contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83 identical, and each Arabidopsis homolog shows approximately 70 similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G27650 AT1G27650 |
| fragaria_vesca | FvH4_3g29970 FvH4_3g29970 FvH4_3g29970 FvH4_3g29970 |
| malus_domestica | MD03G1134200.v1.1 MD11G1156400.v1.1 |
| prunus_persica | Prupe.6G118600_v2.0.a1 Prupe.6G118600_v2.0.a1 |
| pyrus_communis | pycom03g09020 pycom11g12700 |
| rosa_chinensis | RchiOBHm_Chr5g0055381 RchiOBHm_Chr5g0055431 |
| rosa_laevigata | RLG00000034985 |
| rosa_multiflora | Rmu_sc0001673.1_g000027 Rmu_sc0014407.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00024920 Rroxscaffold_1G00024960 |
| rosa_samantha | Rh5AG362400 Rh5BG374600 Rh5CG396200 Rh5CG396400 Rh5DG387700 |
| rosa_wichuraiana | Rw5G034090 Rw5G034120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 412 |
| AccII | CGCG | 4 cut(s) | 103, 214, 450, 690 |
| AciI | CCGC | 5 cut(s) | 5, 212, 448, 577, 807 |
| AclWI | GGATC | 3 cut(s) | 258, 366, 644 |
| AcsI | RAATTY | 1 cut(s) | 665 |
| AcvI | CACGTG | 1 cut(s) | 459 |
| AcyI | GRCGYC | 1 cut(s) | 409 |
| AfaI | GTAC | 3 cut(s) | 31, 155, 500 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 462, 788, 806 |
| AflIII | ACRYGT | 2 cut(s) | 150, 458 |
| AgeI | ACCGGT | 1 cut(s) | 93 |
| AgsI | TTSAA | 4 cut(s) | 21, 67, 147, 759 |
| AjiI | CACGTC | 1 cut(s) | 647 |
| AjnI | CCWGG | 2 cut(s) | 178, 620 |
| AluBI | AGCT | 3 cut(s) | 265, 371, 523 |
| AluI | AGCT | 3 cut(s) | 265, 371, 523 |
| Alw21I | GWGCWC | 2 cut(s) | 101, 231 |
| Alw26I | GTCTC | 1 cut(s) | 763 |
| AlwI | GGATC | 3 cut(s) | 258, 366, 644 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 385 |
| Ama87I | CYCGRG | 1 cut(s) | 799 |
| AoxI | GGCC | 2 cut(s) | 161, 196 |
| ApeKI | GCWGC | 3 cut(s) | 365, 368, 371 |
| ApoI | RAATTY | 1 cut(s) | 665 |
| AsiGI | ACCGGT | 1 cut(s) | 93 |
| AspLEI | GCGC | 1 cut(s) | 77 |
| AspS9I | GGNCC | 1 cut(s) | 196 |
| AsuC2I | CCSGG | 2 cut(s) | 800, 801 |
| AsuHPI | GGTGA | 1 cut(s) | 101 |
| AvaI | CYCGRG | 1 cut(s) | 799 |
| BanII | GRGCYC | 1 cut(s) | 800 |
| BbrPI | CACGTG | 1 cut(s) | 459 |
| BbsI | GAAGAC | 1 cut(s) | 98 |
| Bbv12I | GWGCWC | 2 cut(s) | 101, 231 |
| BbvI | GCAGC | 3 cut(s) | 352, 358, 380 |
| BccI | CCATC | 2 cut(s) | 131, 422 |
| BceAI | ACGGC | 1 cut(s) | 66 |
| BciT130I | CCWGG | 2 cut(s) | 180, 622 |
| BcnI | CCSGG | 2 cut(s) | 800, 801 |
| BcoDI | GTCTC | 1 cut(s) | 763 |
| BfmI | CTRYAG | 1 cut(s) | 366 |
| BfoI | RGCGCY | 1 cut(s) | 78 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 804 |
| BisI | GCNGC | 3 cut(s) | 366, 369, 372 |
| BlsI | GCNGC | 3 cut(s) | 367, 370, 373 |
| Bme1390I | CCNGG | 4 cut(s) | 180, 622, 800, 801 |
| BmeT110I | CYCGRG | 1 cut(s) | 799 |
| BmgBI | CACGTC | 1 cut(s) | 647 |
| BmgT120I | GGNCC | 1 cut(s) | 196 |
| BmiI | GGNNCC | 1 cut(s) | 797 |
| BmrFI | CCNGG | 4 cut(s) | 180, 622, 800, 801 |
| BpiI | GAAGAC | 1 cut(s) | 98 |
| Bpu10I | CCTNAGC | 1 cut(s) | 192 |
| BpuMI | CCSGG | 2 cut(s) | 800, 801 |
| BsaAI | YACGTR | 1 cut(s) | 459 |
| BsaHI | GRCGYC | 1 cut(s) | 409 |
| BsaJI | CCNNGG | 4 cut(s) | 178, 490, 620, 799 |
| BsaWI | WCCGGW | 1 cut(s) | 93 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 787, 817 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 462, 788, 806 |
| Bse118I | RCCGGY | 1 cut(s) | 93 |
| Bse3DI | GCAATG | 2 cut(s) | 417, 854 |
| BseBI | CCWGG | 2 cut(s) | 180, 622 |
| BseDI | CCNNGG | 4 cut(s) | 178, 490, 620, 799 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 462, 788, 806 |
| BseMI | GCAATG | 2 cut(s) | 417, 854 |
| BseMII | CTCAG | 2 cut(s) | 24, 206 |
| BseRI | GAGGAG | 5 cut(s) | 275, 804, 839, 844, 881 |
| BseXI | GCAGC | 3 cut(s) | 352, 358, 380 |
| Bsh1236I | CGCG | 4 cut(s) | 103, 214, 450, 690 |
| BshFI | GGCC | 2 cut(s) | 163, 198 |
| BshTI | ACCGGT | 1 cut(s) | 93 |
| BsiHKAI | GWGCWC | 2 cut(s) | 101, 231 |
| BsiHKCI | CYCGRG | 1 cut(s) | 799 |
| BsiSI | CCGG | 2 cut(s) | 94, 800 |
| BslFI | GGGAC | 3 cut(s) | 396, 692, 764 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 462, 788, 806 |
| BsmAI | GTCTC | 1 cut(s) | 763 |
| BsmFI | GGGAC | 3 cut(s) | 396, 692, 764 |
| BsnI | GGCC | 2 cut(s) | 163, 198 |
| BsoBI | CYCGRG | 1 cut(s) | 799 |
| Bsp1286I | GDGCHC | 3 cut(s) | 101, 231, 800 |
| Bsp143I | GATC | 5 cut(s) | 250, 358, 569, 649, 685 |
| Bsp68I | TCGCGA | 1 cut(s) | 690 |
| BspACI | CCGC | 5 cut(s) | 5, 212, 448, 577, 807 |
| BspANI | GGCC | 2 cut(s) | 163, 198 |
| BspCNI | CTCAG | 2 cut(s) | 25, 205 |
| BspFNI | CGCG | 4 cut(s) | 103, 214, 450, 690 |
| BspLI | GGNNCC | 1 cut(s) | 797 |
| BspMAI | CTGCAG | 1 cut(s) | 370 |
| BspPI | GGATC | 3 cut(s) | 258, 366, 644 |
| BsrDI | GCAATG | 2 cut(s) | 417, 854 |
| BsrFI | RCCGGY | 1 cut(s) | 93 |
| BssAI | RCCGGY | 1 cut(s) | 93 |
| BssECI | CCNNGG | 4 cut(s) | 178, 490, 620, 799 |
| BssMI | GATC | 5 cut(s) | 250, 358, 569, 649, 685 |
| BssNI | GRCGYC | 1 cut(s) | 409 |
| Bst2UI | CCWGG | 2 cut(s) | 180, 622 |
| Bst4CI | ACNGT | 5 cut(s) | 116, 491, 503, 701, 755 |
| Bst6I | CTCTTC | 2 cut(s) | 348, 870 |
| BstACI | GRCGYC | 1 cut(s) | 409 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 385 |
| BstBAI | YACGTR | 1 cut(s) | 459 |
| BstC8I | GCNNGC | 4 cut(s) | 79, 101, 381, 778 |
| BstDEI | CTNAG | 3 cut(s) | 33, 192, 539 |
| BstDSI | CCRYGG | 1 cut(s) | 490 |
| BstEII | GGTNACC | 1 cut(s) | 89 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 786 |
| BstFNI | CGCG | 4 cut(s) | 103, 214, 450, 690 |
| BstH2I | RGCGCY | 1 cut(s) | 78 |
| BstHHI | GCGC | 1 cut(s) | 77 |
| BstKTI | GATC | 5 cut(s) | 253, 361, 572, 652, 688 |
| BstMAI | GTCTC | 1 cut(s) | 763 |
| BstMBI | GATC | 5 cut(s) | 250, 358, 569, 649, 685 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 371, 380, 385, 520, 804 |
| BstNI | CCWGG | 2 cut(s) | 180, 622 |
| BstNSI | RCATGY | 2 cut(s) | 154, 518 |
| BstPI | GGTNACC | 1 cut(s) | 89 |
| BstSCI | CCNGG | 4 cut(s) | 178, 620, 798, 799 |
| BstSFI | CTRYAG | 1 cut(s) | 366 |
| BstUI | CGCG | 4 cut(s) | 103, 214, 450, 690 |
| BstV1I | GCAGC | 3 cut(s) | 352, 358, 380 |
| BstV2I | GAAGAC | 1 cut(s) | 98 |
| BstX2I | RGATCY | 1 cut(s) | 250 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 326 |
| BstYI | RGATCY | 1 cut(s) | 250 |
| BsuRI | GGCC | 2 cut(s) | 163, 198 |
| BtgI | CCRYGG | 1 cut(s) | 490 |
| BtrI | CACGTC | 1 cut(s) | 647 |
| BtsI | GCAGTG | 1 cut(s) | 730 |
| BtsIMutI | CAGTG | 1 cut(s) | 730 |
| BtuMI | TCGCGA | 1 cut(s) | 690 |
| Cac8I | GCNNGC | 4 cut(s) | 79, 101, 381, 778 |
| CaiI | CAGNNNCTG | 1 cut(s) | 385 |
| CfoI | GCGC | 1 cut(s) | 77 |
| Cfr10I | RCCGGY | 1 cut(s) | 93 |
| Cfr13I | GGNCC | 1 cut(s) | 196 |
| Cfr9I | CCCGGG | 1 cut(s) | 799 |
| CseI | GACGC | 2 cut(s) | 92, 197 |
| Csp6I | GTAC | 3 cut(s) | 30, 154, 499 |
| CspAI | ACCGGT | 1 cut(s) | 93 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 475, 510 |
| CviAII | CATG | 7 cut(s) | 86, 151, 169, 322, 511, 515, 704 |
| CviQI | GTAC | 3 cut(s) | 30, 154, 499 |
| DdeI | CTNAG | 3 cut(s) | 33, 192, 539 |
| DpnI | GATC | 5 cut(s) | 252, 360, 571, 651, 687 |
| DpnII | GATC | 5 cut(s) | 250, 358, 569, 649, 685 |
| Eam1104I | CTCTTC | 2 cut(s) | 348, 870 |
| EarI | CTCTTC | 2 cut(s) | 348, 870 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Eco147I | AGGCCT | 1 cut(s) | 163 |
| Eco24I | GRGCYC | 1 cut(s) | 800 |
| Eco32I | GATATC | 1 cut(s) | 563 |
| Eco72I | CACGTG | 1 cut(s) | 459 |
| Eco88I | CYCGRG | 1 cut(s) | 799 |
| Eco91I | GGTNACC | 1 cut(s) | 89 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 786 |
| EcoO65I | GGTNACC | 1 cut(s) | 89 |
| EcoRI | GAATTC | 1 cut(s) | 665 |
| EcoRII | CCWGG | 2 cut(s) | 178, 620 |
| EcoRV | GATATC | 1 cut(s) | 563 |
| EcoT22I | ATGCAT | 1 cut(s) | 516 |
| EcoT38I | GRGCYC | 1 cut(s) | 800 |
| FaeI | CATG | 7 cut(s) | 89, 154, 172, 325, 514, 518, 707 |
| FaqI | GGGAC | 3 cut(s) | 396, 692, 764 |
| FatI | CATG | 7 cut(s) | 85, 150, 168, 321, 510, 514, 703 |
| FauI | CCCGC | 2 cut(s) | 219, 800 |
| Fnu4HI | GCNGC | 3 cut(s) | 366, 369, 372 |
| FriOI | GRGCYC | 1 cut(s) | 800 |
| Fsp4HI | GCNGC | 3 cut(s) | 366, 369, 372 |
| GlaI | GCGC | 1 cut(s) | 76 |
| GluI | GCNGC | 3 cut(s) | 366, 369, 372 |
| HaeII | RGCGCY | 1 cut(s) | 78 |
| HaeIII | GGCC | 2 cut(s) | 163, 198 |
| HapII | CCGG | 2 cut(s) | 94, 800 |
| HgaI | GACGC | 2 cut(s) | 92, 197 |
| HhaI | GCGC | 1 cut(s) | 77 |
| Hin1I | GRCGYC | 1 cut(s) | 409 |
| Hin1II | CATG | 7 cut(s) | 89, 154, 172, 325, 514, 518, 707 |
| Hin6I | GCGC | 1 cut(s) | 75 |
| HinP1I | GCGC | 1 cut(s) | 75 |
| HincII | GTYRAC | 1 cut(s) | 187 |
| HindII | GTYRAC | 1 cut(s) | 187 |
| HindIII | AAGCTT | 1 cut(s) | 521 |
| HinfI | GANTC | 1 cut(s) | 220 |
| HpaII | CCGG | 2 cut(s) | 94, 800 |
| HphI | GGTGA | 1 cut(s) | 101 |
| Hpy166II | GTNNAC | 1 cut(s) | 187 |
| Hpy188I | TCNGA | 1 cut(s) | 736 |
| Hpy188III | TCNNGA | 5 cut(s) | 67, 224, 405, 677, 689 |
| Hpy8I | GTNNAC | 1 cut(s) | 187 |
| Hpy99I | CGWCG | 1 cut(s) | 648 |
| HpyAV | CCTTC | 4 cut(s) | 149, 663, 809, 865 |
| HpyCH4III | ACNGT | 5 cut(s) | 116, 491, 503, 701, 755 |
| HpyCH4IV | ACGT | 4 cut(s) | 333, 409, 458, 646 |
| HpyCH4V | TGCA | 5 cut(s) | 368, 379, 388, 486, 514 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 371, 380, 385, 520, 804 |
| HpyF3I | CTNAG | 3 cut(s) | 33, 192, 539 |
| HpySE526I | ACGT | 4 cut(s) | 333, 409, 458, 646 |
| Hsp92I | GRCGYC | 1 cut(s) | 409 |
| Hsp92II | CATG | 7 cut(s) | 89, 154, 172, 325, 514, 518, 707 |
| HspAI | GCGC | 1 cut(s) | 75 |
| Kzo9I | GATC | 5 cut(s) | 250, 358, 569, 649, 685 |
| LmnI | GCTCC | 7 cut(s) | 7, 226, 262, 597, 720, 795, 884 |
| Lsp1109I | GCAGC | 3 cut(s) | 352, 358, 380 |
| MaeII | ACGT | 4 cut(s) | 333, 409, 458, 646 |
| MaeIII | GTNAC | 3 cut(s) | 89, 302, 436 |
| MalI | GATC | 5 cut(s) | 252, 360, 571, 651, 687 |
| MboI | GATC | 5 cut(s) | 250, 358, 569, 649, 685 |
| MboII | GAAGA | 4 cut(s) | 98, 365, 485, 887 |
| MflI | RGATCY | 1 cut(s) | 250 |
| MhlI | GDGCHC | 3 cut(s) | 101, 231, 800 |
| MluCI | AATT | 3 cut(s) | 49, 505, 665 |
| MmeI | TCCRAC | 1 cut(s) | 714 |
| Mph1103I | ATGCAT | 1 cut(s) | 516 |
| MseI | TTAA | 1 cut(s) | 348 |
| MslI | CAYNNNNRTG | 2 cut(s) | 515, 708 |
| MspA1I | CMGCKG | 1 cut(s) | 371 |
| MspI | CCGG | 2 cut(s) | 94, 800 |
| MspR9I | CCNGG | 4 cut(s) | 180, 622, 800, 801 |
| MvaI | CCWGG | 2 cut(s) | 180, 622 |
| MvnI | CGCG | 4 cut(s) | 103, 214, 450, 690 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 371, 380, 385, 520, 804 |
| NciI | CCSGG | 2 cut(s) | 800, 801 |
| NdeII | GATC | 5 cut(s) | 250, 358, 569, 649, 685 |
| NlaIII | CATG | 7 cut(s) | 89, 154, 172, 325, 514, 518, 707 |
| NlaIV | GGNNCC | 1 cut(s) | 797 |
| NmuCI | GTSAC | 3 cut(s) | 89, 302, 436 |
| NruI | TCGCGA | 1 cut(s) | 690 |
| NsiI | ATGCAT | 1 cut(s) | 516 |
| NspI | RCATGY | 2 cut(s) | 154, 518 |
| PceI | AGGCCT | 1 cut(s) | 163 |
| PciI | ACATGT | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 220 |
| PinAI | ACCGGT | 1 cut(s) | 93 |
| PkrI | GCNGC | 3 cut(s) | 367, 370, 373 |
| PmaCI | CACGTG | 1 cut(s) | 459 |
| PmlI | CACGTG | 1 cut(s) | 459 |
| Ppu21I | YACGTR | 1 cut(s) | 459 |
| PscI | ACATGT | 1 cut(s) | 150 |
| Psp6I | CCWGG | 2 cut(s) | 178, 620 |
| PspCI | CACGTG | 1 cut(s) | 459 |
| PspEI | GGTNACC | 1 cut(s) | 89 |
| PspGI | CCWGG | 2 cut(s) | 178, 620 |
| PspN4I | GGNNCC | 1 cut(s) | 797 |
| PspPI | GGNCC | 1 cut(s) | 196 |
| PstI | CTGCAG | 1 cut(s) | 370 |
| PstNI | CAGNNNCTG | 1 cut(s) | 385 |
| PsuI | RGATCY | 1 cut(s) | 250 |
| PvuII | CAGCTG | 1 cut(s) | 371 |
| RruI | TCGCGA | 1 cut(s) | 690 |
| RsaI | GTAC | 3 cut(s) | 31, 155, 500 |
| RsaNI | GTAC | 3 cut(s) | 30, 154, 499 |
| RseI | CAYNNNNRTG | 2 cut(s) | 515, 708 |
| SaqAI | TTAA | 1 cut(s) | 348 |
| SatI | GCNGC | 3 cut(s) | 366, 369, 372 |
| Sau3AI | GATC | 5 cut(s) | 250, 358, 569, 649, 685 |
| Sau96I | GGNCC | 1 cut(s) | 196 |
| ScrFI | CCNGG | 4 cut(s) | 180, 622, 800, 801 |
| SduI | GDGCHC | 3 cut(s) | 101, 231, 800 |
| SfcI | CTRYAG | 1 cut(s) | 366 |
| SmaI | CCCGGG | 1 cut(s) | 801 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 515, 708 |
| Sse9I | AATT | 3 cut(s) | 49, 505, 665 |
| SseBI | AGGCCT | 1 cut(s) | 163 |
| SsiI | CCGC | 5 cut(s) | 5, 212, 448, 577, 807 |
| StuI | AGGCCT | 1 cut(s) | 163 |
| StyD4I | CCNGG | 4 cut(s) | 178, 620, 798, 799 |
| TaaI | ACNGT | 5 cut(s) | 116, 491, 503, 701, 755 |
| TaiI | ACGT | 4 cut(s) | 336, 412, 461, 649 |
| TaqI | TCGA | 2 cut(s) | 207, 530 |
| TaqII | GACCGA | 1 cut(s) | 657 |
| TasI | AATT | 3 cut(s) | 49, 505, 665 |
| TfiI | GAWTC | 1 cut(s) | 220 |
| Tru1I | TTAA | 1 cut(s) | 348 |
| Tru9I | TTAA | 1 cut(s) | 348 |
| TscAI | CASTG | 1 cut(s) | 730 |
| TseFI | GTSAC | 3 cut(s) | 89, 302, 436 |
| TseI | GCWGC | 3 cut(s) | 365, 368, 371 |
| Tsp45I | GTSAC | 3 cut(s) | 89, 302, 436 |
| TspDTI | ATGAA | 2 cut(s) | 486, 499 |
| TspGWI | ACGGA | 1 cut(s) | 455 |
| TspMI | CCCGGG | 1 cut(s) | 799 |
| TspRI | CASTG | 1 cut(s) | 730 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 786 |
| XapI | RAATTY | 1 cut(s) | 665 |
| XceI | RCATGY | 2 cut(s) | 154, 518 |
| XmaI | CCCGGG | 1 cut(s) | 799 |
| ZraI | GACGTC | 1 cut(s) | 410 |
| Zsp2I | ATGCAT | 1 cut(s) | 516 |