Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006002

Physical Location & Seq

Genomic Coordinates Reverse (-)

968453 .. 971471

Gene Structure 3019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1015000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGTTCGGTAACACCAACAACAACAACACCGCGGCCTCTTCTTCCGCTCCTCCGTCTTCTTCCTCCCATGAAAATGGCGGAGCCACCCACAAACGAAAAAGAAGACCTACAGGCACACCAGATCCGGATGCAGAAGTGGTGTCTCTGTCCCCCAAGACCCTACTCGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAGGGATTTCAGAGAGACCAGAATCTGCAGATGCACAGGAGGCGCCACAAGGTGCCGTGGAAGCTGCTGAAGCGAGAGATAGCGGAAGATCAGGTGATCAAGAAGCGGGTGTTCGTGTGCCCGGAGCCCAGCTGCCTCCACCACGACCCCTGCCACGCCCTCGGCGATCTCGTCGGAATCAAAAAACACTTTAGAAGAAAACATAGCAACCACAAGCAGTGGGTCTGCGGCAAATGCTCCAAAGGCTACGCCGTTCAGTCCGATTACAAAGCACATCTCAAAACCTGCGGCACCAGAGGACATTCCTGTGACTGTGGCCGGGTATTTTCAAGAGTGGAAAGTTTCATAGAGCACCAAGACACTTGCACAGTACGACACGTCGTCCGGCCGGAGTTACAGGCAGCGTTACAGCCGGCGGCCTGCTCGTCGCGAACCGCATCGAGTACCAGCCCCTCCAGTGACACCAATTTCAGCATTAGTAACAATGTGGCAGCTCCAGTAGTATTGGCTGGACTCCCGGTGCGACCAAACCCAACTCACCATCACGATCAGCGTGACGGTATGAATCCTTATAATTCTTGCAACCGCCAGCAGCAGCAGCAGCAACAACAACGAGTGCATAAAAATATATTGGAACTTCAGCTCCTTCCGTCGTCAAAAGCGCATACTTCTTCCCCGCCAAATTTAGACAAACGTCACGCAACTAATCTGAAGCTCTCGATTGGATCCCCGTCAAGTGATCAGCTTGACAACGAAAAGAATGAATCAGGCAAGTATAATTCATCACATATAATAAGAACAAGCAACTCTCCAGGTGATGAGAATGAATCGGCTCTTGGAGGAGTTGGGCCCGCATCGGATGTGGCCAGGTTGAAAGAGTTTGCGAGTGAGGAGCTGAAGTTGGCCGTGGCTGAAAAGTCTTACGCCGAAGACGCCCGGCGAGAAGCCAAACGGCAGATAGAGATGGCGGAGATCGAGTTCGCGAACGCCAAGAGGATCAGGCAGCAAGCGCAGGCTGAGGTGGAGAAGGCTCAGTTGCTCAAAGAGCAGGCAACTAAGAGAATCAGCTCCGCCATTTTGCAAATCACTTGTCAAGCTTGCAAGCAACGTTTTCACATTGCCTCTGCTGCTTCTGCCGCCGCAGGAGGAGGAGCACTGGGAGGAGTGGGACCCTCTGATGAGACATCCCTAGCTATGAGTTACATGTCCTCCGCCACAACCGAAGGAGAAGGAGATCATGATCACACCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009581 GO:0009582 GO:0009590 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009959 GO:0009965 GO:0010016 GO:0010031 GO:0010468 GO:0010556 GO:0010600 GO:0010601 GO:0010675 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032879 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044212 GO:0044424 GO:0044464 GO:0046885 GO:0046886 GO:0046982 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050879 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051606 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0090354 GO:0090355 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000112 GO:2000904 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

484

Amino Acids

52.95

Weight (kDa)

8.94

Isoelectric Point (pI)

69.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-2nd_BIRD-IDD	PF22996	100 - 134	4.7e-18	BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD	PF22995	139 - 163	2.6e-13	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25250 AT1G25250 AT1G25250 AT1G68130 AT1G68130
fragaria_vesca	FvH4_5g17840
malus_domestica	MD06G1234600.v1.1 MD13G1015000.v1.1 MD14G1241600.v1.1 MD16G1012300.v1.1
prunus_persica	Prupe.1G338700_v2.0.a1 Prupe.5G239100_v2.0.a1
pyrus_communis	pycom06g20930 pycom13g01270 pycom14g20290 pycom16g01170
rosa_chinensis	RchiOBHm_Chr7g0177741
rosa_laevigata	RLG00000005509
rosa_multiflora	Rmu_sc0004786.1_g000006
rosa_roxburghii	Rroxscaffold_3G00275600
rosa_rugosa	Rorug06G0409000 Rorug06G0409100
rosa_samantha	Rh7AG008500 Rh7BG008500 Rh7CG008900 Rh7DG008600
rosa_wichuraiana	Rw7G000710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
Acc36I	ACCTGC	1 cut(s)	491
AccB1I	GGYRCC	3 cut(s)	240, 250, 488
AccBSI	CCGCTC	1 cut(s)	47
AccII	CGCG	3 cut(s)	32, 628, 1181
AccIII	TCCGGA	1 cut(s)	124
AclI	AACGTT	1 cut(s)	1306
AclWI	GGATC	4 cut(s)	116, 918, 931, 1202
AcoI	YGGCCR	4 cut(s)	514, 584, 1062, 1101
AcsI	RAATTY	1 cut(s)	880
AcuI	CTGAAG	4 cut(s)	287, 821, 929, 1115
AcyI	GRCGYC	2 cut(s)	241, 1131
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	3 cut(s)	179, 570, 643
AflIII	ACRYGT	3 cut(s)	180, 574, 1401
AgeI	ACCGGT	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	528, 1072
AhdI	GACNNNNNGTC	1 cut(s)	578
AjiI	CACGTC	1 cut(s)	577
AjnI	CCWGG	3 cut(s)	198, 1009, 1064
AjuI	GAANNNNNNNTTGG	2 cut(s)	1017, 1049
AloI	GAACNNNNNNTCC	4 cut(s)	825, 857, 1160, 1192
Alw21I	GWGCWC	2 cut(s)	552, 1354
Alw26I	GTCTC	3 cut(s)	147, 207, 1373
AlwI	GGATC	4 cut(s)	116, 918, 931, 1202
AlwNI	CAGNNNCTG	1 cut(s)	223
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	7 cut(s)	33, 514, 584, 615, 1046, 1062, 1101
ApaI	GGGCCC	1 cut(s)	1050
ApoI	RAATTY	1 cut(s)	880
ArsI	GACNNNNNNTTYG	2 cut(s)	1273, 1305
AsiGI	ACCGGT	1 cut(s)	174
AspLEI	GCGC	3 cut(s)	243, 862, 1210
AspS9I	GGNCC	4 cut(s)	172, 1046, 1047, 1367
AsuC2I	CCSGG	4 cut(s)	320, 518, 716, 1135
AsuHPI	GGTGA	3 cut(s)	304, 728, 1025
AvaII	GGWCC	2 cut(s)	172, 1367
BaeGI	GKGCMC	2 cut(s)	320, 1050
BalI	TGGCCA	1 cut(s)	1064
BamHI	GGATCC	1 cut(s)	923
BanI	GGYRCC	3 cut(s)	240, 250, 488
BanII	GRGCYC	2 cut(s)	327, 1050
BbsI	GAAGAC	3 cut(s)	48, 109, 1134
Bbv12I	GWGCWC	2 cut(s)	552, 1354
BbvCI	CCTCAGC	1 cut(s)	1215
BccI	CCATC	2 cut(s)	747, 1156
BceAI	ACGGC	4 cut(s)	238, 434, 1088, 1166
BciT130I	CCWGG	3 cut(s)	200, 1011, 1066
BclI	TGATCA	3 cut(s)	294, 937, 1438
BcnI	CCSGG	4 cut(s)	320, 518, 716, 1135
BcoDI	GTCTC	3 cut(s)	147, 207, 1373
BfaI	CTAG	1 cut(s)	1388
BfmI	CTRYAG	2 cut(s)	108, 224
BfoI	RGCGCY	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	491
BglII	AGATCT	1 cut(s)	189
Bme1390I	CCNGG	7 cut(s)	200, 320, 518, 716, 1011, 1066, 1135
Bme18I	GGWCC	2 cut(s)	172, 1367
BmeRI	GACNNNNNGTC	1 cut(s)	578
BmgBI	CACGTC	1 cut(s)	577
BmgT120I	GGNCC	4 cut(s)	172, 1046, 1047, 1367
BmiI	GGNNCC	9 cut(s)	82, 242, 252, 324, 490, 925, 1048, 1368, 1369
BmrFI	CCNGG	7 cut(s)	200, 320, 518, 716, 1011, 1066, 1135
BmrI	ACTGGG	1 cut(s)	1364
BmsI	GCATC	4 cut(s)	118, 219, 644, 1061
BmuI	ACTGGG	1 cut(s)	1364
BoxI	GACNNNNGTC	1 cut(s)	891
BpiI	GAAGAC	3 cut(s)	48, 109, 1134
BpmI	CTGGAG	3 cut(s)	637, 678, 993
Bpu10I	CCTNAGC	1 cut(s)	1215
BpuMI	CCSGG	4 cut(s)	320, 518, 716, 1135
BsaAI	YACGTR	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	1437
BsaHI	GRCGYC	2 cut(s)	241, 1131
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	5 cut(s)	30, 199, 254, 358, 1104
BsaWI	WCCGGW	2 cut(s)	124, 174
BsaXI	ACNNNNNCTCC	8 cut(s)	825, 855, 1082, 1112, 1160, 1190, 1391, 1421
Bse118I	RCCGGY	2 cut(s)	174, 610
Bse1I	ACTGG	3 cut(s)	654, 695, 1359
Bse3DI	GCAATG	1 cut(s)	1314
Bse8I	GATNNNNATC	1 cut(s)	1437
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	3 cut(s)	200, 1011, 1066
BseDI	CCNNGG	5 cut(s)	30, 199, 254, 358, 1104
BseGI	GGATG	3 cut(s)	133, 1063, 1382
BseJI	GATNNNNATC	1 cut(s)	1437
BseMI	GCAATG	1 cut(s)	1314
BseMII	CTCAG	2 cut(s)	1206, 1244
BseNI	ACTGG	3 cut(s)	654, 695, 1359
BseRI	GAGGAG	6 cut(s)	39, 1053, 1103, 1359, 1362, 1374
BseSI	GKGCMC	2 cut(s)	320, 1050
BseX3I	CGGCCG	1 cut(s)	584
BseYI	CCCAGC	1 cut(s)	326
Bsh1236I	CGCG	3 cut(s)	32, 628, 1181
Bsh1285I	CGRYCG	1 cut(s)	587
BshFI	GGCC	7 cut(s)	35, 516, 586, 617, 1048, 1064, 1103
BshNI	GGYRCC	3 cut(s)	240, 250, 488
BshTI	ACCGGT	1 cut(s)	174
BsiEI	CGRYCG	1 cut(s)	587
BsiHKAI	GWGCWC	2 cut(s)	552, 1354
BsiSI	CCGG	9 cut(s)	125, 175, 320, 517, 583, 587, 611, 716, 1135
BslFI	GGGAC	2 cut(s)	133, 1380
BsmAI	GTCTC	3 cut(s)	147, 207, 1373
BsmFI	GGGAC	2 cut(s)	133, 1380
BsnI	GGCC	7 cut(s)	35, 516, 586, 617, 1048, 1064, 1103
Bso31I	GGTCTC	1 cut(s)	207
Bsp120I	GGGCCC	1 cut(s)	1046
Bsp1286I	GDGCHC	5 cut(s)	320, 327, 552, 1050, 1354
Bsp13I	TCCGGA	1 cut(s)	124
Bsp68I	TCGCGA	2 cut(s)	628, 1181
BspANI	GGCC	7 cut(s)	35, 516, 586, 617, 1048, 1064, 1103
BspCNI	CTCAG	2 cut(s)	1207, 1243
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	3 cut(s)	32, 628, 1181
BspHI	TCATGA	1 cut(s)	1435
BspLI	GGNNCC	9 cut(s)	82, 242, 252, 324, 490, 925, 1048, 1368, 1369
BspMAI	CTGCAG	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	491
BspPI	GGATC	4 cut(s)	116, 918, 931, 1202
BspT107I	GGYRCC	3 cut(s)	240, 250, 488
BspTNI	GGTCTC	1 cut(s)	207
BsrBI	CCGCTC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	1314
BsrFI	RCCGGY	2 cut(s)	174, 610
BsrI	ACTGG	3 cut(s)	654, 695, 1359
BssAI	RCCGGY	2 cut(s)	174, 610
BssECI	CCNNGG	5 cut(s)	30, 199, 254, 358, 1104
BssNI	GRCGYC	2 cut(s)	241, 1131
Bst2UI	CCWGG	3 cut(s)	200, 1011, 1066
Bst4CI	ACNGT	3 cut(s)	512, 568, 758
Bst6I	CTCTTC	1 cut(s)	43
BstACI	GRCGYC	2 cut(s)	241, 1131
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	9 cut(s)	612, 619, 788, 1050, 1206, 1212, 1248, 1297, 1301
BstDEI	CTNAG	3 cut(s)	1215, 1230, 1254
BstDSI	CCRYGG	3 cut(s)	30, 254, 1104
BstF5I	GGATG	3 cut(s)	133, 1063, 1382
BstFNI	CGCG	3 cut(s)	32, 628, 1181
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	3 cut(s)	243, 862, 1210
BstMAI	GTCTC	3 cut(s)	147, 207, 1373
BstMCI	CGRYCG	1 cut(s)	587
BstNI	CCWGG	3 cut(s)	200, 1011, 1066
BstNSI	RCATGY	1 cut(s)	1405
BstPAI	GACNNNNGTC	1 cut(s)	891
BstSCI	CCNGG	7 cut(s)	198, 318, 516, 714, 1009, 1064, 1133
BstSFI	CTRYAG	2 cut(s)	108, 224
BstSLI	GKGCMC	2 cut(s)	320, 1050
BstUI	CGCG	3 cut(s)	32, 628, 1181
BstV2I	GAAGAC	3 cut(s)	48, 109, 1134
BstX2I	RGATCY	3 cut(s)	121, 189, 923
BstXI	CCANNNNNNTGG	1 cut(s)	74
BstYI	RGATCY	3 cut(s)	121, 189, 923
BstZI	CGGCCG	1 cut(s)	584
BsuRI	GGCC	7 cut(s)	35, 516, 586, 617, 1048, 1064, 1103
BtgI	CCRYGG	3 cut(s)	30, 254, 1104
BtrI	CACGTC	1 cut(s)	577
BtsCI	GGATG	3 cut(s)	133, 1063, 1382
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	3 cut(s)	422, 661, 1352
BtuMI	TCGCGA	2 cut(s)	628, 1181
BveI	ACCTGC	1 cut(s)	491
Cac8I	GCNNGC	9 cut(s)	612, 619, 788, 1050, 1206, 1212, 1248, 1297, 1301
CaiI	CAGNNNCTG	1 cut(s)	223
CciI	TCATGA	1 cut(s)	1435
CfoI	GCGC	3 cut(s)	243, 862, 1210
Cfr10I	RCCGGY	2 cut(s)	174, 610
Cfr13I	GGNCC	4 cut(s)	172, 1046, 1047, 1367
Cfr42I	CCGCGG	1 cut(s)	33
CpoI	CGGWCCG	1 cut(s)	172
CseI	GACGC	1 cut(s)	1139
Csp6I	GTAC	3 cut(s)	178, 569, 642
CspAI	ACCGGT	1 cut(s)	174
CspI	CGGWCCG	1 cut(s)	172
CviAII	CATG	3 cut(s)	68, 1402, 1436
CviQI	GTAC	3 cut(s)	178, 569, 642
DdeI	CTNAG	3 cut(s)	1215, 1230, 1254
DinI	GGCGCC	1 cut(s)	242
DraIII	CACNNNGTG	1 cut(s)	250
DriI	GACNNNNNGTC	1 cut(s)	578
EaeI	YGGCCR	4 cut(s)	514, 584, 1062, 1101
EagI	CGGCCG	1 cut(s)	584
Eam1104I	CTCTTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	43
EciI	GGCGGA	4 cut(s)	93, 1181, 1258, 1399
EclXI	CGGCCG	1 cut(s)	584
Eco24I	GRGCYC	2 cut(s)	327, 1050
Eco31I	GGTCTC	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	172, 1367
Eco52I	CGGCCG	1 cut(s)	584
Eco57I	CTGAAG	4 cut(s)	287, 821, 929, 1115
EcoO109I	RGGNCCY	1 cut(s)	1367
EcoRII	CCWGG	3 cut(s)	198, 1009, 1064
EcoT38I	GRGCYC	2 cut(s)	327, 1050
EgeI	GGCGCC	1 cut(s)	242
EheI	GGCGCC	1 cut(s)	242
FaeI	CATG	3 cut(s)	71, 1405, 1439
FaqI	GGGAC	2 cut(s)	133, 1380
FatI	CATG	3 cut(s)	67, 1401, 1435
FauI	CCCGC	3 cut(s)	297, 882, 1057
FbaI	TGATCA	3 cut(s)	294, 937, 1438
FokI	GGATG	3 cut(s)	140, 1070, 1369
FriOI	GRGCYC	2 cut(s)	327, 1050
FspBI	CTAG	1 cut(s)	1388
GlaI	GCGC	3 cut(s)	242, 861, 1209
GsaI	CCCAGC	1 cut(s)	330
GsuI	CTGGAG	3 cut(s)	637, 678, 993
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	7 cut(s)	35, 516, 586, 617, 1048, 1064, 1103
HapII	CCGG	9 cut(s)	125, 175, 320, 517, 583, 587, 611, 716, 1135
HgaI	GACGC	1 cut(s)	1139
HhaI	GCGC	3 cut(s)	243, 862, 1210
Hin1I	GRCGYC	2 cut(s)	241, 1131
Hin1II	CATG	3 cut(s)	71, 1405, 1439
Hin6I	GCGC	3 cut(s)	241, 860, 1208
HinP1I	GCGC	3 cut(s)	241, 860, 1208
HindIII	AAGCTT	1 cut(s)	1293
HinfI	GANTC	8 cut(s)	167, 220, 375, 711, 763, 962, 1025, 1260
HpaII	CCGG	9 cut(s)	125, 175, 320, 517, 583, 587, 611, 716, 1135
HphI	GGTGA	3 cut(s)	304, 728, 1025
Hpy188I	TCNGA	7 cut(s)	172, 210, 374, 460, 909, 1057, 1375
Hpy188III	TCNNGA	8 cut(s)	125, 298, 528, 627, 743, 916, 1180, 1436
Hpy99I	CGWCG	4 cut(s)	374, 581, 628, 853
HpyAV	CCTTC	4 cut(s)	854, 1219, 1415, 1421
HpyCH4III	ACNGT	3 cut(s)	512, 568, 758
HpyCH4IV	ACGT	4 cut(s)	180, 576, 892, 1306
HpyCH4V	TGCA	9 cut(s)	131, 195, 226, 232, 564, 780, 817, 1279, 1299
HpyF3I	CTNAG	3 cut(s)	1215, 1230, 1254
HpySE526I	ACGT	4 cut(s)	180, 576, 892, 1306
Hsp92I	GRCGYC	2 cut(s)	241, 1131
Hsp92II	CATG	3 cut(s)	71, 1405, 1439
HspAI	GCGC	3 cut(s)	241, 860, 1208
KasI	GGCGCC	1 cut(s)	240
KflI	GGGWCCC	1 cut(s)	1367
Kpn2I	TCCGGA	1 cut(s)	124
KroI	GCCGGC	1 cut(s)	610
KroNI	GCCGGC	1 cut(s)	612
Ksp22I	TGATCA	3 cut(s)	294, 937, 1438
KspI	CCGCGG	1 cut(s)	33
LmnI	GCTCC	9 cut(s)	52, 80, 322, 440, 697, 846, 1090, 1271, 1349
LweI	GCATC	4 cut(s)	118, 219, 644, 1061
MaeI	CTAG	1 cut(s)	1388
MaeII	ACGT	4 cut(s)	180, 576, 892, 1306
MaeIII	GTNAC	9 cut(s)	8, 506, 591, 603, 656, 677, 752, 893, 1397
MbiI	CCGCTC	1 cut(s)	47
MboII	GAAGA	9 cut(s)	30, 33, 48, 51, 114, 296, 405, 861, 1139
MflI	RGATCY	3 cut(s)	121, 189, 923
MhlI	GDGCHC	5 cut(s)	320, 327, 552, 1050, 1354
MlsI	TGGCCA	1 cut(s)	1064
MluCI	AATT	4 cut(s)	664, 772, 880, 976
MluNI	TGGCCA	1 cut(s)	1064
Mly113I	GGCGCC	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	705
MmeI	TCCRAC	1 cut(s)	352
Mox20I	TGGCCA	1 cut(s)	1064
MroI	TCCGGA	1 cut(s)	124
MroNI	GCCGGC	1 cut(s)	610
MscI	TGGCCA	1 cut(s)	1064
MslI	CAYNNNNRTG	2 cut(s)	72, 504
Msp20I	TGGCCA	1 cut(s)	1064
MspA1I	CMGCKG	2 cut(s)	32, 330
MspI	CCGG	9 cut(s)	125, 175, 320, 517, 583, 587, 611, 716, 1135
MspR9I	CCNGG	7 cut(s)	200, 320, 518, 716, 1011, 1066, 1135
MvaI	CCWGG	3 cut(s)	200, 1011, 1066
MvnI	CGCG	3 cut(s)	32, 628, 1181
NaeI	GCCGGC	1 cut(s)	612
NarI	GGCGCC	1 cut(s)	241
NciI	CCSGG	4 cut(s)	320, 518, 716, 1135
NgoMIV	GCCGGC	1 cut(s)	610
NlaIII	CATG	3 cut(s)	71, 1405, 1439
NlaIV	GGNNCC	9 cut(s)	82, 242, 252, 324, 490, 925, 1048, 1368, 1369
NmeAIII	GCCGAG	1 cut(s)	339
NmuCI	GTSAC	4 cut(s)	506, 656, 752, 893
NruI	TCGCGA	2 cut(s)	628, 1181
NspI	RCATGY	1 cut(s)	1405
PagI	TCATGA	1 cut(s)	1435
PciI	ACATGT	1 cut(s)	1401
PcsI	WCGNNNNNNNCGW	2 cut(s)	360, 366
PdiI	GCCGGC	1 cut(s)	612
PfeI	GAWTC	7 cut(s)	167, 220, 375, 763, 962, 1025, 1260
PinAI	ACCGGT	1 cut(s)	174
PleI	GAGTC	1 cut(s)	705
PluTI	GGCGCC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	705
Ppu21I	YACGTR	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	1367
PscI	ACATGT	1 cut(s)	1401
PshAI	GACNNNNGTC	1 cut(s)	891
PsiI	TTATAA	1 cut(s)	771
Psp1406I	AACGTT	1 cut(s)	1306
Psp5II	RGGWCCY	1 cut(s)	1367
Psp6I	CCWGG	3 cut(s)	198, 1009, 1064
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	3 cut(s)	198, 1009, 1064
PspN4I	GGNNCC	9 cut(s)	82, 242, 252, 324, 490, 925, 1048, 1368, 1369
PspOMI	GGGCCC	1 cut(s)	1046
PspPI	GGNCC	4 cut(s)	172, 1046, 1047, 1367
PspPPI	RGGWCCY	1 cut(s)	1367
PstI	CTGCAG	1 cut(s)	228
PstNI	CAGNNNCTG	1 cut(s)	223
PsuI	RGATCY	3 cut(s)	121, 189, 923
PvuII	CAGCTG	1 cut(s)	330
RruI	TCGCGA	2 cut(s)	628, 1181
RsaI	GTAC	3 cut(s)	179, 570, 643
RsaNI	GTAC	3 cut(s)	178, 569, 642
RseI	CAYNNNNRTG	2 cut(s)	72, 504
Rsr2I	CGGWCCG	1 cut(s)	172
RsrII	CGGWCCG	1 cut(s)	172
SacII	CCGCGG	1 cut(s)	33
Sau96I	GGNCC	4 cut(s)	172, 1046, 1047, 1367
SchI	GAGTC	1 cut(s)	705
ScrFI	CCNGG	7 cut(s)	200, 320, 518, 716, 1011, 1066, 1135
SduI	GDGCHC	5 cut(s)	320, 327, 552, 1050, 1354
SfaNI	GCATC	4 cut(s)	118, 219, 644, 1061
SfcI	CTRYAG	2 cut(s)	108, 224
SfoI	GGCGCC	1 cut(s)	242
Sfr303I	CCGCGG	1 cut(s)	33
SgrBI	CCGCGG	1 cut(s)	33
SinI	GGWCC	2 cut(s)	172, 1367
SmiMI	CAYNNNNRTG	2 cut(s)	72, 504
Sse9I	AATT	4 cut(s)	664, 772, 880, 976
SspDI	GGCGCC	1 cut(s)	240
SspMI	CTAG	1 cut(s)	1388
StyD4I	CCNGG	7 cut(s)	198, 318, 516, 714, 1009, 1064, 1133
TaaI	ACNGT	3 cut(s)	512, 568, 758
TaiI	ACGT	4 cut(s)	183, 579, 895, 1309
TaqI	TCGA	4 cut(s)	165, 638, 917, 1173
TasI	AATT	4 cut(s)	664, 772, 880, 976
TauI	GCSGC	6 cut(s)	35, 429, 489, 617, 1337, 1340
TfiI	GAWTC	7 cut(s)	167, 220, 375, 763, 962, 1025, 1260
TscAI	CASTG	3 cut(s)	422, 661, 1359
TseFI	GTSAC	4 cut(s)	506, 656, 752, 893
Tsp45I	GTSAC	4 cut(s)	506, 656, 752, 893
TspDTI	ATGAA	6 cut(s)	84, 532, 776, 969, 975, 1038
TspGWI	ACGGA	2 cut(s)	42, 837
TspRI	CASTG	3 cut(s)	422, 661, 1359
VpaK11BI	GGWCC	2 cut(s)	172, 1367
XapI	RAATTY	1 cut(s)	880
XceI	RCATGY	1 cut(s)	1405
XspI	CTAG	1 cut(s)	1388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.