Rorug06G0409000

Protein SHOOT GRAVITROPISM 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006002
Physical Location & Seq
Reverse (-)
55162683 .. 55167110
4428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0409000.1

Sequence Viewer

Length: 576 bp
ATGGGTCAGCTACTTGCGAAATCAAATCGAGGTGAGCTATTTGCCAAATCAGATTTTCAGTTAGAAGCTTGGATTTGGGCAAATCTGGGAGTCTTAATCAGTTGTTTGCGAATCTTGGAGCAGAACACTGCAGTAGTGTCTACAACATTTGAATGGGCGTGTGGTTCTTCTTCCGGAAACTCCAAGCTACTTCCAAAGAATCAGCTTCTTTTTGAGTTGGAGCTTGAAGGCTGCATATATTCGAGAAGTTGGAATGACGTTCGGAGACTCAAGGATTCTGCTCTGAGACTGAAAAAAAAACCCACTACACAAGCCTTTATGCTTCAGAATAAGTGTTCTGACCATGACACCGTTGTTGTGGCCTTTAAGGGAACCGAATCGCTTGATGCAGATGCTATGCTCCGACTTTGTATCTCTTGTGGAAGCGTCACAAGATTGACGAAGACTGAGGCTTTGCTGCACAAGTTGTTCATTGACACAAGACCAGCAAAACCAACAAAGGAAGAAAAGAATTCAACCTTCAAACTTTCAATCATGTTTCCCTTTTATCTCATGCTTGATCTTAATGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2

Protein Analysis

191

Amino Acids

21.55

Weight (kDa)

8.73

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 140
AccIII TCCGGA 1 cut(s) 173
AcsI RAATTY 1 cut(s) 511
AcuI CTGAAG 1 cut(s) 308
AgsI TTSAA 5 cut(s) 152, 227, 516, 523, 531
AluBI AGCT 7 cut(s) 10, 37, 68, 187, 205, 223, 572
AluI AGCT 7 cut(s) 10, 37, 68, 187, 205, 223, 572
Alw26I GTCTC 2 cut(s) 259, 280
Aor13HI TCCGGA 1 cut(s) 173
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 2 cut(s) 231, 457
ApoI RAATTY 1 cut(s) 511
ArsI GACNNNNNNTTYG 2 cut(s) 436, 468
AsuHPI GGTGA 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 449
BbvI GCAGC 2 cut(s) 218, 444
BcoDI GTCTC 2 cut(s) 259, 280
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 232, 458
BlsI GCNGC 2 cut(s) 233, 459
BmiI GGNNCC 1 cut(s) 373
BmsI GCATC 2 cut(s) 376, 382
BpiI GAAGAC 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 254
BsaWI WCCGGW 1 cut(s) 173
BseAI TCCGGA 1 cut(s) 173
BseMII CTCAG 2 cut(s) 275, 438
BseXI GCAGC 2 cut(s) 218, 444
BsgI GTGCAG 1 cut(s) 443
BshFI GGCC 1 cut(s) 362
BsiSI CCGG 1 cut(s) 174
BsmAI GTCTC 2 cut(s) 259, 280
BsnI GGCC 1 cut(s) 362
Bsp13I TCCGGA 1 cut(s) 173
Bsp143I GATC 1 cut(s) 559
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 2 cut(s) 276, 439
BspEI TCCGGA 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 373
BspMAI CTGCAG 1 cut(s) 133
BssMI GATC 1 cut(s) 559
Bst4CI ACNGT 1 cut(s) 352
BstDEI CTNAG 3 cut(s) 284, 447, 573
BstKTI GATC 1 cut(s) 562
BstMAI GTCTC 2 cut(s) 259, 280
BstMBI GATC 1 cut(s) 559
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 218, 444
BstV2I GAAGAC 1 cut(s) 449
BsuRI GGCC 1 cut(s) 362
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
CseI GACGC 1 cut(s) 415
CviAII CATG 3 cut(s) 344, 535, 553
DdeI CTNAG 3 cut(s) 284, 447, 573
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
Eco57I CTGAAG 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 511
FaeI CATG 3 cut(s) 347, 538, 556
FaiI YATR 7 cut(s) 236, 238, 320, 345, 398, 536, 554
FatI CATG 3 cut(s) 343, 534, 552
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 2 cut(s) 232, 458
Fsp4HI GCNGC 2 cut(s) 232, 458
GluI GCNGC 2 cut(s) 232, 458
HaeIII GGCC 1 cut(s) 362
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 415
Hin1II CATG 3 cut(s) 347, 538, 556
HindIII AAGCTT 2 cut(s) 66, 570
HinfI GANTC 6 cut(s) 90, 111, 199, 267, 275, 377
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 6 cut(s) 52, 264, 285, 327, 340, 404
Hpy188III TCNNGA 2 cut(s) 174, 243
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 2 cut(s) 221, 529
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 4 cut(s) 131, 234, 389, 460
HpyF3I CTNAG 3 cut(s) 284, 447, 573
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 3 cut(s) 347, 538, 556
Kpn2I TCCGGA 1 cut(s) 173
Kzo9I GATC 1 cut(s) 559
LmnI GCTCC 3 cut(s) 118, 220, 405
LpnPI CCDG 3 cut(s) 71, 187, 498
Lsp1109I GCAGC 2 cut(s) 218, 444
LweI GCATC 2 cut(s) 376, 382
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 427
MalI GATC 1 cut(s) 561
MboI GATC 1 cut(s) 559
MboII GAAGA 4 cut(s) 159, 162, 454, 515
MluCI AATT 1 cut(s) 511
MlyI GAGTC 2 cut(s) 99, 261
MmeI TCCRAC 3 cut(s) 198, 230, 427
MnlI CCTC 2 cut(s) 23, 442
MroI TCCGGA 1 cut(s) 173
MseI TTAA 3 cut(s) 95, 366, 564
MslI CAYNNNNRTG 1 cut(s) 151
MspI CCGG 1 cut(s) 174
NdeII GATC 1 cut(s) 559
NlaIII CATG 3 cut(s) 347, 538, 556
NlaIV GGNNCC 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 427
PfeI GAWTC 4 cut(s) 111, 199, 275, 377
PkrI GCNGC 2 cut(s) 233, 459
PleI GAGTC 2 cut(s) 98, 261
PpsI GAGTC 2 cut(s) 98, 261
PspN4I GGNNCC 1 cut(s) 373
PstI CTGCAG 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 3 cut(s) 95, 366, 564
SatI GCNGC 2 cut(s) 232, 458
Sau3AI GATC 1 cut(s) 559
SchI GAGTC 2 cut(s) 99, 261
SfaNI GCATC 2 cut(s) 376, 382
SfcI CTRYAG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 1 cut(s) 511
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 261
TaqI TCGA 2 cut(s) 28, 242
TasI AATT 1 cut(s) 511
TfiI GAWTC 4 cut(s) 111, 199, 275, 377
Tru1I TTAA 3 cut(s) 95, 366, 564
Tru9I TTAA 3 cut(s) 95, 366, 564
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 2 cut(s) 231, 457
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 1 cut(s) 460
TspRI CASTG 1 cut(s) 133
XapI RAATTY 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.