Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006002

Physical Location & Seq

Genomic Coordinates Reverse (-)

945723 .. 948855

Gene Structure 3133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1012300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGTTCGACAACACCACCACCACCAACAACAACACCGCCGCCTCTTCTTCCGCTCCTCCGTCTTCTTCCTCTCATGAAAATGGCGGAGCCACCCACAAACGAAAAAGAAGACCTGCAGGCACACCAGATCCGGATGCAGAAGTGGTGTCTCTGTCCCCCAAGACCCTACTCGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAGGGATTTCAGAGAGACCAGAATCTGCAGATGCACAGGCGTCGTCACAAGGTGCCGTGGAAACTACTGAAGCGAGAGATAGCGGAAGATCAGGTGATCAAGAAGAAGGTGTTTGTGTGCCCGGAGCCCAGCTGCCTCCACCACGACCCCCGCCACGCCCTCGGCGATCTCGTCGGGATCAAAAAACACTTCAGAAGAAAACACAGCAACCACAAGCAGTGGGTCTGCGACAAGTGCTCCAAAGGCTACGCCGTGCAGTCCGATTACAAAGCACACCTCAAAACCTGCGGCACCAGAGGACATTCCTGTGACTGCGGCCGTGTCTTTTCGAGAGTGGAAAGTTTCATAGAGCACCAAGACACTTGCACAGTCCGACACGTCGTTCGGCCGGAATTACAGGCAGCGCTGCAGCCGGCGGCCTGCTCGTCGCGAACTGCATCGAGTACCAGCCCCTCTAGCGACGCCAATTTCAGCATTAGTAACAATGTGGCAGCTCCAGTAGTATTGGCTGGACTCCCGGTGCGACCAAACCCAACTCACCATCACGATAAGCGCGACGGTATGAATCCTTATATTTCTTGCAACCGTCAGCAACAGCAACAGCAGCAGCAACAACAAGCGCATAATAATATATTGGAACTTCAGCTCCTTCCGTCCTCAAACGCCCATACTTCTTCCCCGCCAAATTTAGACGAAAGTCACGCAACTAATCTGAAGCTATCGATTGGATCGCCGTCAAGTGATCAACTTGCCAACGAAAAGAATGAATCAAGCAAGTATAATTCATCGTCCGATATAAAAAGAAGAAGAAGCTCTCCAGGTAATGAGAAGAATGTTAACAATGCATCTGCTGTTGGAGGAGTTGGGTCGACGTCGGAACTGGCCAGGTTGAAAGAGTTTGCGAGTGAGGAGTTGAAATTGGCCGTGGCTGAAAAGTCGTATGCCGAAGACGCCCGGCGAGAAGCCAAACGGCAAATAGAGATGGCGGAGATCGAGTTCGCGAACGCCAAGAGGATTAGGCAGCAAGCGCAGGCTGAGGTGGAGAAGGCTCTGTTGCTCAAAGAGCAGGCGACTAAGAGAATCAGCTCCGCCATTTTGCAAGTCACTTGTCAAGCTTGCAAACAGCACTTTCACATTGCCTCTGCTGCTTCCACCGTCGCAGGAGGAGGAGCAGTGGGACGCTCTGATGAGACCTCCCTTGCTATGAGTTACATGTCCTCCGCCACAACCGAAGGAGAAGGAGATCATGACCACACAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009581 GO:0009582 GO:0009590 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009959 GO:0009965 GO:0010016 GO:0010031 GO:0010468 GO:0010556 GO:0010600 GO:0010601 GO:0010675 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032879 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044212 GO:0044424 GO:0044464 GO:0046885 GO:0046886 GO:0046982 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050879 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051606 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0090354 GO:0090355 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000112 GO:2000904 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

489

Amino Acids

53.6

Weight (kDa)

8.96

Isoelectric Point (pI)

73.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-2nd_BIRD-IDD	PF22996	102 - 136	9.5e-19	BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD	PF22995	141 - 165	4.2e-14	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25250 AT1G25250 AT1G25250 AT1G68130 AT1G68130
fragaria_vesca	FvH4_5g17840
malus_domestica	MD06G1234600.v1.1 MD13G1015000.v1.1 MD14G1241600.v1.1 MD16G1012300.v1.1
prunus_persica	Prupe.1G338700_v2.0.a1 Prupe.5G239100_v2.0.a1
pyrus_communis	pycom06g20930 pycom13g01270 pycom14g20290 pycom16g01170
rosa_chinensis	RchiOBHm_Chr7g0177741
rosa_laevigata	RLG00000005509
rosa_multiflora	Rmu_sc0004786.1_g000006
rosa_roxburghii	Rroxscaffold_3G00275600
rosa_rugosa	Rorug06G0409000 Rorug06G0409100
rosa_samantha	Rh7AG008500 Rh7BG008500 Rh7CG008900 Rh7DG008600
rosa_wichuraiana	Rw7G000710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1079
Acc36I	ACCTGC	2 cut(s)	121, 497
AccB1I	GGYRCC	2 cut(s)	256, 494
AccBSI	CCGCTC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	1073
AccII	CGCG	3 cut(s)	634, 759, 1205
AccIII	TCCGGA	1 cut(s)	130
AclWI	GGATC	3 cut(s)	122, 389, 940
AcoI	YGGCCR	4 cut(s)	520, 590, 1086, 1125
AcsI	RAATTY	1 cut(s)	889
AcuI	CTGAAG	4 cut(s)	293, 379, 830, 938
AcyI	GRCGYC	4 cut(s)	244, 666, 1076, 1155
AdeI	CACNNNGTG	1 cut(s)	256
AfaI	GTAC	2 cut(s)	185, 649
AfeI	AGCGCT	1 cut(s)	609
AflIII	ACRYGT	3 cut(s)	186, 580, 1416
AgeI	ACCGGT	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	1096, 1120
AjiI	CACGTC	1 cut(s)	583
AjnI	CCWGG	3 cut(s)	204, 1021, 1088
AloI	GAACNNNNNNTCC	4 cut(s)	834, 866, 1184, 1216
AluBI	AGCT	7 cut(s)	336, 698, 850, 922, 1017, 1290, 1319
AluI	AGCT	7 cut(s)	336, 698, 850, 922, 1017, 1290, 1319
Alw21I	GWGCWC	2 cut(s)	443, 558
Alw26I	GTCTC	3 cut(s)	153, 213, 1388
AlwI	GGATC	3 cut(s)	122, 389, 940
AlwNI	CAGNNNCTG	1 cut(s)	229
Aor13HI	TCCGGA	1 cut(s)	130
Aor51HI	AGCGCT	1 cut(s)	609
AoxI	GGCC	5 cut(s)	520, 590, 621, 1086, 1125
ApeKI	GCWGC	9 cut(s)	336, 605, 610, 613, 695, 808, 811, 1225, 1349
ApoI	RAATTY	1 cut(s)	889
ArsI	GACNNNNNNTTYG	2 cut(s)	570, 602
AsiGI	ACCGGT	1 cut(s)	180
AspLEI	GCGC	4 cut(s)	610, 759, 826, 1234
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	3 cut(s)	326, 722, 1159
AsuHPI	GGTGA	2 cut(s)	310, 734
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	1088
BanI	GGYRCC	2 cut(s)	256, 494
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	3 cut(s)	54, 115, 1158
Bbv12I	GWGCWC	2 cut(s)	443, 558
BbvCI	CCTCAGC	1 cut(s)	1239
BbvI	GCAGC	9 cut(s)	323, 597, 617, 625, 707, 820, 823, 1237, 1336
BccI	CCATC	2 cut(s)	753, 1180
BceAI	ACGGC	6 cut(s)	244, 440, 507, 922, 1112, 1190
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	3 cut(s)	206, 1023, 1090
BclI	TGATCA	2 cut(s)	300, 946
BcnI	CCSGG	3 cut(s)	326, 722, 1159
BcoDI	GTCTC	3 cut(s)	153, 213, 1388
BfaI	CTAG	1 cut(s)	660
BfmI	CTRYAG	3 cut(s)	114, 230, 611
BfoI	RGCGCY	1 cut(s)	611
BfuAI	ACCTGC	2 cut(s)	121, 497
BglII	AGATCT	1 cut(s)	195
Bme1390I	CCNGG	6 cut(s)	206, 326, 722, 1023, 1090, 1159
Bme18I	GGWCC	1 cut(s)	178
BmgBI	CACGTC	1 cut(s)	583
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	4 cut(s)	88, 258, 330, 496
BmrFI	CCNGG	6 cut(s)	206, 326, 722, 1023, 1090, 1159
BmsI	GCATC	4 cut(s)	124, 225, 650, 1058
BoxI	GACNNNNGTC	1 cut(s)	900
BpiI	GAAGAC	3 cut(s)	54, 115, 1158
BpmI	CTGGAG	2 cut(s)	684, 1005
Bpu10I	CCTNAGC	1 cut(s)	1239
BpuMI	CCSGG	3 cut(s)	326, 722, 1159
Bsa29I	ATCGAT	1 cut(s)	926
BsaAI	YACGTR	1 cut(s)	187
BsaHI	GRCGYC	4 cut(s)	244, 666, 1076, 1155
BsaI	GGTCTC	2 cut(s)	213, 1388
BsaJI	CCNNGG	4 cut(s)	205, 260, 364, 1128
BsaWI	WCCGGW	2 cut(s)	130, 180
Bse118I	RCCGGY	2 cut(s)	180, 616
Bse1I	ACTGG	2 cut(s)	701, 1089
Bse3DI	GCAATG	1 cut(s)	1338
BseAI	TCCGGA	1 cut(s)	130
BseBI	CCWGG	3 cut(s)	206, 1023, 1090
BseCI	ATCGAT	1 cut(s)	926
BseDI	CCNNGG	4 cut(s)	205, 260, 364, 1128
BseGI	GGATG	1 cut(s)	139
BseMI	GCAATG	1 cut(s)	1338
BseMII	CTCAG	1 cut(s)	1230
BseNI	ACTGG	2 cut(s)	701, 1089
BseRI	GAGGAG	5 cut(s)	45, 1077, 1127, 1383, 1386
BseSI	GKGCMC	1 cut(s)	326
BseX3I	CGGCCG	2 cut(s)	520, 590
BseXI	GCAGC	9 cut(s)	323, 597, 617, 625, 707, 820, 823, 1237, 1336
BseYI	CCCAGC	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	479
Bsh1236I	CGCG	3 cut(s)	634, 759, 1205
Bsh1285I	CGRYCG	2 cut(s)	523, 593
BshFI	GGCC	5 cut(s)	522, 592, 623, 1088, 1127
BshNI	GGYRCC	2 cut(s)	256, 494
BshTI	ACCGGT	1 cut(s)	180
BshVI	ATCGAT	1 cut(s)	926
BsiEI	CGRYCG	2 cut(s)	523, 593
BsiHKAI	GWGCWC	2 cut(s)	443, 558
BsiSI	CCGG	7 cut(s)	131, 181, 326, 593, 617, 722, 1159
BslFI	GGGAC	2 cut(s)	139, 1395
BsmAI	GTCTC	3 cut(s)	153, 213, 1388
BsmFI	GGGAC	2 cut(s)	139, 1395
BsnI	GGCC	5 cut(s)	522, 592, 623, 1088, 1127
Bso31I	GGTCTC	2 cut(s)	213, 1388
Bsp1286I	GDGCHC	4 cut(s)	326, 333, 443, 558
Bsp13I	TCCGGA	1 cut(s)	130
Bsp68I	TCGCGA	2 cut(s)	634, 1205
BspANI	GGCC	5 cut(s)	522, 592, 623, 1088, 1127
BspCNI	CTCAG	1 cut(s)	1231
BspDI	ATCGAT	1 cut(s)	926
BspEI	TCCGGA	1 cut(s)	130
BspFNI	CGCG	3 cut(s)	634, 759, 1205
BspHI	TCATGA	2 cut(s)	73, 1450
BspLI	GGNNCC	4 cut(s)	88, 258, 330, 496
BspMAI	CTGCAG	3 cut(s)	118, 234, 615
BspMI	ACCTGC	2 cut(s)	121, 497
BspPI	GGATC	3 cut(s)	122, 389, 940
BspT107I	GGYRCC	2 cut(s)	256, 494
BspTNI	GGTCTC	2 cut(s)	213, 1388
BsrBI	CCGCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	1338
BsrFI	RCCGGY	2 cut(s)	180, 616
BsrI	ACTGG	2 cut(s)	701, 1089
BssAI	RCCGGY	2 cut(s)	180, 616
BssECI	CCNNGG	4 cut(s)	205, 260, 364, 1128
BssNI	GRCGYC	4 cut(s)	244, 666, 1076, 1155
Bst2UI	CCWGG	3 cut(s)	206, 1023, 1090
Bst4CI	ACNGT	4 cut(s)	574, 764, 791, 1360
Bst6I	CTCTTC	1 cut(s)	49
BstACI	GRCGYC	4 cut(s)	244, 666, 1076, 1155
BstBAI	YACGTR	1 cut(s)	187
BstC8I	GCNNGC	7 cut(s)	118, 618, 625, 1230, 1236, 1272, 1321
BstDEI	CTNAG	2 cut(s)	1239, 1278
BstDSI	CCRYGG	2 cut(s)	260, 1128
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	3 cut(s)	634, 759, 1205
BstH2I	RGCGCY	1 cut(s)	611
BstHHI	GCGC	4 cut(s)	610, 759, 826, 1234
BstMAI	GTCTC	3 cut(s)	153, 213, 1388
BstMCI	CGRYCG	2 cut(s)	523, 593
BstMWI	GCNNNNNNNGC	9 cut(s)	198, 438, 447, 660, 808, 1154, 1231, 1267, 1349
BstNI	CCWGG	3 cut(s)	206, 1023, 1090
BstNSI	RCATGY	1 cut(s)	1420
BstPAI	GACNNNNGTC	1 cut(s)	900
BstSCI	CCNGG	6 cut(s)	204, 324, 720, 1021, 1088, 1157
BstSFI	CTRYAG	3 cut(s)	114, 230, 611
BstSLI	GKGCMC	1 cut(s)	326
BstUI	CGCG	3 cut(s)	634, 759, 1205
BstV1I	GCAGC	9 cut(s)	323, 597, 617, 625, 707, 820, 823, 1237, 1336
BstV2I	GAAGAC	3 cut(s)	54, 115, 1158
BstX2I	RGATCY	2 cut(s)	127, 195
BstYI	RGATCY	2 cut(s)	127, 195
BstZI	CGGCCG	2 cut(s)	520, 590
Bsu15I	ATCGAT	1 cut(s)	926
BsuRI	GGCC	5 cut(s)	522, 592, 623, 1088, 1127
BsuTUI	ATCGAT	1 cut(s)	926
BtgI	CCRYGG	2 cut(s)	260, 1128
BtrI	CACGTC	1 cut(s)	583
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	2 cut(s)	428, 1383
BtsIMutI	CAGTG	2 cut(s)	428, 1383
BtuMI	TCGCGA	2 cut(s)	634, 1205
BveI	ACCTGC	2 cut(s)	121, 497
Cac8I	GCNNGC	7 cut(s)	118, 618, 625, 1230, 1236, 1272, 1321
CaiI	CAGNNNCTG	1 cut(s)	229
CciI	TCATGA	2 cut(s)	73, 1450
CfoI	GCGC	4 cut(s)	610, 759, 826, 1234
Cfr10I	RCCGGY	2 cut(s)	180, 616
Cfr13I	GGNCC	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	926
CpoI	CGGWCCG	1 cut(s)	178
CseI	GACGC	4 cut(s)	233, 674, 1163, 1392
Csp6I	GTAC	2 cut(s)	184, 648
CspAI	ACCGGT	1 cut(s)	180
CspI	CGGWCCG	1 cut(s)	178
CviAII	CATG	3 cut(s)	74, 1417, 1451
CviQI	GTAC	2 cut(s)	184, 648
DdeI	CTNAG	2 cut(s)	1239, 1278
DraIII	CACNNNGTG	1 cut(s)	256
EaeI	YGGCCR	4 cut(s)	520, 590, 1086, 1125
EagI	CGGCCG	2 cut(s)	520, 590
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
EciI	GGCGGA	4 cut(s)	99, 1205, 1282, 1414
EclXI	CGGCCG	2 cut(s)	520, 590
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	213, 1388
Eco47I	GGWCC	1 cut(s)	178
Eco47III	AGCGCT	1 cut(s)	609
Eco52I	CGGCCG	2 cut(s)	520, 590
Eco57I	CTGAAG	4 cut(s)	293, 379, 830, 938
EcoRII	CCWGG	3 cut(s)	204, 1021, 1088
EcoT22I	ATGCAT	1 cut(s)	1051
EcoT38I	GRGCYC	1 cut(s)	333
FaeI	CATG	3 cut(s)	77, 1420, 1454
FaqI	GGGAC	2 cut(s)	139, 1395
FatI	CATG	3 cut(s)	73, 1416, 1450
FauI	CCCGC	2 cut(s)	362, 891
FbaI	TGATCA	2 cut(s)	300, 946
FblI	GTMKAC	1 cut(s)	1073
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	333
FspBI	CTAG	1 cut(s)	660
GlaI	GCGC	4 cut(s)	609, 758, 825, 1233
GsaI	CCCAGC	1 cut(s)	336
GsuI	CTGGAG	2 cut(s)	684, 1005
HaeII	RGCGCY	1 cut(s)	611
HaeIII	GGCC	5 cut(s)	522, 592, 623, 1088, 1127
HapII	CCGG	7 cut(s)	131, 181, 326, 593, 617, 722, 1159
HgaI	GACGC	4 cut(s)	233, 674, 1163, 1392
HhaI	GCGC	4 cut(s)	610, 759, 826, 1234
Hin1I	GRCGYC	4 cut(s)	244, 666, 1076, 1155
Hin1II	CATG	3 cut(s)	77, 1420, 1454
Hin6I	GCGC	4 cut(s)	608, 757, 824, 1232
HinP1I	GCGC	4 cut(s)	608, 757, 824, 1232
HincII	GTYRAC	2 cut(s)	1042, 1074
HindII	GTYRAC	2 cut(s)	1042, 1074
HindIII	AAGCTT	1 cut(s)	1317
HinfI	GANTC	6 cut(s)	173, 226, 717, 769, 971, 1284
HpaI	GTTAAC	1 cut(s)	1042
HpaII	CCGG	7 cut(s)	131, 181, 326, 593, 617, 722, 1159
HphI	GGTGA	2 cut(s)	310, 734
Hpy166II	GTNNAC	2 cut(s)	1042, 1074
Hpy188I	TCNGA	9 cut(s)	178, 216, 398, 466, 578, 918, 997, 1081, 1390
Hpy188III	TCNNGA	9 cut(s)	74, 131, 304, 379, 534, 633, 749, 1204, 1451
Hpy8I	GTNNAC	2 cut(s)	1042, 1074
Hpy99I	CGWCG	9 cut(s)	249, 380, 587, 634, 668, 764, 1078, 1081, 1364
HpyAV	CCTTC	5 cut(s)	304, 863, 1243, 1430, 1436
HpyCH4III	ACNGT	4 cut(s)	574, 764, 791, 1360
HpyCH4IV	ACGT	3 cut(s)	186, 582, 1076
HpyF10VI	GCNNNNNNNGC	9 cut(s)	198, 438, 447, 660, 808, 1154, 1231, 1267, 1349
HpyF3I	CTNAG	2 cut(s)	1239, 1278
HpySE526I	ACGT	3 cut(s)	186, 582, 1076
Hsp92I	GRCGYC	4 cut(s)	244, 666, 1076, 1155
Hsp92II	CATG	3 cut(s)	77, 1420, 1454
HspAI	GCGC	4 cut(s)	608, 757, 824, 1232
Kpn2I	TCCGGA	1 cut(s)	130
KroI	GCCGGC	1 cut(s)	616
KroNI	GCCGGC	1 cut(s)	618
Ksp22I	TGATCA	2 cut(s)	300, 946
KspAI	GTTAAC	1 cut(s)	1042
LmnI	GCTCC	8 cut(s)	58, 86, 328, 446, 703, 855, 1295, 1373
Lsp1109I	GCAGC	9 cut(s)	323, 597, 617, 625, 707, 820, 823, 1237, 1336
LweI	GCATC	4 cut(s)	124, 225, 650, 1058
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	3 cut(s)	186, 582, 1076
MaeIII	GTNAC	6 cut(s)	248, 512, 683, 902, 1306, 1412
MbiI	CCGCTC	1 cut(s)	53
MflI	RGATCY	2 cut(s)	127, 195
MhlI	GDGCHC	4 cut(s)	326, 333, 443, 558
MlsI	TGGCCA	1 cut(s)	1088
MluCI	AATT	5 cut(s)	596, 670, 889, 985, 1121
MluNI	TGGCCA	1 cut(s)	1088
MlyI	GAGTC	1 cut(s)	711
MmeI	TCCRAC	3 cut(s)	601, 1039, 1059
Mox20I	TGGCCA	1 cut(s)	1088
Mph1103I	ATGCAT	1 cut(s)	1051
MroI	TCCGGA	1 cut(s)	130
MroNI	GCCGGC	1 cut(s)	616
MscI	TGGCCA	1 cut(s)	1088
MseI	TTAA	1 cut(s)	1041
MslI	CAYNNNNRTG	2 cut(s)	78, 510
Msp20I	TGGCCA	1 cut(s)	1088
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	7 cut(s)	131, 181, 326, 593, 617, 722, 1159
MspR9I	CCNGG	6 cut(s)	206, 326, 722, 1023, 1090, 1159
MvaI	CCWGG	3 cut(s)	206, 1023, 1090
MvnI	CGCG	3 cut(s)	634, 759, 1205
MwoI	GCNNNNNNNGC	9 cut(s)	198, 438, 447, 660, 808, 1154, 1231, 1267, 1349
NaeI	GCCGGC	1 cut(s)	618
NciI	CCSGG	3 cut(s)	326, 722, 1159
NgoMIV	GCCGGC	1 cut(s)	616
NlaIII	CATG	3 cut(s)	77, 1420, 1454
NlaIV	GGNNCC	4 cut(s)	88, 258, 330, 496
NmeAIII	GCCGAG	1 cut(s)	345
NmuCI	GTSAC	4 cut(s)	248, 512, 902, 1306
NruI	TCGCGA	2 cut(s)	634, 1205
NsiI	ATGCAT	1 cut(s)	1051
NspI	RCATGY	1 cut(s)	1420
PagI	TCATGA	2 cut(s)	73, 1450
PciI	ACATGT	1 cut(s)	1416
PcsI	WCGNNNNNNNCGW	3 cut(s)	366, 372, 756
PdiI	GCCGGC	1 cut(s)	618
PfeI	GAWTC	5 cut(s)	173, 226, 769, 971, 1284
PinAI	ACCGGT	1 cut(s)	180
PleI	GAGTC	1 cut(s)	711
PpsI	GAGTC	1 cut(s)	711
Ppu21I	YACGTR	1 cut(s)	187
PscI	ACATGT	1 cut(s)	1416
PshAI	GACNNNNGTC	1 cut(s)	900
Psp6I	CCWGG	3 cut(s)	204, 1021, 1088
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	3 cut(s)	204, 1021, 1088
PspN4I	GGNNCC	4 cut(s)	88, 258, 330, 496
PspPI	GGNCC	1 cut(s)	178
PstI	CTGCAG	3 cut(s)	118, 234, 615
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	2 cut(s)	127, 195
PvuII	CAGCTG	1 cut(s)	336
RruI	TCGCGA	2 cut(s)	634, 1205
RsaI	GTAC	2 cut(s)	185, 649
RsaNI	GTAC	2 cut(s)	184, 648
RseI	CAYNNNNRTG	2 cut(s)	78, 510
Rsr2I	CGGWCCG	1 cut(s)	178
RsrII	CGGWCCG	1 cut(s)	178
SalI	GTCGAC	1 cut(s)	1072
SaqAI	TTAA	1 cut(s)	1041
Sau96I	GGNCC	1 cut(s)	178
SbfI	CCTGCAGG	1 cut(s)	118
SchI	GAGTC	1 cut(s)	711
ScrFI	CCNGG	6 cut(s)	206, 326, 722, 1023, 1090, 1159
SdaI	CCTGCAGG	1 cut(s)	118
SduI	GDGCHC	4 cut(s)	326, 333, 443, 558
SfaNI	GCATC	4 cut(s)	124, 225, 650, 1058
SfcI	CTRYAG	3 cut(s)	114, 230, 611
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	78, 510
Sse8387I	CCTGCAGG	1 cut(s)	118
Sse9I	AATT	5 cut(s)	596, 670, 889, 985, 1121
SspMI	CTAG	1 cut(s)	660
StyD4I	CCNGG	6 cut(s)	204, 324, 720, 1021, 1088, 1157
TaaI	ACNGT	4 cut(s)	574, 764, 791, 1360
TaiI	ACGT	3 cut(s)	189, 585, 1079
TaqI	TCGA	7 cut(s)	6, 171, 533, 644, 926, 1073, 1197
TasI	AATT	5 cut(s)	596, 670, 889, 985, 1121
TauI	GCSGC	4 cut(s)	41, 495, 522, 623
TfiI	GAWTC	5 cut(s)	173, 226, 769, 971, 1284
Tru1I	TTAA	1 cut(s)	1041
Tru9I	TTAA	1 cut(s)	1041
TscAI	CASTG	2 cut(s)	428, 1383
TseFI	GTSAC	4 cut(s)	248, 512, 902, 1306
TseI	GCWGC	9 cut(s)	336, 605, 610, 613, 695, 808, 811, 1225, 1349
Tsp45I	GTSAC	4 cut(s)	248, 512, 902, 1306
TspDTI	ATGAA	5 cut(s)	90, 538, 782, 978, 984
TspGWI	ACGGA	2 cut(s)	48, 846
TspRI	CASTG	2 cut(s)	428, 1383
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	1 cut(s)	889
XceI	RCATGY	1 cut(s)	1420
XmiI	GTMKAC	1 cut(s)	1073
XspI	CTAG	1 cut(s)	660
ZraI	GACGTC	1 cut(s)	1077
Zsp2I	ATGCAT	1 cut(s)	1051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.