGTGAGATCTGCAACCAAGGGTTTCAGAGAGATCAGAATCTACAGATGCATAGAAGACGACATAAAGTGCCATGGAAGCTTCTGAAGAGAGACAAGAAGGATGAGGAAGTGAGGAAGAGAGTCTACGTGTGTCCTGAGCCAACATGTCTCCACCATGACCCGTGCCACGCTCTTGGAGATCTGGTCGGAATCAAAAAGCACTTCCGCCGTAAACACAGTGTCCACAAGCAATGGGTTTGCGAGAGATGCTCCAAAGGCTATGCAGTTCAATCTGACTACAAAGCCCATCTCAAGACCTGCGGTTCACGCGGTCACTCCTGCGACTGTGGCCGCGTTTTCTCCAGGGTTGAGAGTTTCATAGAGCATCAAGATACTTGCACCATCCGGCAACCTCAACCCACCAACCACCGTCATCTACAGCAGCACACGATGGGCCTTGACGCTCCATCAAGAACCACTTCGACAGCAAGCTTCGGCCCTTTATTGCATGGACTTCCTTTGTTAAGACCTCCACGACCGTCCAATCAACATTCACCAGCTTTTGCTTACCCTTTCAATGCTTCATCAGCTCCTTTCGAAAGCCTCGAACTTCAACTATCCATAGGAATGGCAAGAACATCAGCACAAGCGAGGCACAACGAAAAGAGAGAGACGAGTTTAACAAAGGAGAGAGCGAACGAGGAGGCAAGGAAGGCAGAGGAAACGAGACAAGAAGCGAAAAGGCAGATAGAGATGGCAGAAAAGGATTTTGAGAAAGCTAAGAGAATAAGGGAAGAAGCAAAAACCGAGTTGGAGAAGGCTCACGTTGTTAGAGAAGAAGCAATCAAGAGGATTAATGCAACAATGATGGAGATCACTTGCCACTCTTGCAAGCAACTATTTCAGCTGCCTGTTACGGCTGATGAGAGTACGTCGTCTCTTGTTATGAGTTACGTTTCCTCGGCGACAACTGAAGGAGAATGCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009581 GO:0009582 GO:0009590 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009959 GO:0009965 GO:0010016 GO:0010031 GO:0010468 GO:0010556 GO:0010600 GO:0010601 GO:0010675 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032879 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044212 GO:0044424 GO:0044464 GO:0046885 GO:0046886 GO:0046982 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050879 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051606 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0090354 GO:0090355 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000112 GO:2000904 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

362

Amino Acids

41.48

Weight (kDa)

8.59

Isoelectric Point (pI)

63.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-2nd_BIRD-IDD	PF22996	101 - 135	3e-19	BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD	PF22995	140 - 164	1.3e-14	BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD	PF22992	168 - 189	1e-05	BIRD-IDD transcription factor, fourth C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25250 AT1G25250 AT1G25250 AT1G68130 AT1G68130
fragaria_vesca	FvH4_5g17840
malus_domestica	MD06G1234600.v1.1 MD13G1015000.v1.1 MD14G1241600.v1.1 MD16G1012300.v1.1
prunus_persica	Prupe.1G338700_v2.0.a1 Prupe.5G239100_v2.0.a1
pyrus_communis	pycom06g20930 pycom13g01270 pycom14g20290 pycom16g01170
rosa_chinensis	RchiOBHm_Chr7g0177741
rosa_laevigata	RLG00000005509
rosa_multiflora	Rmu_sc0004786.1_g000006
rosa_roxburghii	Rroxscaffold_3G00275600
rosa_rugosa	Rorug06G0409000 Rorug06G0409100
rosa_samantha	Rh7AG008500 Rh7BG008500 Rh7CG008900 Rh7DG008600
rosa_wichuraiana	Rw7G000710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	425
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	2 cut(s)	429, 453
AciI	CCGC	5 cut(s)	38, 325, 420, 429, 451
AclI	AACGTT	1 cut(s)	95
AclWI	GGATC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	2 cut(s)	116, 1030
AflIII	ACRYGT	3 cut(s)	117, 246, 263
AgsI	TTSAA	3 cut(s)	389, 676, 713
AjnI	CCWGG	1 cut(s)	461
AluBI	AGCT	8 cut(s)	7, 52, 199, 591, 659, 689, 878, 1006
AluI	AGCT	8 cut(s)	7, 52, 199, 591, 659, 689, 878, 1006
Alw26I	GTCTC	6 cut(s)	27, 204, 272, 764, 820, 1041
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	3 cut(s)	448, 553, 595
ApeKI	GCWGC	2 cut(s)	541, 1006
AseI	ATTAAT	1 cut(s)	954
Asp700I	GAANNNNTTC	1 cut(s)	577
AspS9I	GGNCC	2 cut(s)	553, 596
AsuHPI	GGTGA	2 cut(s)	78, 645
AsuII	TTCGAA	1 cut(s)	696
BaeI	ACNNNNGTAYC	2 cut(s)	106, 139
BarI	GAAGNNNNNNTAC	2 cut(s)	227, 259
BbsI	GAAGAC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	553, 993
BccI	CCATC	6 cut(s)	414, 509, 544, 574, 847, 961
BceAI	ACGGC	2 cut(s)	312, 1032
BciT130I	CCWGG	1 cut(s)	463
BcoDI	GTCTC	6 cut(s)	27, 204, 272, 764, 820, 1041
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	2 cut(s)	161, 536
BfuAI	ACCTGC	1 cut(s)	425
BglII	AGATCT	2 cut(s)	126, 298
BisI	GCNGC	3 cut(s)	451, 542, 1007
BlsI	GCNGC	3 cut(s)	452, 543, 1008
Bme1390I	CCNGG	1 cut(s)	463
BmgT120I	GGNCC	2 cut(s)	553, 596
BmrFI	CCNGG	1 cut(s)	463
BmsI	GCATC	4 cut(s)	55, 156, 356, 493
BpiI	GAAGAC	1 cut(s)	181
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
BpmI	CTGGAG	1 cut(s)	445
Bpu10I	CCTNAGC	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	395
BsaAI	YACGTR	2 cut(s)	118, 247
BsaBI	GATNNNNATC	2 cut(s)	156, 971
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	4 cut(s)	136, 191, 462, 1059
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bse3DI	GCAATG	1 cut(s)	356
Bse8I	GATNNNNATC	2 cut(s)	156, 971
BseBI	CCWGG	1 cut(s)	463
BseDI	CCNNGG	4 cut(s)	136, 191, 462, 1059
BseGI	GGATG	2 cut(s)	226, 501
BseJI	GATNNNNATC	2 cut(s)	156, 971
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	815
BseXI	GCAGC	2 cut(s)	553, 993
Bsh1236I	CGCG	2 cut(s)	429, 453
Bsh1285I	CGRYCG	1 cut(s)	638
BshFI	GGCC	3 cut(s)	450, 555, 597
BsiEI	CGRYCG	1 cut(s)	638
BsiSI	CCGG	1 cut(s)	505
BslFI	GGGAC	1 cut(s)	57
BsmAI	GTCTC	6 cut(s)	27, 204, 272, 764, 820, 1041
BsmBI	CGTCTC	2 cut(s)	764, 1041
BsmFI	GGGAC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	1085
BsnI	GGCC	3 cut(s)	450, 555, 597
Bso31I	GGTCTC	1 cut(s)	27
Bsp119I	TTCGAA	1 cut(s)	696
Bsp143I	GATC	6 cut(s)	58, 109, 126, 151, 298, 972
Bsp19I	CCATGG	1 cut(s)	191
BspACI	CCGC	5 cut(s)	38, 325, 420, 429, 451
BspANI	GGCC	3 cut(s)	450, 555, 597
BspCNI	CTCAG	1 cut(s)	247
BspFNI	CGCG	2 cut(s)	429, 453
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	696
BspTNI	GGTCTC	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	356
BssECI	CCNNGG	4 cut(s)	136, 191, 462, 1059
BssMI	GATC	6 cut(s)	58, 109, 126, 151, 298, 972
BssT1I	CCWWGG	2 cut(s)	136, 191
Bst2UI	CCWGG	1 cut(s)	463
Bst4CI	ACNGT	4 cut(s)	338, 446, 530, 639
Bst6I	CTCTTC	2 cut(s)	200, 230
BstBAI	YACGTR	2 cut(s)	118, 247
BstBI	TTCGAA	1 cut(s)	696
BstC8I	GCNNGC	2 cut(s)	589, 992
BstDEI	CTNAG	2 cut(s)	255, 879
BstDSI	CCRYGG	1 cut(s)	191
BstF5I	GGATG	2 cut(s)	226, 501
BstFNI	CGCG	2 cut(s)	429, 453
BstKTI	GATC	6 cut(s)	61, 112, 129, 154, 301, 975
BstMAI	GTCTC	6 cut(s)	27, 204, 272, 764, 820, 1041
BstMBI	GATC	6 cut(s)	58, 109, 126, 151, 298, 972
BstMCI	CGRYCG	1 cut(s)	638
BstMWI	GCNNNNNNNGC	8 cut(s)	196, 366, 375, 426, 447, 686, 812, 987
BstNI	CCWGG	1 cut(s)	463
BstNSI	RCATGY	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	461
BstSFI	CTRYAG	2 cut(s)	161, 536
BstUI	CGCG	2 cut(s)	429, 453
BstV1I	GCAGC	2 cut(s)	553, 993
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	3 cut(s)	58, 126, 298
BstXI	CCANNNNNNTGG	2 cut(s)	293, 727
BstYI	RGATCY	3 cut(s)	58, 126, 298
BsuRI	GGCC	3 cut(s)	450, 555, 597
BtgI	CCRYGG	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	226, 501
BtsIMutI	CAGTG	1 cut(s)	343
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	2 cut(s)	589, 992
Cfr13I	GGNCC	2 cut(s)	553, 596
CseI	GACGC	2 cut(s)	19, 569
Csp6I	GTAC	2 cut(s)	115, 1029
CviAII	CATG	4 cut(s)	192, 264, 275, 608
CviQI	GTAC	2 cut(s)	115, 1029
DdeI	CTNAG	2 cut(s)	255, 879
DpnI	GATC	6 cut(s)	60, 111, 128, 153, 300, 974
DpnII	GATC	6 cut(s)	58, 109, 126, 151, 298, 972
EaeI	YGGCCR	1 cut(s)	448
Eam1104I	CTCTTC	2 cut(s)	200, 230
EarI	CTCTTC	2 cut(s)	200, 230
EciI	GGCGGA	1 cut(s)	314
Eco130I	CCWWGG	2 cut(s)	136, 191
Eco31I	GGTCTC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	461
EcoT14I	CCWWGG	2 cut(s)	136, 191
EcoT22I	ATGCAT	1 cut(s)	171
ErhI	CCWWGG	2 cut(s)	136, 191
Esp3I	CGTCTC	2 cut(s)	764, 1041
FaeI	CATG	4 cut(s)	195, 267, 278, 611
FalI	AAGNNNNNCTT	2 cut(s)	562, 594
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	4 cut(s)	191, 263, 274, 607
FauI	CCCGC	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	3 cut(s)	451, 542, 1007
FokI	GGATG	2 cut(s)	233, 488
Fsp4HI	GCNGC	3 cut(s)	451, 542, 1007
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	3 cut(s)	451, 542, 1007
GsuI	CTGGAG	1 cut(s)	445
HaeIII	GGCC	3 cut(s)	450, 555, 597
HapII	CCGG	1 cut(s)	505
HgaI	GACGC	2 cut(s)	19, 569
Hin1II	CATG	4 cut(s)	195, 267, 278, 611
HindIII	AAGCTT	2 cut(s)	197, 589
HinfI	GANTC	4 cut(s)	104, 157, 240, 309
HpaII	CCGG	1 cut(s)	505
HphI	GGTGA	2 cut(s)	78, 645
Hpy166II	GTNNAC	4 cut(s)	244, 332, 343, 425
Hpy188I	TCNGA	6 cut(s)	109, 147, 156, 204, 308, 394
Hpy188III	TCNNGA	6 cut(s)	62, 254, 412, 488, 570, 946
Hpy8I	GTNNAC	4 cut(s)	244, 332, 343, 425
Hpy99I	CGWCG	1 cut(s)	1036
HpyAV	CCTTC	4 cut(s)	211, 805, 910, 1067
HpyCH4III	ACNGT	4 cut(s)	338, 446, 530, 639
HpyCH4IV	ACGT	6 cut(s)	95, 117, 246, 924, 1031, 1053
HpyCH4V	TGCA	8 cut(s)	68, 132, 169, 383, 498, 607, 959, 990
HpyF10VI	GCNNNNNNNGC	8 cut(s)	196, 366, 375, 426, 447, 686, 812, 987
HpyF3I	CTNAG	2 cut(s)	255, 879
HpySE526I	ACGT	6 cut(s)	95, 117, 246, 924, 1031, 1053
Hsp92II	CATG	4 cut(s)	195, 267, 278, 611
Kzo9I	GATC	6 cut(s)	58, 109, 126, 151, 298, 972
LmnI	GCTCC	4 cut(s)	4, 374, 568, 694
Lsp1109I	GCAGC	2 cut(s)	553, 993
LweI	GCATC	4 cut(s)	55, 156, 356, 493
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	6 cut(s)	95, 117, 246, 924, 1031, 1053
MaeIII	GTNAC	5 cut(s)	84, 96, 431, 1012, 1049
MalI	GATC	6 cut(s)	60, 111, 128, 153, 300, 974
MboI	GATC	6 cut(s)	58, 109, 126, 151, 298, 972
MboII	GAAGA	5 cut(s)	186, 217, 247, 905, 947
MflI	RGATCY	3 cut(s)	58, 126, 298
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	2 cut(s)	286, 891
Mph1103I	ATGCAT	1 cut(s)	171
MroXI	GAANNNNTTC	1 cut(s)	577
MseI	TTAA	3 cut(s)	623, 779, 954
MslI	CAYNNNNRTG	1 cut(s)	725
MspA1I	CMGCKG	1 cut(s)	1006
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	1 cut(s)	463
Mva1269I	GAATGC	1 cut(s)	1085
MvaI	CCWGG	1 cut(s)	463
MvnI	CGCG	2 cut(s)	429, 453
MwoI	GCNNNNNNNGC	8 cut(s)	196, 366, 375, 426, 447, 686, 812, 987
NcoI	CCATGG	1 cut(s)	191
NdeII	GATC	6 cut(s)	58, 109, 126, 151, 298, 972
NlaIII	CATG	4 cut(s)	195, 267, 278, 611
NmeAIII	GCCGAG	1 cut(s)	1040
NmuCI	GTSAC	2 cut(s)	84, 431
NsiI	ATGCAT	1 cut(s)	171
NspI	RCATGY	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	696
PciI	ACATGT	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	702
PctI	GAATGC	1 cut(s)	1085
PdmI	GAANNNNTTC	1 cut(s)	577
PfeI	GAWTC	3 cut(s)	104, 157, 309
PkrI	GCNGC	3 cut(s)	452, 543, 1008
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Ppu21I	YACGTR	2 cut(s)	118, 247
PscI	ACATGT	1 cut(s)	263
PshBI	ATTAAT	1 cut(s)	954
Psp1406I	AACGTT	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	461
PspPI	GGNCC	2 cut(s)	553, 596
PsuI	RGATCY	3 cut(s)	58, 126, 298
PvuII	CAGCTG	1 cut(s)	1006
RsaI	GTAC	2 cut(s)	116, 1030
RsaNI	GTAC	2 cut(s)	115, 1029
RseI	CAYNNNNRTG	1 cut(s)	725
SaqAI	TTAA	3 cut(s)	623, 779, 954
SatI	GCNGC	3 cut(s)	451, 542, 1007
Sau3AI	GATC	6 cut(s)	58, 109, 126, 151, 298, 972
Sau96I	GGNCC	2 cut(s)	553, 596
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	463
SfaNI	GCATC	4 cut(s)	55, 156, 356, 493
SfcI	CTRYAG	2 cut(s)	161, 536
SfuI	TTCGAA	1 cut(s)	696
SmiMI	CAYNNNNRTG	1 cut(s)	725
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SsiI	CCGC	5 cut(s)	38, 325, 420, 429, 451
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	461
StyI	CCWWGG	2 cut(s)	136, 191
TaaI	ACNGT	4 cut(s)	338, 446, 530, 639
TaiI	ACGT	6 cut(s)	98, 120, 249, 927, 1034, 1056
TaqI	TCGA	3 cut(s)	581, 696, 705
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	3 cut(s)	104, 157, 309
Tru1I	TTAA	3 cut(s)	623, 779, 954
Tru9I	TTAA	3 cut(s)	623, 779, 954
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	2 cut(s)	84, 431
TseI	GCWGC	2 cut(s)	541, 1006
Tsp45I	GTSAC	2 cut(s)	84, 431
TspDTI	ATGAA	2 cut(s)	466, 672
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	343
VspI	ATTAAT	1 cut(s)	954
XceI	RCATGY	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	577
XspI	CTAG	1 cut(s)	101
Zsp2I	ATGCAT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.