Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006002

Physical Location & Seq

Genomic Coordinates Reverse (-)

23787815 .. 23790011

Gene Structure 2197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTACCCAATAACTCTTCTTCCTCAGTCCCTTCTTCTGATCCATTTTCTTGCTTAGAAAATGGCCACACCAATAAAAGAAAGAGAAGACCTGCAGGCACTCCAGATCCAGATGCGGAGGTGGTGTCACTTTCGCCGAAAACCTTGCTGGAATCGGATCGTTACATTTGCGAGATCTGCAACCAAGGGTTTCAGAGAGACCAGAACCTACAGATGCACCGGCGGCGGCACAAGGTGCCGTGGAAGCTGCTGAAGCGAGAGAGTCCGGTCGTGAAGAAGCGGGTTTTTGTGTGCCCGGAACCAAGCTGCCTGCACCATGATCCCTGCCACGCCCTCGGCGATCTCGTCGGCATAAAAAAGCACTTCAGGAGAAAGCACAGCAACCACAAACAGTGGGTTTGTGATAAGTGCTCAAAAGGGTATGCAGATCAATCAGATTACAAGGCACATCTCAAAACCTGCGGTACCAGAGGACATTCTTGTGACTGCGGCCGTGTTTTCTCTAGGGTTGAGAGTTTCATAGAGCACCAAGATGCTTGCAACATGGATCGTGTGCGGCCGGAATCACAAACGCTTCAACCGGGAGCATGCCTGTCACGAACGGCTTCAAGTCCTAGTCCATCTTGCAGTGACAATAATTTTAGCAGGGCTCCTTCCACTTGGCCTCCATCTAATAATTTGGTACTACCACATCCAAGTCCAACCGAGTACACCAAATTAATCTTAAATAACCCTCCCACTCACGCTGATCGATCATGTACAAGCTACACTGTCCAAGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

262

Amino Acids

29.46

Weight (kDa)

8.96

Isoelectric Point (pI)

82.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-2nd_BIRD-IDD	PF22996	92 - 126	2e-18	BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD	PF22995	131 - 155	5.6e-12	BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD	PF22992	159 - 181	1.1e-06	BIRD-IDD transcription factor, fourth C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25250 AT1G25250 AT1G25250 AT1G68130 AT1G68130
fragaria_vesca	FvH4_5g17840
malus_domestica	MD06G1234600.v1.1 MD13G1015000.v1.1 MD14G1241600.v1.1 MD16G1012300.v1.1
prunus_persica	Prupe.1G338700_v2.0.a1 Prupe.5G239100_v2.0.a1
pyrus_communis	pycom06g20930 pycom13g01270 pycom14g20290 pycom16g01170
rosa_chinensis	RchiOBHm_Chr7g0177741
rosa_laevigata	RLG00000005509
rosa_multiflora	Rmu_sc0004786.1_g000006
rosa_roxburghii	Rroxscaffold_3G00275600
rosa_rugosa	Rorug06G0409000 Rorug06G0409100
rosa_samantha	Rh7AG008500 Rh7BG008500 Rh7CG008900 Rh7DG008600
rosa_wichuraiana	Rw7G000710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	100, 467
Acc65I	GGTACC	1 cut(s)	464
AccB1I	GGYRCC	2 cut(s)	235, 464
AciI	CCGC	7 cut(s)	116, 223, 226, 280, 462, 489, 556
AclWI	GGATC	5 cut(s)	35, 101, 165, 314, 555
AcoI	YGGCCR	3 cut(s)	64, 490, 557
AcuI	CTGAAG	2 cut(s)	272, 349
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	4 cut(s)	466, 684, 710, 760
AgsI	TTSAA	2 cut(s)	578, 609
AluBI	AGCT	3 cut(s)	247, 306, 765
AluI	AGCT	3 cut(s)	247, 306, 765
Alw21I	GWGCWC	2 cut(s)	413, 528
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	5 cut(s)	35, 101, 165, 314, 555
AoxI	GGCC	4 cut(s)	64, 490, 557, 662
ApeKI	GCWGC	2 cut(s)	247, 306
AseI	ATTAAT	1 cut(s)	719
Asp700I	GAANNNNTTC	1 cut(s)	604
Asp718I	GGTACC	1 cut(s)	464
AsuC2I	CCSGG	2 cut(s)	296, 582
BaeGI	GKGCMC	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	66
BanI	GGYRCC	2 cut(s)	235, 464
BanII	GRGCYC	1 cut(s)	652
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	2 cut(s)	413, 528
BbvI	GCAGC	2 cut(s)	234, 293
BccI	CCATC	2 cut(s)	628, 676
BceAI	ACGGC	3 cut(s)	223, 477, 618
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcnI	CCSGG	2 cut(s)	296, 582
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	2 cut(s)	504, 615
BfmI	CTRYAG	2 cut(s)	93, 209
BfuAI	ACCTGC	2 cut(s)	100, 467
BglII	AGATCT	1 cut(s)	174
BisI	GCNGC	6 cut(s)	224, 227, 248, 307, 490, 557
BlsI	GCNGC	6 cut(s)	225, 228, 249, 308, 491, 558
Bme1390I	CCNGG	2 cut(s)	296, 582
BmiI	GGNNCC	4 cut(s)	237, 300, 466, 651
BmrFI	CCNGG	2 cut(s)	296, 582
BmsI	GCATC	3 cut(s)	103, 204, 523
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	87
BpuMI	CCSGG	2 cut(s)	296, 582
Bsa29I	ATCGAT	1 cut(s)	751
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	184, 239, 334
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 649, 679
Bse118I	RCCGGY	1 cut(s)	219
BseCI	ATCGAT	1 cut(s)	751
BseDI	CCNNGG	3 cut(s)	184, 239, 334
BseGI	GGATG	1 cut(s)	691
BseMII	CTCAG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	296
BseX3I	CGGCCG	2 cut(s)	490, 557
BseXI	GCAGC	2 cut(s)	234, 293
BsgI	GTGCAG	1 cut(s)	296
Bsh1285I	CGRYCG	3 cut(s)	270, 493, 560
BshFI	GGCC	4 cut(s)	66, 492, 559, 664
BshNI	GGYRCC	2 cut(s)	235, 464
BshVI	ATCGAT	1 cut(s)	751
BsiEI	CGRYCG	3 cut(s)	270, 493, 560
BsiHKAI	GWGCWC	2 cut(s)	413, 528
BsiSI	CCGG	5 cut(s)	220, 266, 296, 560, 581
BslFI	GGGAC	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	4 cut(s)	66, 492, 559, 664
Bso31I	GGTCTC	1 cut(s)	192
Bsp1286I	GDGCHC	4 cut(s)	296, 413, 528, 652
Bsp1407I	TGTACA	1 cut(s)	758
BspACI	CCGC	7 cut(s)	116, 223, 226, 280, 462, 489, 556
BspANI	GGCC	4 cut(s)	66, 492, 559, 664
BspCNI	CTCAG	1 cut(s)	38
BspDI	ATCGAT	1 cut(s)	751
BspLI	GGNNCC	4 cut(s)	237, 300, 466, 651
BspMAI	CTGCAG	1 cut(s)	97
BspMI	ACCTGC	2 cut(s)	100, 467
BspPI	GGATC	5 cut(s)	35, 101, 165, 314, 555
BspT107I	GGYRCC	2 cut(s)	235, 464
BspTNI	GGTCTC	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	219
BsrGI	TGTACA	1 cut(s)	758
BssAI	RCCGGY	1 cut(s)	219
BssECI	CCNNGG	3 cut(s)	184, 239, 334
BssT1I	CCWWGG	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	393, 772
Bst6I	CTCTTC	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstAUI	TGTACA	1 cut(s)	758
BstC8I	GCNNGC	4 cut(s)	97, 311, 538, 589
BstDEI	CTNAG	2 cut(s)	25, 55
BstDSI	CCRYGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	691
BstMAI	GTCTC	1 cut(s)	192
BstMCI	CGRYCG	3 cut(s)	270, 493, 560
BstMWI	GCNNNNNNNGC	5 cut(s)	177, 223, 235, 244, 253
BstNSI	RCATGY	1 cut(s)	591
BstSCI	CCNGG	2 cut(s)	294, 580
BstSFI	CTRYAG	2 cut(s)	93, 209
BstSLI	GKGCMC	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	234, 293
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	2 cut(s)	106, 174
BstYI	RGATCY	2 cut(s)	106, 174
BstZI	CGGCCG	2 cut(s)	490, 557
Bsu15I	ATCGAT	1 cut(s)	751
BsuRI	GGCC	4 cut(s)	66, 492, 559, 664
BsuTUI	ATCGAT	1 cut(s)	751
BtgI	CCRYGG	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	691
BtsI	GCAGTG	1 cut(s)	634
BtsIMutI	CAGTG	3 cut(s)	398, 634, 768
BveI	ACCTGC	2 cut(s)	100, 467
Cac8I	GCNNGC	4 cut(s)	97, 311, 538, 589
Cfr10I	RCCGGY	1 cut(s)	219
ClaI	ATCGAT	1 cut(s)	751
Csp6I	GTAC	4 cut(s)	465, 683, 709, 759
CviAII	CATG	4 cut(s)	317, 544, 588, 756
CviJI	RGCY	9 cut(s)	66, 247, 306, 492, 559, 605, 650, 664, 765
CviKI_1	RGCY	9 cut(s)	66, 247, 306, 492, 559, 605, 650, 664, 765
CviQI	GTAC	4 cut(s)	465, 683, 709, 759
DdeI	CTNAG	2 cut(s)	25, 55
DraIII	CACNNNGTG	1 cut(s)	235
EaeI	YGGCCR	3 cut(s)	64, 490, 557
EagI	CGGCCG	2 cut(s)	490, 557
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
EclXI	CGGCCG	2 cut(s)	490, 557
Eco130I	CCWWGG	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	652
Eco31I	GGTCTC	1 cut(s)	192
Eco52I	CGGCCG	2 cut(s)	490, 557
Eco57I	CTGAAG	2 cut(s)	272, 349
EcoT14I	CCWWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	652
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	4 cut(s)	320, 547, 591, 759
FaiI	YATR	7 cut(s)	318, 353, 423, 521, 545, 589, 757
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	4 cut(s)	316, 543, 587, 755
FauI	CCCGC	1 cut(s)	273
Fnu4HI	GCNGC	6 cut(s)	224, 227, 248, 307, 490, 557
FokI	GGATG	1 cut(s)	678
FriOI	GRGCYC	1 cut(s)	652
Fsp4HI	GCNGC	6 cut(s)	224, 227, 248, 307, 490, 557
FspBI	CTAG	2 cut(s)	504, 615
GluI	GCNGC	6 cut(s)	224, 227, 248, 307, 490, 557
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	4 cut(s)	66, 492, 559, 664
HapII	CCGG	5 cut(s)	220, 266, 296, 560, 581
Hin1II	CATG	4 cut(s)	320, 547, 591, 759
HinfI	GANTC	3 cut(s)	152, 262, 563
HpaII	CCGG	5 cut(s)	220, 266, 296, 560, 581
Hpy166II	GTNNAC	1 cut(s)	711
Hpy188I	TCNGA	4 cut(s)	40, 157, 195, 436
Hpy188III	TCNNGA	5 cut(s)	104, 110, 271, 367, 597
Hpy8I	GTNNAC	1 cut(s)	711
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	2 cut(s)	42, 663
HpyCH4III	ACNGT	2 cut(s)	393, 772
HpyCH4V	TGCA	7 cut(s)	95, 180, 217, 313, 425, 540, 627
HpyF10VI	GCNNNNNNNGC	5 cut(s)	177, 223, 235, 244, 253
HpyF3I	CTNAG	2 cut(s)	25, 55
Hsp92II	CATG	4 cut(s)	320, 547, 591, 759
KpnI	GGTACC	1 cut(s)	468
LmnI	GCTCC	2 cut(s)	584, 655
Lsp1109I	GCAGC	2 cut(s)	234, 293
LweI	GCATC	3 cut(s)	103, 204, 523
MaeI	CTAG	2 cut(s)	504, 615
MaeIII	GTNAC	6 cut(s)	3, 126, 161, 482, 594, 629
MboII	GAAGA	5 cut(s)	9, 12, 27, 99, 286
MflI	RGATCY	2 cut(s)	106, 174
MhlI	GDGCHC	4 cut(s)	296, 413, 528, 652
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	3 cut(s)	637, 676, 716
MluNI	TGGCCA	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	725
MnlI	CCTC	6 cut(s)	34, 112, 344, 464, 675, 744
Mox20I	TGGCCA	1 cut(s)	66
MroXI	GAANNNNTTC	1 cut(s)	604
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	2 cut(s)	719, 725
MslI	CAYNNNNRTG	2 cut(s)	480, 531
Msp20I	TGGCCA	1 cut(s)	66
MspI	CCGG	5 cut(s)	220, 266, 296, 560, 581
MspR9I	CCNGG	2 cut(s)	296, 582
MwoI	GCNNNNNNNGC	5 cut(s)	177, 223, 235, 244, 253
NciI	CCSGG	2 cut(s)	296, 582
NlaIII	CATG	4 cut(s)	320, 547, 591, 759
NlaIV	GGNNCC	4 cut(s)	237, 300, 466, 651
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	4 cut(s)	126, 482, 594, 629
NspI	RCATGY	1 cut(s)	591
PaeI	GCATGC	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	2 cut(s)	336, 342
PdmI	GAANNNNTTC	1 cut(s)	604
PfeI	GAWTC	2 cut(s)	152, 563
PkrI	GCNGC	6 cut(s)	225, 228, 249, 308, 491, 558
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PshBI	ATTAAT	1 cut(s)	719
PspN4I	GGNNCC	4 cut(s)	237, 300, 466, 651
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	2 cut(s)	106, 174
RsaI	GTAC	4 cut(s)	466, 684, 710, 760
RsaNI	GTAC	4 cut(s)	465, 683, 709, 759
RseI	CAYNNNNRTG	2 cut(s)	480, 531
SaqAI	TTAA	2 cut(s)	719, 725
SatI	GCNGC	6 cut(s)	224, 227, 248, 307, 490, 557
SbfI	CCTGCAGG	1 cut(s)	97
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	296, 582
SdaI	CCTGCAGG	1 cut(s)	97
SduI	GDGCHC	4 cut(s)	296, 413, 528, 652
SetI	ASST	9 cut(s)	94, 123, 146, 210, 237, 249, 308, 461, 767
SfaNI	GCATC	3 cut(s)	103, 204, 523
SfcI	CTRYAG	2 cut(s)	93, 209
SgrAI	CRCCGGYG	1 cut(s)	219
SmiMI	CAYNNNNRTG	2 cut(s)	480, 531
SphI	GCATGC	1 cut(s)	591
Sse8387I	CCTGCAGG	1 cut(s)	97
Sse9I	AATT	3 cut(s)	637, 676, 716
SsiI	CCGC	7 cut(s)	116, 223, 226, 280, 462, 489, 556
SspMI	CTAG	2 cut(s)	504, 615
StyD4I	CCNGG	2 cut(s)	294, 580
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	393, 772
TaqI	TCGA	1 cut(s)	751
TasI	AATT	3 cut(s)	637, 676, 716
TatI	WGTACW	2 cut(s)	708, 758
TauI	GCSGC	4 cut(s)	226, 229, 492, 559
TfiI	GAWTC	2 cut(s)	152, 563
Tru1I	TTAA	2 cut(s)	719, 725
Tru9I	TTAA	2 cut(s)	719, 725
TscAI	CASTG	3 cut(s)	398, 634, 775
TseFI	GTSAC	4 cut(s)	126, 482, 594, 629
TseI	GCWGC	2 cut(s)	247, 306
Tsp45I	GTSAC	4 cut(s)	126, 482, 594, 629
TspDTI	ATGAA	1 cut(s)	508
TspRI	CASTG	3 cut(s)	398, 634, 775
VspI	ATTAAT	1 cut(s)	719
XceI	RCATGY	1 cut(s)	591
XmnI	GAANNNNTTC	1 cut(s)	604
XspI	CTAG	2 cut(s)	504, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.