AT1G68130

nucleic acid binding transcription factor zinc ion binding

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
25532008 .. 25534698
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68130.1

Sequence Viewer

Length: 1260 bp
ATGATAGACTACGAGAGAAGCAATACCACCAAGAACATCAACACCCATCATCACAACCCTCCTCCATCTTCATCTTCCTCTGATCTTCTTCCCGACGGTAATGGAACCGCCGTGACTCAGAAGCGGAAACGGAGACCCGCCGGGACACCGGATCCGGAGGCGGAGGTGGTATCTTTATCACCAAGAACGTTACTAGAATCGGATCGGTACGTATGTGAGATCTGTAACCAAGGGTTTCAAAGGGACCAGAATCTACAGATGCATAGAAGACGACATAAAGTTCCATGGAAGCTTCTTAAAAGAGAGACCAACGAGGAAGTGAGGAAAAGAGTCTACGTCTGTCCGGAGCCGACATGTCTCCACCACAACCCTTGCCACGCGCTCGGAGATCTCGTGGGAATCAAGAAACACTTCCGACGGAAACATAGTAACCACAAGCAATGGATCTGCGAGCGATGCTCAAAAGGCTACGCAGTTCAATCTGATTACAAAGCTCATCTCAAAACCTGTGGCACTCGCGGCCACTCCTGTGACTGCGGCCGAGTTTTTTCCAGAGTGGAAAGTTTCATAGAGCACCAAGACACTTGCACCGTACGCCGATCCCAACCCTCCAACCACCGTTTACATGAGCAGCAACAACATACCACAAACGCTACACAAACCGCTTCAACCGCGGAAAACAACGAGAACGGGGACCTCTCCATTGGTCCTATATTGCCTGGACATCCTTTACAAAGAAGACAATCCCCACCGTCGGAACAACAACCATCCACTTTGCTCTATCCCTTCGTTACTAATGGTAGTATCGAGCTTCAGCTACTTCCATCGAGGAATTGTGCTGATGAGACCAGCCTTAGTCTGTCTATAGGGACAATGGATCAAAAGACAATGTCGGAAGTTGAGAAGAAGAGCTACGAGAAGGGAGAAACGAGCCTAGAAAGAGAGGAGGCGAGAAGAGAAACAAAGAGGCAGATCGAAATCGCGGAATTGGAGTTTGCTGAAGCCAAGAGAATAAGGCAACATGCGAGAGCTGAGCTTCACAAAGCTCATCTTTTTAGAGAAGAAGCAAGTAGGAGGATTAGTGCAACGATGATGCAAATAACTTGCCACAATTGCAAGCAACATTTTCAAGCTCCGGCTGCTTTGGTTCCTCCTCCTCCTCAGACGCATTGTACCGATGAGAGCACGTCTCTGGCCGTGAGCTACATGTCTTCGGCGACTACCGAAGGAGAAAAGGCGAGTGATAGAGCATCTTCATAG

Protein Analysis

419

Amino Acids

47.56

Weight (kDa)

8.75

Isoelectric Point (pI)

70.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 108 - 142 3.2e-19 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 147 - 171 1.6e-14 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 175 - 198 4.9e-06 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 333
AccII CGCG 4 cut(s) 380, 519, 674, 983
AccIII TCCGGA 2 cut(s) 154, 343
AclI AACGTT 1 cut(s) 188
AclWI GGATC 6 cut(s) 146, 159, 210, 452, 594, 885
AcoI YGGCCR 3 cut(s) 520, 538, 1194
AcuI CTGAAG 2 cut(s) 797, 1020
AfaI GTAC 3 cut(s) 209, 594, 1174
AfiI CCNNNNNNNGG 1 cut(s) 754
AflIII ACRYGT 2 cut(s) 353, 1206
AgsI TTSAA 4 cut(s) 239, 479, 669, 1130
AjiI CACGTC 1 cut(s) 1188
AjnI CCWGG 1 cut(s) 718
AleI CACNNNNGTG 1 cut(s) 528
Alw21I GWGCWC 2 cut(s) 576, 1187
Alw26I GTCTC 5 cut(s) 127, 299, 362, 839, 1194
AlwI GGATC 6 cut(s) 146, 159, 210, 452, 594, 885
Aor13HI TCCGGA 2 cut(s) 154, 343
AoxI GGCC 3 cut(s) 520, 538, 1194
ApeKI GCWGC 2 cut(s) 631, 1139
Asp700I GAANNNNTTC 1 cut(s) 410
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 3 cut(s) 244, 694, 707
AsuC2I CCSGG 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 171
AvaII GGWCC 3 cut(s) 244, 694, 707
BaeI ACNNNNGTAYC 2 cut(s) 199, 232
BamHI GGATCC 1 cut(s) 151
BarI GAAGNNNNNNTAC 2 cut(s) 896, 928
BauI CACGAG 1 cut(s) 392
BbsI GAAGAC 3 cut(s) 274, 745, 1203
Bbv12I GWGCWC 2 cut(s) 576, 1187
BbvI GCAGC 2 cut(s) 643, 1126
BccI CCATC 4 cut(s) 54, 73, 775, 832
BceAI ACGGC 2 cut(s) 95, 1181
BciT130I CCWGG 1 cut(s) 720
BcnI CCSGG 1 cut(s) 142
BcoDI GTCTC 5 cut(s) 127, 299, 362, 839, 1194
BfaI CTAG 2 cut(s) 194, 935
BfmI CTRYAG 2 cut(s) 254, 864
BglII AGATCT 2 cut(s) 219, 388
BisI GCNGC 4 cut(s) 520, 538, 632, 1140
BlpI GCTNAGC 1 cut(s) 1032
BlsI GCNGC 4 cut(s) 521, 539, 633, 1141
Bme1390I CCNGG 2 cut(s) 142, 720
Bme18I GGWCC 3 cut(s) 244, 694, 707
BmgBI CACGTC 1 cut(s) 1188
BmgT120I GGNCC 3 cut(s) 244, 694, 707
BmiI GGNNCC 6 cut(s) 106, 153, 245, 348, 695, 1149
BmrFI CCNGG 2 cut(s) 142, 720
BmsI GCATC 3 cut(s) 249, 446, 1083
BpiI GAAGAC 3 cut(s) 274, 745, 1203
BplI GAGNNNNNCTC 4 cut(s) 443, 475, 1174, 1206
Bpu1102I GCTNAGC 1 cut(s) 1032
BpuMI CCSGG 1 cut(s) 142
BsaAI YACGTR 1 cut(s) 211
BsaBI GATNNNNATC 1 cut(s) 977
BsaI GGTCTC 3 cut(s) 127, 299, 839
BsaJI CCNNGG 3 cut(s) 229, 284, 672
BsaWI WCCGGW 3 cut(s) 148, 154, 343
BsaXI ACNNNNNCTCC 4 cut(s) 378, 408, 1066, 1096
Bsc4I CCNNNNNNNGG 1 cut(s) 754
Bse3DI GCAATG 1 cut(s) 446
Bse8I GATNNNNATC 1 cut(s) 977
BseAI TCCGGA 2 cut(s) 154, 343
BseBI CCWGG 1 cut(s) 720
BseDI CCNNGG 3 cut(s) 229, 284, 672
BseGI GGATG 2 cut(s) 724, 767
BseJI GATNNNNATC 1 cut(s) 977
BseLI CCNNNNNNNGG 1 cut(s) 754
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 3 cut(s) 131, 1023, 1175
BseRI GAGGAG 5 cut(s) 51, 959, 1143, 1146, 1149
BseX3I CGGCCG 1 cut(s) 538
BseXI GCAGC 2 cut(s) 643, 1126
Bsh1236I CGCG 4 cut(s) 380, 519, 674, 983
Bsh1285I CGRYCG 1 cut(s) 541
BshFI GGCC 3 cut(s) 522, 540, 1196
BsiEI CGRYCG 1 cut(s) 541
BsiHKAI GWGCWC 2 cut(s) 576, 1187
BsiSI CCGG 5 cut(s) 141, 149, 155, 344, 1136
BsiWI CGTACG 1 cut(s) 592
BslFI GGGAC 4 cut(s) 157, 257, 707, 883
BslI CCNNNNNNNGG 1 cut(s) 754
BsmAI GTCTC 5 cut(s) 127, 299, 362, 839, 1194
BsmBI CGTCTC 1 cut(s) 1194
BsmFI GGGAC 4 cut(s) 157, 257, 707, 883
BsnI GGCC 3 cut(s) 522, 540, 1196
Bso31I GGTCTC 3 cut(s) 127, 299, 839
Bsp1286I GDGCHC 2 cut(s) 576, 1187
Bsp13I TCCGGA 2 cut(s) 154, 343
Bsp143I GATC 9 cut(s) 82, 151, 202, 219, 388, 444, 599, 877, 972
Bsp1720I GCTNAGC 1 cut(s) 1032
Bsp19I CCATGG 1 cut(s) 284
BspANI GGCC 3 cut(s) 522, 540, 1196
BspCNI CTCAG 3 cut(s) 130, 1024, 1174
BspEI TCCGGA 2 cut(s) 154, 343
BspFNI CGCG 4 cut(s) 380, 519, 674, 983
BspLI GGNNCC 6 cut(s) 106, 153, 245, 348, 695, 1149
BspPI GGATC 6 cut(s) 146, 159, 210, 452, 594, 885
BspQI GCTCTTC 1 cut(s) 902
BspTNI GGTCTC 3 cut(s) 127, 299, 839
BsrDI GCAATG 1 cut(s) 446
BssECI CCNNGG 3 cut(s) 229, 284, 672
BssMI GATC 9 cut(s) 82, 151, 202, 219, 388, 444, 599, 877, 972
BssSI CACGAG 1 cut(s) 392
BssT1I CCWWGG 2 cut(s) 229, 284
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 720
Bst4CI ACNGT 4 cut(s) 98, 592, 620, 753
Bst6I CTCTTC 2 cut(s) 902, 949
BstBAI YACGTR 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 452, 1118
BstDEI CTNAG 4 cut(s) 117, 854, 1032, 1161
BstDSI CCRYGG 2 cut(s) 284, 672
BstF5I GGATG 2 cut(s) 724, 767
BstFNI CGCG 4 cut(s) 380, 519, 674, 983
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 9 cut(s) 85, 154, 205, 222, 391, 447, 602, 880, 975
BstMAI GTCTC 5 cut(s) 127, 299, 362, 839, 1194
BstMBI GATC 9 cut(s) 82, 151, 202, 219, 388, 444, 599, 877, 972
BstMCI CGRYCG 1 cut(s) 541
BstMWI GCNNNNNNNGC 7 cut(s) 456, 465, 519, 594, 671, 1113, 1139
BstNI CCWGG 1 cut(s) 720
BstNSI RCATGY 3 cut(s) 357, 1025, 1210
BstSCI CCNGG 2 cut(s) 140, 718
BstSFI CTRYAG 2 cut(s) 254, 864
BstSNI TACGTA 1 cut(s) 211
BstUI CGCG 4 cut(s) 380, 519, 674, 983
BstV1I GCAGC 2 cut(s) 643, 1126
BstV2I GAAGAC 3 cut(s) 274, 745, 1203
BstX2I RGATCY 4 cut(s) 151, 219, 388, 444
BstYI RGATCY 4 cut(s) 151, 219, 388, 444
BstZI CGGCCG 1 cut(s) 538
BsuRI GGCC 3 cut(s) 522, 540, 1196
BtgI CCRYGG 2 cut(s) 284, 672
BtgZI GCGATG 1 cut(s) 469
BtrI CACGTC 1 cut(s) 1188
BtsCI GGATG 2 cut(s) 724, 767
Cac8I GCNNGC 2 cut(s) 452, 1118
CfoI GCGC 1 cut(s) 382
Cfr13I GGNCC 3 cut(s) 244, 694, 707
Cfr42I CCGCGG 1 cut(s) 675
CseI GACGC 1 cut(s) 1174
Csp6I GTAC 3 cut(s) 208, 593, 1173
CspCI CAANNNNNGTGG 4 cut(s) 353, 388, 490, 525
CviAII CATG 5 cut(s) 285, 354, 626, 1022, 1207
CviQI GTAC 3 cut(s) 208, 593, 1173
DdeI CTNAG 4 cut(s) 117, 854, 1032, 1161
DpnI GATC 9 cut(s) 84, 153, 204, 221, 390, 446, 601, 879, 974
DpnII GATC 9 cut(s) 82, 151, 202, 219, 388, 444, 599, 877, 972
EaeI YGGCCR 3 cut(s) 520, 538, 1194
EagI CGGCCG 1 cut(s) 538
Eam1104I CTCTTC 2 cut(s) 902, 949
EarI CTCTTC 2 cut(s) 902, 949
EciI GGCGGA 1 cut(s) 176
EclXI CGGCCG 1 cut(s) 538
Eco105I TACGTA 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 229, 284
Eco31I GGTCTC 3 cut(s) 127, 299, 839
Eco47I GGWCC 3 cut(s) 244, 694, 707
Eco52I CGGCCG 1 cut(s) 538
Eco57I CTGAAG 2 cut(s) 797, 1020
EcoO109I RGGNCCY 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 718
EcoT14I CCWWGG 2 cut(s) 229, 284
EcoT22I ATGCAT 1 cut(s) 264
ErhI CCWWGG 2 cut(s) 229, 284
Esp3I CGTCTC 1 cut(s) 1194
FaeI CATG 5 cut(s) 288, 357, 629, 1025, 1210
FalI AAGNNNNNCTT 4 cut(s) 395, 427, 1035, 1067
FaqI GGGAC 4 cut(s) 157, 257, 707, 883
FatI CATG 5 cut(s) 284, 353, 625, 1021, 1206
FauI CCCGC 1 cut(s) 145
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 4 cut(s) 520, 538, 632, 1140
FokI GGATG 2 cut(s) 711, 754
Fsp4HI GCNGC 4 cut(s) 520, 538, 632, 1140
FspBI CTAG 2 cut(s) 194, 935
GlaI GCGC 1 cut(s) 381
GluI GCNGC 4 cut(s) 520, 538, 632, 1140
HaeIII GGCC 3 cut(s) 522, 540, 1196
HapII CCGG 5 cut(s) 141, 149, 155, 344, 1136
HgaI GACGC 1 cut(s) 1174
HhaI GCGC 1 cut(s) 382
Hin1II CATG 5 cut(s) 288, 357, 629, 1025, 1210
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 5 cut(s) 115, 197, 250, 330, 399
HpaII CCGG 5 cut(s) 141, 149, 155, 344, 1136
HphI GGTGA 1 cut(s) 171
Hpy166II GTNNAC 2 cut(s) 334, 623
Hpy188I TCNGA 9 cut(s) 82, 120, 202, 386, 416, 484, 757, 895, 1164
Hpy188III TCNNGA 5 cut(s) 92, 155, 344, 403, 552
Hpy8I GTNNAC 2 cut(s) 334, 623
Hpy99I CGWCG 3 cut(s) 98, 420, 757
HpyAV CCTTC 3 cut(s) 796, 913, 1220
HpyCH4III ACNGT 4 cut(s) 98, 592, 620, 753
HpyCH4IV ACGT 4 cut(s) 188, 210, 336, 1187
HpyCH4V TGCA 5 cut(s) 262, 588, 1085, 1096, 1116
HpyF10VI GCNNNNNNNGC 7 cut(s) 456, 465, 519, 594, 671, 1113, 1139
HpyF3I CTNAG 4 cut(s) 117, 854, 1032, 1161
HpySE526I ACGT 4 cut(s) 188, 210, 336, 1187
Hsp92II CATG 5 cut(s) 288, 357, 629, 1025, 1210
HspAI GCGC 1 cut(s) 380
Kpn2I TCCGGA 2 cut(s) 154, 343
KspI CCGCGG 1 cut(s) 675
Kzo9I GATC 9 cut(s) 82, 151, 202, 219, 388, 444, 599, 877, 972
LguI GCTCTTC 1 cut(s) 902
LmnI GCTCC 2 cut(s) 346, 1138
Lsp1109I GCAGC 2 cut(s) 643, 1126
LweI GCATC 3 cut(s) 249, 446, 1083
MaeI CTAG 2 cut(s) 194, 935
MaeII ACGT 4 cut(s) 188, 210, 336, 1187
MaeIII GTNAC 6 cut(s) 112, 189, 224, 428, 530, 790
MalI GATC 9 cut(s) 84, 153, 204, 221, 390, 446, 601, 879, 974
MboI GATC 9 cut(s) 82, 151, 202, 219, 388, 444, 599, 877, 972
MfeI CAATTG 1 cut(s) 1111
MflI RGATCY 4 cut(s) 151, 219, 388, 444
MhlI GDGCHC 2 cut(s) 576, 1187
MluCI AATT 3 cut(s) 832, 986, 1111
MlyI GAGTC 2 cut(s) 109, 339
MmeI TCCRAC 4 cut(s) 439, 636, 735, 873
Mph1103I ATGCAT 1 cut(s) 264
MroI TCCGGA 2 cut(s) 154, 343
MroXI GAANNNNTTC 1 cut(s) 410
MseI TTAA 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 528
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 5 cut(s) 141, 149, 155, 344, 1136
MspR9I CCNGG 2 cut(s) 142, 720
MunI CAATTG 1 cut(s) 1111
MvaI CCWGG 1 cut(s) 720
MvnI CGCG 4 cut(s) 380, 519, 674, 983
MwoI GCNNNNNNNGC 7 cut(s) 456, 465, 519, 594, 671, 1113, 1139
NciI CCSGG 1 cut(s) 142
NcoI CCATGG 1 cut(s) 284
NdeII GATC 9 cut(s) 82, 151, 202, 219, 388, 444, 599, 877, 972
NlaIII CATG 5 cut(s) 288, 357, 629, 1025, 1210
NlaIV GGNNCC 6 cut(s) 106, 153, 245, 348, 695, 1149
NmeAIII GCCGAG 1 cut(s) 566
NmuCI GTSAC 2 cut(s) 112, 530
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 3 cut(s) 357, 1025, 1210
OliI CACNNNNGTG 1 cut(s) 528
PciI ACATGT 2 cut(s) 353, 1206
PciSI GCTCTTC 1 cut(s) 902
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 410
PfeI GAWTC 3 cut(s) 197, 250, 399
Pfl23II CGTACG 1 cut(s) 592
PflFI GACNNNGTC 1 cut(s) 889
PkrI GCNGC 4 cut(s) 521, 539, 633, 1141
PleI GAGTC 2 cut(s) 109, 338
PpsI GAGTC 2 cut(s) 109, 338
Ppu21I YACGTR 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 694
PscI ACATGT 2 cut(s) 353, 1206
Psp1406I AACGTT 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 694
Psp6I CCWGG 1 cut(s) 718
PspGI CCWGG 1 cut(s) 718
PspLI CGTACG 1 cut(s) 592
PspN4I GGNNCC 6 cut(s) 106, 153, 245, 348, 695, 1149
PspPI GGNCC 3 cut(s) 244, 694, 707
PspPPI RGGWCCY 1 cut(s) 694
PsuI RGATCY 4 cut(s) 151, 219, 388, 444
PsyI GACNNNGTC 1 cut(s) 889
RsaI GTAC 3 cut(s) 209, 594, 1174
RsaNI GTAC 3 cut(s) 208, 593, 1173
RseI CAYNNNNRTG 1 cut(s) 528
SacII CCGCGG 1 cut(s) 675
SapI GCTCTTC 1 cut(s) 902
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 4 cut(s) 520, 538, 632, 1140
Sau3AI GATC 9 cut(s) 82, 151, 202, 219, 388, 444, 599, 877, 972
Sau96I GGNCC 3 cut(s) 244, 694, 707
SchI GAGTC 2 cut(s) 109, 339
ScrFI CCNGG 2 cut(s) 142, 720
SduI GDGCHC 2 cut(s) 576, 1187
SfaNI GCATC 3 cut(s) 249, 446, 1083
SfcI CTRYAG 2 cut(s) 254, 864
Sfr303I CCGCGG 1 cut(s) 675
SgrBI CCGCGG 1 cut(s) 675
SinI GGWCC 3 cut(s) 244, 694, 707
SmiMI CAYNNNNRTG 1 cut(s) 528
SnaBI TACGTA 1 cut(s) 211
Sse9I AATT 3 cut(s) 832, 986, 1111
SspMI CTAG 2 cut(s) 194, 935
StyD4I CCNGG 2 cut(s) 140, 718
StyI CCWWGG 2 cut(s) 229, 284
TaaI ACNGT 4 cut(s) 98, 592, 620, 753
TaiI ACGT 4 cut(s) 191, 213, 339, 1190
TaqI TCGA 3 cut(s) 807, 827, 975
TasI AATT 3 cut(s) 832, 986, 1111
TauI GCSGC 2 cut(s) 522, 540
TfiI GAWTC 3 cut(s) 197, 250, 399
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TseFI GTSAC 2 cut(s) 112, 530
TseI GCWGC 2 cut(s) 631, 1139
Tsp45I GTSAC 2 cut(s) 112, 530
TspDTI ATGAA 3 cut(s) 60, 556, 1245
TspGWI ACGGA 2 cut(s) 145, 433
Tth111I GACNNNGTC 1 cut(s) 889
VpaK11BI GGWCC 3 cut(s) 244, 694, 707
XceI RCATGY 3 cut(s) 357, 1025, 1210
XmiI GTMKAC 1 cut(s) 333
XmnI GAANNNNTTC 1 cut(s) 410
XspI CTAG 2 cut(s) 194, 935
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.