pycom13g01270

Protein SHOOT GRAVITROPISM

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
833984 .. 836031
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g01270.2

Sequence Viewer

Length: 1221 bp
ATGCACAGGAGGCGACACAAGGTGCCGTGGAAGCTGCTGAAGCGAGAGCTAGCGGAAGATCAGGTGATCAAGAAGCGGGTGTTCGTGTGCCCGGAGCCCAGCTGCCTCCACCACGACCCCTCCCACGCCCTCGGCGATCTCGTCGGAATCAAAAAACACTTCAGAAGAAAACACAGCAACCACAAGCAGTGGGTCTGCGACAAGTGCTCCAAAGGCTACGCCGTTCAGTCCGATTACAAAGCACATCTCAAAACCTGCGGCACCAGAGGACATTCCTGTGACTGCGGCCGGGTCTTTTCAAGAGTGGAAAGTTTCATAGAGCACCAAGACACTTGCACAGTCCGACACGTGGTCCTGCCAGAGTTACAGGCAGCATTACAGCCGGCGGCCTGCTCGTCGCGAACCGCATCGAGTACAAGCCCCTCCAGTGACACCAATTTCAGCATTAGTAACAATGTGGCAGCTCCAGTAGTATTGGCTGGACTCCCGGTGCGACCAAACCCAACTGACCATCACGATCAGCGTGACGGTATGAATGCTTATATTTCTTGCAACCGCCAGCAGCAGCAGCAACAACAACAAGTGCATAAAAATATATTGGAACTTCAGCTCCTTCCGTCGTCAAACGCGCATACTTCTTCCCCGCCAAATTTAGACAAAGGTTACGCAACTAATCTGAAGCTCTCGATTGGGTCCCCGTCAAGTGATCAGCTTGACAACGAAAAGAATGAATCAAGCAAGTATAATTCATCACACATAATAAGAAGAAGAAGCTCTCCAGGTGATGAGAATGAATCGGCTCTTGGAGGAGTTGGGCCCGCATCGGATGTGGCCAGGTTGAAAGAGTTTGCAAGTGAGGAGCTGAAGTTGGCCGTGGCTGAAAAGTCTTACGCGGAAGACGCCCGGCGAGAAGCCAAACGGCAGATAGAGATGGCGGAGATCGAGTTTGCGAACGCCAAGAGGATCAGGCAGCAAGCACAGGCTGAGGTGGAGAAGGCTCAGTTGCTCAAAGAGCAGGCAACTAAGAGAATCAGCTCCGCCATTTTGCAAATCACTTGTCAAGCTTGCAAGCAACATTTTCACATTGCCTCTGCTGCTTCCGCCGCCGCAGGAGGAGGAGCACTGGGAGGAGTGGGACCCTCTGATGAGACATCCCTGGCTATGAGTTACATGTCCTCCGCCACAACCGAAGGAGAAGGAGATCATGATCACACCACATAA

Protein Analysis

407

Amino Acids

44.56

Weight (kDa)

8.64

Isoelectric Point (pI)

75.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
AccB1I GGYRCC 2 cut(s) 22, 260
AccII CGCG 3 cut(s) 400, 629, 893
AclWI GGATC 1 cut(s) 971
AcoI YGGCCR 3 cut(s) 286, 831, 870
AcsI RAATTY 1 cut(s) 649
AcuI CTGAAG 5 cut(s) 59, 145, 590, 698, 884
AcvI CACGTG 1 cut(s) 349
AcyI GRCGYC 1 cut(s) 900
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 1 cut(s) 349
AflIII ACRYGT 2 cut(s) 346, 1170
AgsI TTSAA 2 cut(s) 300, 841
AhdI GACNNNNNGTC 1 cut(s) 350
AjnI CCWGG 3 cut(s) 778, 833, 1155
AjuI GAANNNNNNNTTGG 2 cut(s) 786, 818
AloI GAACNNNNNNTCC 2 cut(s) 594, 626
Alw21I GWGCWC 3 cut(s) 209, 324, 1123
Alw26I GTCTC 1 cut(s) 1142
AlwI GGATC 1 cut(s) 971
AoxI GGCC 5 cut(s) 286, 387, 815, 831, 870
ApaI GGGCCC 1 cut(s) 819
ApeKI GCWGC 9 cut(s) 34, 102, 371, 461, 562, 565, 568, 970, 1094
ApoI RAATTY 1 cut(s) 649
ArsI GACNNNNNNTTYG 2 cut(s) 1042, 1074
AspLEI GCGC 1 cut(s) 631
AspS9I GGNCC 5 cut(s) 352, 693, 815, 816, 1136
AsuC2I CCSGG 4 cut(s) 92, 290, 488, 904
AsuHPI GGTGA 2 cut(s) 76, 794
AsuNHI GCTAGC 1 cut(s) 49
AvaII GGWCC 3 cut(s) 352, 693, 1136
BaeGI GKGCMC 2 cut(s) 92, 819
BalI TGGCCA 1 cut(s) 833
BanI GGYRCC 2 cut(s) 22, 260
BanII GRGCYC 2 cut(s) 99, 819
BbrPI CACGTG 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 903
Bbv12I GWGCWC 3 cut(s) 209, 324, 1123
BbvCI CCTCAGC 1 cut(s) 984
BbvI GCAGC 9 cut(s) 21, 89, 383, 473, 574, 577, 580, 982, 1081
BccI CCATC 2 cut(s) 519, 925
BceAI ACGGC 4 cut(s) 10, 206, 857, 935
BciT130I CCWGG 3 cut(s) 780, 835, 1157
BclI TGATCA 3 cut(s) 66, 706, 1207
BcnI CCSGG 4 cut(s) 92, 290, 488, 904
BcoDI GTCTC 1 cut(s) 1142
BfaI CTAG 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 263
Bme1390I CCNGG 7 cut(s) 92, 290, 488, 780, 835, 904, 1157
Bme18I GGWCC 3 cut(s) 352, 693, 1136
BmeRI GACNNNNNGTC 1 cut(s) 350
BmgT120I GGNCC 5 cut(s) 352, 693, 815, 816, 1136
BmiI GGNNCC 8 cut(s) 24, 96, 262, 694, 695, 817, 1137, 1138
BmrFI CCNGG 7 cut(s) 92, 290, 488, 780, 835, 904, 1157
BmrI ACTGGG 1 cut(s) 1133
BmsI GCATC 2 cut(s) 416, 830
BmtI GCTAGC 1 cut(s) 53
BmuI ACTGGG 1 cut(s) 1133
BpiI GAAGAC 1 cut(s) 903
BpmI CTGGAG 3 cut(s) 409, 450, 762
Bpu10I CCTNAGC 1 cut(s) 984
BpuMI CCSGG 4 cut(s) 92, 290, 488, 904
BsaAI YACGTR 1 cut(s) 349
BsaBI GATNNNNATC 1 cut(s) 1206
BsaHI GRCGYC 1 cut(s) 900
BsaJI CCNNGG 4 cut(s) 26, 130, 873, 1155
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 3 cut(s) 426, 467, 1128
Bse3DI GCAATG 1 cut(s) 1083
Bse8I GATNNNNATC 1 cut(s) 1206
BseBI CCWGG 3 cut(s) 780, 835, 1157
BseDI CCNNGG 4 cut(s) 26, 130, 873, 1155
BseGI GGATG 2 cut(s) 832, 1151
BseJI GATNNNNATC 1 cut(s) 1206
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMI GCAATG 1 cut(s) 1083
BseMII CTCAG 2 cut(s) 975, 1013
BseNI ACTGG 3 cut(s) 426, 467, 1128
BseRI GAGGAG 5 cut(s) 822, 872, 1128, 1131, 1143
BseSI GKGCMC 2 cut(s) 92, 819
BseX3I CGGCCG 1 cut(s) 286
BseXI GCAGC 9 cut(s) 21, 89, 383, 473, 574, 577, 580, 982, 1081
BseYI CCCAGC 1 cut(s) 98
Bsh1236I CGCG 3 cut(s) 400, 629, 893
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 5 cut(s) 288, 389, 817, 833, 872
BshNI GGYRCC 2 cut(s) 22, 260
BsiEI CGRYCG 1 cut(s) 289
BsiHKAI GWGCWC 3 cut(s) 209, 324, 1123
BsiSI CCGG 5 cut(s) 92, 289, 383, 488, 904
BslFI GGGAC 2 cut(s) 679, 1149
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 1142
BsmFI GGGAC 2 cut(s) 679, 1149
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 5 cut(s) 288, 389, 817, 833, 872
Bsp120I GGGCCC 1 cut(s) 815
Bsp1286I GDGCHC 6 cut(s) 92, 99, 209, 324, 819, 1123
Bsp143I GATC 9 cut(s) 58, 66, 136, 517, 706, 939, 963, 1201, 1207
Bsp68I TCGCGA 1 cut(s) 400
BspANI GGCC 5 cut(s) 288, 389, 817, 833, 872
BspCNI CTCAG 2 cut(s) 976, 1012
BspFNI CGCG 3 cut(s) 400, 629, 893
BspHI TCATGA 1 cut(s) 1204
BspLI GGNNCC 8 cut(s) 24, 96, 262, 694, 695, 817, 1137, 1138
BspMI ACCTGC 1 cut(s) 263
BspOI GCTAGC 1 cut(s) 53
BspPI GGATC 1 cut(s) 971
BspT107I GGYRCC 2 cut(s) 22, 260
BsrDI GCAATG 1 cut(s) 1083
BsrFI RCCGGY 1 cut(s) 382
BsrI ACTGG 3 cut(s) 426, 467, 1128
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 4 cut(s) 26, 130, 873, 1155
BssMI GATC 9 cut(s) 58, 66, 136, 517, 706, 939, 963, 1201, 1207
BssNI GRCGYC 1 cut(s) 900
Bst2UI CCWGG 3 cut(s) 780, 835, 1157
Bst4CI ACNGT 2 cut(s) 340, 530
BstACI GRCGYC 1 cut(s) 900
BstBAI YACGTR 1 cut(s) 349
BstC8I GCNNGC 9 cut(s) 51, 384, 391, 560, 819, 975, 1017, 1066, 1070
BstDEI CTNAG 3 cut(s) 984, 999, 1023
BstDSI CCRYGG 2 cut(s) 26, 873
BstF5I GGATG 2 cut(s) 832, 1151
BstFNI CGCG 3 cut(s) 400, 629, 893
BstHHI GCGC 1 cut(s) 631
BstKTI GATC 9 cut(s) 61, 69, 139, 520, 709, 942, 966, 1204, 1210
BstMAI GTCTC 1 cut(s) 1142
BstMBI GATC 9 cut(s) 58, 66, 136, 517, 706, 939, 963, 1201, 1207
BstMCI CGRYCG 1 cut(s) 289
BstNI CCWGG 3 cut(s) 780, 835, 1157
BstNSI RCATGY 1 cut(s) 1174
BstSCI CCNGG 7 cut(s) 90, 288, 486, 778, 833, 902, 1155
BstSLI GKGCMC 2 cut(s) 92, 819
BstUI CGCG 3 cut(s) 400, 629, 893
BstV1I GCAGC 9 cut(s) 21, 89, 383, 473, 574, 577, 580, 982, 1081
BstV2I GAAGAC 1 cut(s) 903
BstZI CGGCCG 1 cut(s) 286
BsuRI GGCC 5 cut(s) 288, 389, 817, 833, 872
BtgI CCRYGG 2 cut(s) 26, 873
BtsCI GGATG 2 cut(s) 832, 1151
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 3 cut(s) 194, 433, 1121
BtuMI TCGCGA 1 cut(s) 400
BveI ACCTGC 1 cut(s) 263
Cac8I GCNNGC 9 cut(s) 51, 384, 391, 560, 819, 975, 1017, 1066, 1070
CciI TCATGA 1 cut(s) 1204
CfoI GCGC 1 cut(s) 631
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 5 cut(s) 352, 693, 815, 816, 1136
CseI GACGC 1 cut(s) 908
Csp6I GTAC 1 cut(s) 414
CviAII CATG 2 cut(s) 1171, 1205
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 3 cut(s) 984, 999, 1023
DpnI GATC 9 cut(s) 60, 68, 138, 519, 708, 941, 965, 1203, 1209
DpnII GATC 9 cut(s) 58, 66, 136, 517, 706, 939, 963, 1201, 1207
DraIII CACNNNGTG 1 cut(s) 22
DriI GACNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 3 cut(s) 286, 831, 870
EagI CGGCCG 1 cut(s) 286
Eam1105I GACNNNNNGTC 1 cut(s) 350
EciI GGCGGA 4 cut(s) 950, 1027, 1090, 1168
EclXI CGGCCG 1 cut(s) 286
Eco24I GRGCYC 2 cut(s) 99, 819
Eco47I GGWCC 3 cut(s) 352, 693, 1136
Eco52I CGGCCG 1 cut(s) 286
Eco57I CTGAAG 5 cut(s) 59, 145, 590, 698, 884
Eco72I CACGTG 1 cut(s) 349
EcoO109I RGGNCCY 2 cut(s) 693, 1136
EcoRII CCWGG 3 cut(s) 778, 833, 1155
EcoT38I GRGCYC 2 cut(s) 99, 819
FaeI CATG 2 cut(s) 1174, 1208
FaqI GGGAC 2 cut(s) 679, 1149
FatI CATG 2 cut(s) 1170, 1204
FauI CCCGC 3 cut(s) 69, 651, 826
FbaI TGATCA 3 cut(s) 66, 706, 1207
FokI GGATG 2 cut(s) 839, 1138
FriOI GRGCYC 2 cut(s) 99, 819
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 630
GsaI CCCAGC 1 cut(s) 102
GsuI CTGGAG 3 cut(s) 409, 450, 762
HaeIII GGCC 5 cut(s) 288, 389, 817, 833, 872
HapII CCGG 5 cut(s) 92, 289, 383, 488, 904
HgaI GACGC 1 cut(s) 908
HhaI GCGC 1 cut(s) 631
Hin1I GRCGYC 1 cut(s) 900
Hin1II CATG 2 cut(s) 1174, 1208
Hin6I GCGC 1 cut(s) 629
HinP1I GCGC 1 cut(s) 629
HindIII AAGCTT 1 cut(s) 1062
HinfI GANTC 5 cut(s) 147, 483, 731, 794, 1029
HpaII CCGG 5 cut(s) 92, 289, 383, 488, 904
HphI GGTGA 2 cut(s) 76, 794
Hpy188I TCNGA 7 cut(s) 146, 164, 232, 344, 678, 826, 1144
Hpy188III TCNNGA 6 cut(s) 70, 300, 399, 515, 685, 1205
Hpy99I CGWCG 3 cut(s) 146, 400, 622
HpyAV CCTTC 4 cut(s) 623, 988, 1184, 1190
HpyCH4III ACNGT 2 cut(s) 340, 530
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 7 cut(s) 4, 336, 552, 586, 851, 1048, 1068
HpyF3I CTNAG 3 cut(s) 984, 999, 1023
HpySE526I ACGT 1 cut(s) 348
Hsp92I GRCGYC 1 cut(s) 900
Hsp92II CATG 2 cut(s) 1174, 1208
HspAI GCGC 1 cut(s) 629
KflI GGGWCCC 2 cut(s) 693, 1136
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
Ksp22I TGATCA 3 cut(s) 66, 706, 1207
Kzo9I GATC 9 cut(s) 58, 66, 136, 517, 706, 939, 963, 1201, 1207
LmnI GCTCC 7 cut(s) 94, 212, 469, 615, 859, 1040, 1118
Lsp1109I GCAGC 9 cut(s) 21, 89, 383, 473, 574, 577, 580, 982, 1081
LweI GCATC 2 cut(s) 416, 830
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 7 cut(s) 278, 363, 428, 449, 524, 662, 1166
MalI GATC 9 cut(s) 60, 68, 138, 519, 708, 941, 965, 1203, 1209
MboI GATC 9 cut(s) 58, 66, 136, 517, 706, 939, 963, 1201, 1207
MboII GAAGA 6 cut(s) 68, 177, 630, 777, 780, 908
MhlI GDGCHC 6 cut(s) 92, 99, 209, 324, 819, 1123
MlsI TGGCCA 1 cut(s) 833
MluCI AATT 3 cut(s) 436, 649, 745
MluNI TGGCCA 1 cut(s) 833
MlyI GAGTC 1 cut(s) 477
MmeI TCCRAC 2 cut(s) 124, 367
Mox20I TGGCCA 1 cut(s) 833
MroNI GCCGGC 1 cut(s) 382
MscI TGGCCA 1 cut(s) 833
MslI CAYNNNNRTG 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 833
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 5 cut(s) 92, 289, 383, 488, 904
MspR9I CCNGG 7 cut(s) 92, 290, 488, 780, 835, 904, 1157
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 3 cut(s) 780, 835, 1157
MvnI CGCG 3 cut(s) 400, 629, 893
NaeI GCCGGC 1 cut(s) 384
NciI CCSGG 4 cut(s) 92, 290, 488, 904
NdeII GATC 9 cut(s) 58, 66, 136, 517, 706, 939, 963, 1201, 1207
NgoMIV GCCGGC 1 cut(s) 382
NheI GCTAGC 1 cut(s) 49
NlaIII CATG 2 cut(s) 1174, 1208
NlaIV GGNNCC 8 cut(s) 24, 96, 262, 694, 695, 817, 1137, 1138
NmeAIII GCCGAG 1 cut(s) 111
NmuCI GTSAC 3 cut(s) 278, 428, 524
NruI TCGCGA 1 cut(s) 400
NspI RCATGY 1 cut(s) 1174
PagI TCATGA 1 cut(s) 1204
PciI ACATGT 1 cut(s) 1170
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 138
PctI GAATGC 1 cut(s) 541
PdiI GCCGGC 1 cut(s) 384
PfeI GAWTC 4 cut(s) 147, 731, 794, 1029
PleI GAGTC 1 cut(s) 477
PmaCI CACGTG 1 cut(s) 349
PmlI CACGTG 1 cut(s) 349
PpsI GAGTC 1 cut(s) 477
Ppu21I YACGTR 1 cut(s) 349
PpuMI RGGWCCY 2 cut(s) 693, 1136
PscI ACATGT 1 cut(s) 1170
Psp5II RGGWCCY 2 cut(s) 693, 1136
Psp6I CCWGG 3 cut(s) 778, 833, 1155
PspCI CACGTG 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 3 cut(s) 778, 833, 1155
PspN4I GGNNCC 8 cut(s) 24, 96, 262, 694, 695, 817, 1137, 1138
PspOMI GGGCCC 1 cut(s) 815
PspPI GGNCC 5 cut(s) 352, 693, 815, 816, 1136
PspPPI RGGWCCY 2 cut(s) 693, 1136
PvuII CAGCTG 1 cut(s) 102
RruI TCGCGA 1 cut(s) 400
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
RseI CAYNNNNRTG 1 cut(s) 276
Sau3AI GATC 9 cut(s) 58, 66, 136, 517, 706, 939, 963, 1201, 1207
Sau96I GGNCC 5 cut(s) 352, 693, 815, 816, 1136
SchI GAGTC 1 cut(s) 477
ScrFI CCNGG 7 cut(s) 92, 290, 488, 780, 835, 904, 1157
SduI GDGCHC 6 cut(s) 92, 99, 209, 324, 819, 1123
SfaNI GCATC 2 cut(s) 416, 830
SinI GGWCC 3 cut(s) 352, 693, 1136
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 3 cut(s) 436, 649, 745
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 7 cut(s) 90, 288, 486, 778, 833, 902, 1155
TaaI ACNGT 2 cut(s) 340, 530
TaiI ACGT 1 cut(s) 351
TaqI TCGA 3 cut(s) 410, 686, 942
TasI AATT 3 cut(s) 436, 649, 745
TatI WGTACW 1 cut(s) 413
TauI GCSGC 5 cut(s) 261, 288, 389, 1106, 1109
TfiI GAWTC 4 cut(s) 147, 731, 794, 1029
TscAI CASTG 3 cut(s) 194, 433, 1128
TseFI GTSAC 3 cut(s) 278, 428, 524
TseI GCWGC 9 cut(s) 34, 102, 371, 461, 562, 565, 568, 970, 1094
Tsp45I GTSAC 3 cut(s) 278, 428, 524
TspDTI ATGAA 5 cut(s) 304, 548, 738, 744, 807
TspGWI ACGGA 1 cut(s) 606
TspRI CASTG 3 cut(s) 194, 433, 1128
VpaK11BI GGWCC 3 cut(s) 352, 693, 1136
XapI RAATTY 1 cut(s) 649
XceI RCATGY 1 cut(s) 1174
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.