Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006002

Physical Location & Seq

Genomic Coordinates Reverse (-)

18046939 .. 18050395

Gene Structure 3457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G239100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGTTACCCAATAACTCTTCTTCCTCAGTTCCTTCTTCTGAGCCCTTTTCTTGCTTAGAAAATGGCAATACCAATAAAAGGAAAAGAAGACCTGCAGGAACTCCAGATCCAGATGCGGAGGTGGTGTCTCTTTCACCGAAAACCTTACTGGAATCGGATCGTTACGTTTGTGAGATCTGCAACCAAGGATTTCAGAGAGACCAGAACCTGCAGATGCACAGGAGACGGCACAAGGTGCCTTGGAAGCTGTTGAAGCGAGAGACTCCGGTCGTAAAGAAGAGGGTGTTCGTGTGCCCAGAGCCAAGCTGCCTGCACCATGACCCCTGCCACGCCCTCGGTGATCTTGTTGGCATCAAGAAGCACTTCAGAAGAAAGCACAGCAATCACAAGCAATGGGTTTGCGACAAGTGCTCCAAAGGTTACGCAGTTCAATCCGATTACAAAGCCCATCTCAAAACTTGCGGCACCAGAGGCCATTCTTGCGACTGCGGCCGTGTTTTCTCAAGGGTTGAGAGTTTCATAGAACACCAAGATGCCTGCAATATGGATCGTGTGCGGTCAGAATCACAAGCACTGCAGCCGGCCGCATGCTTGTCAAGAACAGCTTCAAGTCCCAGCCCATCCTGCAGTGACAACAATTTCAGCAGGGCTCCTCCCAATTGGCCTCCTCCATCTAATTTGGTGCTACCACATCCGAACCCAACCGAGTACACCAAATTAATCTTAACTAGTAGTACTAGTCCTCCTGCTCATCCTGATCATCTTCAACCTACATTAGTATCCAACAAGGCACTCTACAATTTGGATCTTCAGCTGGCAACAACATCCAATAATATTCCCATCAACGAAGTCTCATCGGTTTCCTCTAAGAGAGAAGAAAACCATTCCACCCAGCTGCAGCTCTCAATTGGGTCATGTGATTTTGGTGGCGGTGAACTTCATCAGAATAAAAACGTTGAACACTCGAACTTTATGATCACAAATAGAAATTACTCTCCGAGGGACAAGGAGATGAGGGAAAGGGAAAGCAGCAGCACCACTACCAATCATCATGAGCATGATGACGATCAGAAACCAAAACCTTCAGCTGGGATATCCATATCGGCAGCATCGTCAAGGCTGAAAGAAGAAGCACGAGAGCAGTTAAGGCTTGCCATGGCAGAAAAGGCTTATGCTGAAGAGGCCAGGCGGCAAGCGGAGCATCAGATTGAACTGGCCGAGAAGGAGTTTGCAAATGCCAAGAGAATAAGGCAACAAGCACAAGCTGAATTAGACAAAGCTCAGGCTTTGAAGGAGCAAGCCATCAAGAAAGTGAACTCCACCATTCTCCAAATCACTTGCCATGCTTGCAAGCAACAATTCATTCAAGCTGATCATCCAACAACAAGATCAAGGGCAACCCCAACCCCTACGCACGAGGCAATCAATCATTCTCTGGTACTCAGTTACATGTCATCGGCTATAACATCAGAAGGTGATCCATTAGACAATAATAATATTCGACCTCATCATGCAAAACCTGATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

510

Amino Acids

57.07

Weight (kDa)

8.73

Isoelectric Point (pI)

67.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25250 AT1G25250 AT1G25250 AT1G68130 AT1G68130
fragaria_vesca	FvH4_5g17840
malus_domestica	MD06G1234600.v1.1 MD13G1015000.v1.1 MD14G1241600.v1.1 MD16G1012300.v1.1
prunus_persica	Prupe.1G338700_v2.0.a1 Prupe.5G239100_v2.0.a1
pyrus_communis	pycom06g20930 pycom13g01270 pycom14g20290 pycom16g01170
rosa_chinensis	RchiOBHm_Chr7g0177741
rosa_laevigata	RLG00000005509
rosa_multiflora	Rmu_sc0004786.1_g000006
rosa_roxburghii	Rroxscaffold_3G00275600
rosa_rugosa	Rorug06G0409000 Rorug06G0409100
rosa_samantha	Rh7AG008500 Rh7BG008500 Rh7CG008900 Rh7DG008600
rosa_wichuraiana	Rw7G000710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	100, 216
AccB1I	GGYRCC	2 cut(s)	235, 464
AciI	CCGC	8 cut(s)	116, 462, 489, 556, 585, 930, 1189, 1196
AclI	AACGTT	1 cut(s)	954
AclWI	GGATC	5 cut(s)	101, 165, 555, 813, 1472
AcoI	YGGCCR	3 cut(s)	490, 582, 1215
AcuI	CTGAAG	4 cut(s)	349, 794, 1068, 1197
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	3 cut(s)	710, 736, 1440
AfiI	CCNNNNNNNGG	2 cut(s)	78, 1088
AflIII	ACRYGT	1 cut(s)	1449
AgsI	TTSAA	8 cut(s)	253, 431, 609, 767, 959, 1211, 1291, 1367
AhlI	ACTAGT	2 cut(s)	728, 737
AjnI	CCWGG	1 cut(s)	1184
AloI	GAACNNNNNNTCC	2 cut(s)	91, 123
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	5 cut(s)	132, 192, 217, 254, 856
AlwI	GGATC	5 cut(s)	101, 165, 555, 813, 1472
AlwNI	CAGNNNCTG	1 cut(s)	208
AoxI	GGCC	6 cut(s)	472, 490, 582, 662, 1182, 1215
ApeKI	GCWGC	7 cut(s)	306, 577, 895, 898, 1029, 1032, 1106
AseI	ATTAAT	1 cut(s)	719
Asp700I	GAANNNNTTC	2 cut(s)	362, 604
AsuHPI	GGTGA	4 cut(s)	126, 350, 944, 1487
BaeGI	GKGCMC	1 cut(s)	296
BaeI	ACNNNNGTAYC	2 cut(s)	762, 795
BanI	GGYRCC	2 cut(s)	235, 464
BanII	GRGCYC	2 cut(s)	45, 652
BauI	CACGAG	2 cut(s)	1134, 1415
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	413
BbvI	GCAGC	7 cut(s)	293, 589, 882, 910, 1041, 1044, 1118
BccI	CCATC	5 cut(s)	456, 628, 679, 848, 1310
BceAI	ACGGC	2 cut(s)	242, 477
BciT130I	CCWGG	1 cut(s)	1186
BciVI	GTATCC	1 cut(s)	790
BclI	TGATCA	3 cut(s)	757, 975, 1372
BcoDI	GTCTC	5 cut(s)	132, 192, 217, 254, 856
BcuI	ACTAGT	2 cut(s)	728, 737
BfaI	CTAG	2 cut(s)	729, 738
BfmI	CTRYAG	5 cut(s)	93, 209, 575, 625, 896
BfuAI	ACCTGC	2 cut(s)	100, 216
BfuI	GTATCC	1 cut(s)	790
BglII	AGATCT	1 cut(s)	174
BmcAI	AGTACT	1 cut(s)	736
Bme1390I	CCNGG	1 cut(s)	1186
BmiI	GGNNCC	3 cut(s)	237, 466, 651
BmrFI	CCNGG	1 cut(s)	1186
BmsI	GCATC	6 cut(s)	103, 204, 360, 523, 1118, 1210
BoxI	GACNNNNGTC	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	1281
BpuEI	CTTGAG	1 cut(s)	487
BsaBI	GATNNNNATC	1 cut(s)	1065
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	5 cut(s)	184, 239, 334, 998, 1155
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	6 cut(s)	110, 140, 395, 425, 727, 757
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 1088
Bse118I	RCCGGY	1 cut(s)	580
Bse1I	ACTGG	2 cut(s)	153, 1218
Bse3DI	GCAATG	1 cut(s)	398
Bse8I	GATNNNNATC	1 cut(s)	1065
BseBI	CCWGG	1 cut(s)	1186
BseDI	CCNNGG	5 cut(s)	184, 239, 334, 998, 1155
BseGI	GGATG	5 cut(s)	620, 691, 751, 824, 1375
BseJI	GATNNNNATC	1 cut(s)	1065
BseLI	CCNNNNNNNGG	2 cut(s)	78, 1088
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	4 cut(s)	30, 39, 1295, 1456
BseNI	ACTGG	2 cut(s)	153, 1218
BseRI	GAGGAG	2 cut(s)	642, 657
BseSI	GKGCMC	1 cut(s)	296
BseX3I	CGGCCG	2 cut(s)	490, 582
BseXI	GCAGC	7 cut(s)	293, 589, 882, 910, 1041, 1044, 1118
BseYI	CCCAGC	3 cut(s)	614, 891, 1088
BsgI	GTGCAG	1 cut(s)	296
Bsh1285I	CGRYCG	3 cut(s)	270, 493, 585
BshFI	GGCC	6 cut(s)	474, 492, 584, 664, 1184, 1217
BshNI	GGYRCC	2 cut(s)	235, 464
BsiEI	CGRYCG	3 cut(s)	270, 493, 585
BsiHKAI	GWGCWC	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	266, 581
BslFI	GGGAC	2 cut(s)	597, 1016
BslI	CCNNNNNNNGG	2 cut(s)	78, 1088
BsmAI	GTCTC	5 cut(s)	132, 192, 217, 254, 856
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	2 cut(s)	597, 1016
BsnI	GGCC	6 cut(s)	474, 492, 584, 664, 1184, 1217
Bso31I	GGTCTC	1 cut(s)	192
Bsp1286I	GDGCHC	4 cut(s)	45, 296, 413, 652
Bsp19I	CCATGG	1 cut(s)	1155
BspACI	CCGC	8 cut(s)	116, 462, 489, 556, 585, 930, 1189, 1196
BspANI	GGCC	6 cut(s)	474, 492, 584, 664, 1184, 1217
BspCNI	CTCAG	4 cut(s)	31, 38, 1294, 1455
BspHI	TCATGA	1 cut(s)	1051
BspLI	GGNNCC	3 cut(s)	237, 466, 651
BspMAI	CTGCAG	5 cut(s)	97, 213, 579, 629, 900
BspMI	ACCTGC	2 cut(s)	100, 216
BspPI	GGATC	5 cut(s)	101, 165, 555, 813, 1472
BspT107I	GGYRCC	2 cut(s)	235, 464
BspTNI	GGTCTC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	580
BsrI	ACTGG	2 cut(s)	153, 1218
BssAI	RCCGGY	1 cut(s)	580
BssECI	CCNNGG	5 cut(s)	184, 239, 334, 998, 1155
BssSI	CACGAG	2 cut(s)	1134, 1415
BssT1I	CCWWGG	3 cut(s)	184, 239, 1155
Bst2BI	CACGAG	2 cut(s)	1134, 1415
Bst2UI	CCWGG	1 cut(s)	1186
Bst6I	CTCTTC	3 cut(s)	22, 272, 1173
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstDEI	CTNAG	6 cut(s)	25, 39, 55, 867, 1281, 1442
BstDSI	CCRYGG	1 cut(s)	1155
BstF5I	GGATG	5 cut(s)	620, 691, 751, 824, 1375
BstMAI	GTCTC	5 cut(s)	132, 192, 217, 254, 856
BstMCI	CGRYCG	3 cut(s)	270, 493, 585
BstNI	CCWGG	1 cut(s)	1186
BstNSI	RCATGY	2 cut(s)	591, 1453
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	1184
BstSFI	CTRYAG	5 cut(s)	93, 209, 575, 625, 896
BstSLI	GKGCMC	1 cut(s)	296
BstV1I	GCAGC	7 cut(s)	293, 589, 882, 910, 1041, 1044, 1118
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	3 cut(s)	106, 174, 805
BstYI	RGATCY	3 cut(s)	106, 174, 805
BstZI	CGGCCG	2 cut(s)	490, 582
BsuI	GTATCC	1 cut(s)	790
BsuRI	GGCC	6 cut(s)	474, 492, 584, 664, 1184, 1217
BtgI	CCRYGG	1 cut(s)	1155
BtsCI	GGATG	5 cut(s)	620, 691, 751, 824, 1375
BtsI	GCAGTG	2 cut(s)	572, 634
BtsIMutI	CAGTG	2 cut(s)	572, 634
BveI	ACCTGC	2 cut(s)	100, 216
CaiI	CAGNNNCTG	1 cut(s)	208
CciI	TCATGA	1 cut(s)	1051
Cfr10I	RCCGGY	1 cut(s)	580
Csp6I	GTAC	3 cut(s)	709, 735, 1439
CviAII	CATG	9 cut(s)	317, 588, 915, 1052, 1058, 1156, 1343, 1450, 1511
CviQI	GTAC	3 cut(s)	709, 735, 1439
DdeI	CTNAG	6 cut(s)	25, 39, 55, 867, 1281, 1442
DraIII	CACNNNGTG	1 cut(s)	235
EaeI	YGGCCR	3 cut(s)	490, 582, 1215
EagI	CGGCCG	2 cut(s)	490, 582
Eam1104I	CTCTTC	3 cut(s)	22, 272, 1173
EarI	CTCTTC	3 cut(s)	22, 272, 1173
EclXI	CGGCCG	2 cut(s)	490, 582
Eco130I	CCWWGG	3 cut(s)	184, 239, 1155
Eco24I	GRGCYC	2 cut(s)	45, 652
Eco31I	GGTCTC	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	1095
Eco52I	CGGCCG	2 cut(s)	490, 582
Eco57I	CTGAAG	4 cut(s)	349, 794, 1068, 1197
EcoRII	CCWGG	1 cut(s)	1184
EcoRV	GATATC	1 cut(s)	1095
EcoT14I	CCWWGG	3 cut(s)	184, 239, 1155
EcoT38I	GRGCYC	2 cut(s)	45, 652
ErhI	CCWWGG	3 cut(s)	184, 239, 1155
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	9 cut(s)	320, 591, 918, 1055, 1061, 1159, 1346, 1453, 1514
FalI	AAGNNNNNCTT	4 cut(s)	347, 379, 589, 621
FaqI	GGGAC	2 cut(s)	597, 1016
FatI	CATG	9 cut(s)	316, 587, 914, 1051, 1057, 1155, 1342, 1449, 1510
FbaI	TGATCA	3 cut(s)	757, 975, 1372
FokI	GGATG	5 cut(s)	607, 678, 738, 811, 1362
FriOI	GRGCYC	2 cut(s)	45, 652
FspBI	CTAG	2 cut(s)	729, 738
GsaI	CCCAGC	3 cut(s)	618, 895, 1092
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	6 cut(s)	474, 492, 584, 664, 1184, 1217
HapII	CCGG	2 cut(s)	266, 581
Hin1II	CATG	9 cut(s)	320, 591, 918, 1055, 1061, 1159, 1346, 1453, 1514
HinfI	GANTC	3 cut(s)	152, 262, 563
HpaII	CCGG	2 cut(s)	266, 581
HphI	GGTGA	4 cut(s)	126, 350, 944, 1487
Hpy166II	GTNNAC	3 cut(s)	711, 935, 1315
Hpy188III	TCNNGA	7 cut(s)	104, 110, 355, 597, 755, 1052, 1306
Hpy8I	GTNNAC	3 cut(s)	711, 935, 1315
HpyAV	CCTTC	5 cut(s)	42, 1092, 1216, 1285, 1466
HpyCH4IV	ACGT	2 cut(s)	165, 954
HpyF3I	CTNAG	6 cut(s)	25, 39, 55, 867, 1281, 1442
HpySE526I	ACGT	2 cut(s)	165, 954
Hsp92II	CATG	9 cut(s)	320, 591, 918, 1055, 1061, 1159, 1346, 1453, 1514
KroI	GCCGGC	1 cut(s)	580
KroNI	GCCGGC	1 cut(s)	582
Ksp22I	TGATCA	3 cut(s)	757, 975, 1372
LmnI	GCTCC	4 cut(s)	416, 655, 1198, 1294
Lsp1109I	GCAGC	7 cut(s)	293, 589, 882, 910, 1041, 1044, 1118
LweI	GCATC	6 cut(s)	103, 204, 360, 523, 1118, 1210
MaeI	CTAG	2 cut(s)	729, 738
MaeII	ACGT	2 cut(s)	165, 954
MaeIII	GTNAC	5 cut(s)	3, 161, 419, 629, 1445
MfeI	CAATTG	2 cut(s)	658, 906
MflI	RGATCY	3 cut(s)	106, 174, 805
MhlI	GDGCHC	4 cut(s)	45, 296, 413, 652
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	2 cut(s)	807, 1403
MroNI	GCCGGC	1 cut(s)	580
MroXI	GAANNNNTTC	2 cut(s)	362, 604
MseI	TTAA	4 cut(s)	719, 725, 1145, 1528
MslI	CAYNNNNRTG	2 cut(s)	531, 1056
MspA1I	CMGCKG	3 cut(s)	814, 895, 1088
MspI	CCGG	2 cut(s)	266, 581
MspR9I	CCNGG	1 cut(s)	1186
MunI	CAATTG	2 cut(s)	658, 906
MvaI	CCWGG	1 cut(s)	1186
NaeI	GCCGGC	1 cut(s)	582
NcoI	CCATGG	1 cut(s)	1155
NgoMIV	GCCGGC	1 cut(s)	580
NlaIII	CATG	9 cut(s)	320, 591, 918, 1055, 1061, 1159, 1346, 1453, 1514
NlaIV	GGNNCC	3 cut(s)	237, 466, 651
NmeAIII	GCCGAG	1 cut(s)	1243
NmuCI	GTSAC	1 cut(s)	629
NspI	RCATGY	2 cut(s)	591, 1453
PaeI	GCATGC	1 cut(s)	591
PagI	TCATGA	1 cut(s)	1051
PciI	ACATGT	1 cut(s)	1449
PcsI	WCGNNNNNNNCGW	1 cut(s)	1109
PdiI	GCCGGC	1 cut(s)	582
PdmI	GAANNNNTTC	2 cut(s)	362, 604
PfeI	GAWTC	2 cut(s)	152, 563
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PscI	ACATGT	1 cut(s)	1449
PshAI	GACNNNNGTC	1 cut(s)	266
PshBI	ATTAAT	1 cut(s)	719
Psp1406I	AACGTT	1 cut(s)	954
Psp6I	CCWGG	1 cut(s)	1184
PspFI	CCCAGC	3 cut(s)	614, 891, 1088
PspGI	CCWGG	1 cut(s)	1184
PspN4I	GGNNCC	3 cut(s)	237, 466, 651
PstI	CTGCAG	5 cut(s)	97, 213, 579, 629, 900
PstNI	CAGNNNCTG	1 cut(s)	208
PsuI	RGATCY	3 cut(s)	106, 174, 805
PvuII	CAGCTG	3 cut(s)	814, 895, 1088
RsaI	GTAC	3 cut(s)	710, 736, 1440
RsaNI	GTAC	3 cut(s)	709, 735, 1439
RseI	CAYNNNNRTG	2 cut(s)	531, 1056
SaqAI	TTAA	4 cut(s)	719, 725, 1145, 1528
SbfI	CCTGCAGG	1 cut(s)	97
ScaI	AGTACT	1 cut(s)	736
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	1186
SdaI	CCTGCAGG	1 cut(s)	97
SduI	GDGCHC	4 cut(s)	45, 296, 413, 652
SfaNI	GCATC	6 cut(s)	103, 204, 360, 523, 1118, 1210
SfcI	CTRYAG	5 cut(s)	93, 209, 575, 625, 896
SmiMI	CAYNNNNRTG	2 cut(s)	531, 1056
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
SpeI	ACTAGT	2 cut(s)	728, 737
SphI	GCATGC	1 cut(s)	591
Sse8387I	CCTGCAGG	1 cut(s)	97
SsiI	CCGC	8 cut(s)	116, 462, 489, 556, 585, 930, 1189, 1196
SspI	AATATT	2 cut(s)	835, 1498
SspMI	CTAG	2 cut(s)	729, 738
StyD4I	CCNGG	1 cut(s)	1184
StyI	CCWWGG	3 cut(s)	184, 239, 1155
TaiI	ACGT	2 cut(s)	168, 957
TaqI	TCGA	2 cut(s)	965, 1501
TatI	WGTACW	2 cut(s)	708, 734
TauI	GCSGC	4 cut(s)	465, 492, 587, 1192
TfiI	GAWTC	2 cut(s)	152, 563
Tru1I	TTAA	4 cut(s)	719, 725, 1145, 1528
Tru9I	TTAA	4 cut(s)	719, 725, 1145, 1528
TscAI	CASTG	2 cut(s)	579, 634
TseFI	GTSAC	1 cut(s)	629
TseI	GCWGC	7 cut(s)	306, 577, 895, 898, 1029, 1032, 1106
Tsp45I	GTSAC	1 cut(s)	629
TspDTI	ATGAA	3 cut(s)	508, 929, 1351
TspRI	CASTG	2 cut(s)	579, 634
VspI	ATTAAT	1 cut(s)	719
XceI	RCATGY	2 cut(s)	591, 1453
XmnI	GAANNNNTTC	2 cut(s)	362, 604
XspI	CTAG	2 cut(s)	729, 738
ZrmI	AGTACT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.