Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006476

Physical Location & Seq

Genomic Coordinates Reverse (-)

23097565 .. 23101076

Gene Structure 3512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCGGAGCACTTGGCTTCAATCTTCGGGACGGAGAAGGACAGAGTGAATTGCCCCTTCTACTTCAAAATTGGCGCGTGCAGGCACGGCGATCGCTGCTCCAGGCTCCACACCAAGCCCAGCGTCAGCCCAACGCTGTTGCTATCCAACATGTATCAGAGGCCCGATATGATCACCCCCGGCGTCGACGCTCAGGGCCAACCTATCGACCCCCGCAAGATGCAATCCCACTTCGAGGAATTTTATGAGGATCTCTTTCAAGAGTTGAGTAAGTATGGGGAAATCGAAAGCCTGAATGTCTGCGACAACCTTGCTGACCACATGGTGGGCAATGTGTATGTTCAGTTTCGGGAGGAAGAACATGCTGCAAACGCACTCAAGAATCTGACTGGAAGATTTTATGCTGGGCGTCCTATCATTGTGGACTTCTCTCCGGTGACAGACTTCCGTGAAGCCACCTGCAGGCAATATGAGGAAAATACATGCAATCGTGGTGGATACTGCAATTTTATGCATCTGAAAAGGATTGGGAGGGAATTGAGACATGAATTATTTAGGAACTACTGGCGAAGGCATAGCCGGAGTCGAAGCAGGAGCCGCAGCCCTTACAGGCATCGTAGTTATGAAGAACGCTCCCATGGTAGCCATGGTCATAGCAGAAGGTATGATGATGAGGATCACTATCTTGAGAGAAGGAACAGGACCATAAGCCCTGGTCGAAGTAGGCAGGAACACAGTAGAAGCAGGAGCACTGAAAGGAGGAGGAGAAGGCATCCCAGTCCAGTTAGAGAAGGCAGTGAGGAGAGAAGAGCCAAAATTGAGCAGTGGAACAGGGAAAGAGAACAAAAGGAAACTGCATCTAAGTTCAGCCCTGCCAATAATGGGCATGTTCAAACTGAAAATCATGAGAATGGCTACGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

308

Amino Acids

36.49

Weight (kDa)

9.23

Isoelectric Point (pI)

81.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	14 - 37	2.3e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
RRM_1	PF00076	83 - 139	7.7e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27650 AT1G27650
fragaria_vesca	FvH4_3g29970 FvH4_3g29970 FvH4_3g29970 FvH4_3g29970
malus_domestica	MD03G1134200.v1.1 MD11G1156400.v1.1
prunus_persica	Prupe.6G118600_v2.0.a1 Prupe.6G118600_v2.0.a1
pyrus_communis	pycom03g09020 pycom11g12700
rosa_chinensis	RchiOBHm_Chr5g0055381 RchiOBHm_Chr5g0055431
rosa_laevigata	RLG00000034985
rosa_multiflora	Rmu_sc0001673.1_g000027 Rmu_sc0014407.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024920 Rroxscaffold_1G00024960
rosa_samantha	Rh5AG362400 Rh5BG374600 Rh5CG396200 Rh5CG396400 Rh5DG387700
rosa_wichuraiana	Rw5G034090 Rw5G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	1 cut(s)	77
AciI	CCGC	3 cut(s)	5, 214, 598
AclWI	GGATC	2 cut(s)	258, 684
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	2 cut(s)	183, 409
AdeI	CACNNNGTG	1 cut(s)	325
AfiI	CCNNNNNNNGG	4 cut(s)	235, 325, 462, 882
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	4 cut(s)	21, 67, 260, 893
AjnI	CCWGG	2 cut(s)	101, 712
Alw21I	GWGCWC	2 cut(s)	12, 752
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	2 cut(s)	258, 684
AoxI	GGCC	2 cut(s)	161, 196
ApeKI	GCWGC	3 cut(s)	96, 365, 600
ApoI	RAATTY	1 cut(s)	239
AsiSI	GCGATCGC	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	3 cut(s)	162, 196, 702
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	166, 448
AvaII	GGWCC	1 cut(s)	702
Bbv12I	GWGCWC	2 cut(s)	12, 752
BbvI	GCAGC	3 cut(s)	83, 352, 612
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	4 cut(s)	74, 108, 293, 327
BciT130I	CCWGG	2 cut(s)	103, 714
BciVI	GTATCC	1 cut(s)	491
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	535
BfmI	CTRYAG	1 cut(s)	460
BfuAI	ACCTGC	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	491
BisI	GCNGC	4 cut(s)	97, 366, 598, 601
BlsI	GCNGC	4 cut(s)	98, 367, 599, 602
Bme1390I	CCNGG	3 cut(s)	103, 180, 714
Bme18I	GGWCC	1 cut(s)	702
BmgT120I	GGNCC	3 cut(s)	162, 196, 702
BmiI	GGNNCC	2 cut(s)	107, 596
BmrFI	CCNGG	3 cut(s)	103, 180, 714
BmrI	ACTGGG	1 cut(s)	771
BmsI	GCATC	5 cut(s)	210, 523, 622, 781, 866
BmuI	ACTGGG	1 cut(s)	771
BpmI	CTGGAG	1 cut(s)	85
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	2 cut(s)	362, 707
BpuMI	CCSGG	1 cut(s)	180
BsaBI	GATNNNNATC	2 cut(s)	675, 681
BsaHI	GRCGYC	2 cut(s)	183, 409
BsaJI	CCNNGG	4 cut(s)	178, 637, 646, 712
BsaWI	WCCGGW	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	4 cut(s)	235, 325, 462, 882
Bse1I	ACTGG	4 cut(s)	394, 569, 777, 782
Bse3DI	GCAATG	1 cut(s)	337
Bse8I	GATNNNNATC	2 cut(s)	675, 681
BseBI	CCWGG	2 cut(s)	103, 714
BseDI	CCNNGG	4 cut(s)	178, 637, 646, 712
BseGI	GGATG	1 cut(s)	772
BseJI	GATNNNNATC	2 cut(s)	675, 681
BseLI	CCNNNNNNNGG	4 cut(s)	235, 325, 462, 882
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	4 cut(s)	394, 569, 777, 782
BseRI	GAGGAG	3 cut(s)	775, 778, 815
BseXI	GCAGC	3 cut(s)	83, 352, 612
BseYI	CCCAGC	2 cut(s)	119, 404
BsgI	GTGCAG	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	163, 198
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	12, 752
BsiSI	CCGG	3 cut(s)	180, 434, 580
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	4 cut(s)	235, 325, 462, 882
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	163, 198
Bsp1286I	GDGCHC	2 cut(s)	12, 752
Bsp143I	GATC	4 cut(s)	91, 171, 250, 676
Bsp19I	CCATGG	2 cut(s)	637, 646
BspACI	CCGC	3 cut(s)	5, 214, 598
BspANI	GGCC	2 cut(s)	163, 198
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	904
BspLI	GGNNCC	2 cut(s)	107, 596
BspMAI	CTGCAG	1 cut(s)	464
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	2 cut(s)	258, 684
BspQI	GCTCTTC	1 cut(s)	802
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	4 cut(s)	394, 569, 777, 782
BssECI	CCNNGG	4 cut(s)	178, 637, 646, 712
BssMI	GATC	4 cut(s)	91, 171, 250, 676
BssNI	GRCGYC	2 cut(s)	183, 409
BssT1I	CCWWGG	2 cut(s)	637, 646
Bst2UI	CCWGG	2 cut(s)	103, 714
Bst4CI	ACNGT	1 cut(s)	737
Bst6I	CTCTTC	1 cut(s)	802
BstACI	GRCGYC	2 cut(s)	183, 409
BstC8I	GCNNGC	3 cut(s)	79, 83, 464
BstDEI	CTNAG	2 cut(s)	192, 861
BstDSI	CCRYGG	2 cut(s)	637, 646
BstF5I	GGATG	1 cut(s)	772
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	4 cut(s)	94, 174, 253, 679
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	4 cut(s)	91, 171, 250, 676
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 96, 371, 597
BstNI	CCWGG	2 cut(s)	103, 714
BstNSI	RCATGY	4 cut(s)	154, 365, 486, 890
BstSCI	CCNGG	3 cut(s)	101, 178, 712
BstSFI	CTRYAG	1 cut(s)	460
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	3 cut(s)	83, 352, 612
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	2 cut(s)	163, 198
BtgI	CCRYGG	2 cut(s)	637, 646
BtsCI	GGATG	1 cut(s)	772
BtsI	GCAGTG	2 cut(s)	802, 830
BtsIMutI	CAGTG	3 cut(s)	750, 802, 830
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	3 cut(s)	79, 83, 464
CciI	TCATGA	1 cut(s)	904
CfoI	GCGC	1 cut(s)	77
Cfr13I	GGNCC	3 cut(s)	162, 196, 702
CseI	GACGC	4 cut(s)	112, 172, 197, 398
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	9 cut(s)	151, 322, 362, 483, 545, 638, 647, 887, 905
DdeI	CTNAG	2 cut(s)	192, 861
DpnI	GATC	4 cut(s)	93, 173, 252, 678
DpnII	GATC	4 cut(s)	91, 171, 250, 676
DraIII	CACNNNGTG	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	802
EarI	CTCTTC	1 cut(s)	802
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	637, 646
Eco47I	GGWCC	1 cut(s)	702
EcoRII	CCWGG	2 cut(s)	101, 712
EcoT14I	CCWWGG	2 cut(s)	637, 646
EcoT22I	ATGCAT	1 cut(s)	516
ErhI	CCWWGG	2 cut(s)	637, 646
FaeI	CATG	9 cut(s)	154, 325, 365, 486, 548, 641, 650, 890, 908
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	9 cut(s)	150, 321, 361, 482, 544, 637, 646, 886, 904
FauI	CCCGC	1 cut(s)	221
FbaI	TGATCA	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	4 cut(s)	97, 366, 598, 601
FokI	GGATG	1 cut(s)	759
Fsp4HI	GCNGC	4 cut(s)	97, 366, 598, 601
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	4 cut(s)	97, 366, 598, 601
GsaI	CCCAGC	2 cut(s)	123, 408
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	163, 198
HapII	CCGG	3 cut(s)	180, 434, 580
HgaI	GACGC	4 cut(s)	112, 172, 197, 398
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	2 cut(s)	183, 409
Hin1II	CATG	9 cut(s)	154, 325, 365, 486, 548, 641, 650, 890, 908
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	2 cut(s)	382, 583
HpaII	CCGG	3 cut(s)	180, 434, 580
HphI	GGTGA	2 cut(s)	166, 448
Hpy166II	GTNNAC	2 cut(s)	187, 424
Hpy188I	TCNGA	3 cut(s)	159, 387, 519
Hpy188III	TCNNGA	6 cut(s)	28, 260, 350, 379, 686, 905
Hpy8I	GTNNAC	2 cut(s)	187, 424
Hpy99I	CGWCG	2 cut(s)	188, 191
HpyAV	CCTTC	7 cut(s)	31, 67, 564, 654, 687, 762, 785
HpyCH4III	ACNGT	1 cut(s)	737
HpyCH4V	TGCA	8 cut(s)	81, 223, 368, 462, 486, 504, 514, 857
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 96, 371, 597
HpyF3I	CTNAG	2 cut(s)	192, 861
Hsp92I	GRCGYC	2 cut(s)	183, 409
Hsp92II	CATG	9 cut(s)	154, 325, 365, 486, 548, 641, 650, 890, 908
HspAI	GCGC	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	91, 171, 250, 676
LguI	GCTCTTC	1 cut(s)	802
LmnI	GCTCC	6 cut(s)	7, 104, 111, 594, 638, 747
Lsp1109I	GCAGC	3 cut(s)	83, 352, 612
LweI	GCATC	5 cut(s)	210, 523, 622, 781, 866
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	4 cut(s)	93, 173, 252, 678
MboI	GATC	4 cut(s)	91, 171, 250, 676
MboII	GAAGA	5 cut(s)	16, 368, 405, 638, 819
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	2 cut(s)	12, 752
MluCI	AATT	7 cut(s)	49, 69, 239, 505, 536, 548, 816
MlyI	GAGTC	1 cut(s)	592
MmeI	TCCRAC	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	516
MslI	CAYNNNNRTG	1 cut(s)	909
MspI	CCGG	3 cut(s)	180, 434, 580
MspR9I	CCNGG	3 cut(s)	103, 180, 714
MvaI	CCWGG	2 cut(s)	103, 714
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	87, 96, 371, 597
NciI	CCSGG	1 cut(s)	180
NcoI	CCATGG	2 cut(s)	637, 646
NdeII	GATC	4 cut(s)	91, 171, 250, 676
NlaIII	CATG	9 cut(s)	154, 325, 365, 486, 548, 641, 650, 890, 908
NlaIV	GGNNCC	2 cut(s)	107, 596
NmuCI	GTSAC	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	516
NspI	RCATGY	4 cut(s)	154, 365, 486, 890
PagI	TCATGA	1 cut(s)	904
PaqCI	CACCTGC	1 cut(s)	467
PciI	ACATGT	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	802
PfeI	GAWTC	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	4 cut(s)	98, 367, 599, 602
Ple19I	CGATCG	1 cut(s)	94
PleI	GAGTC	1 cut(s)	591
PpsI	GAGTC	1 cut(s)	591
PscI	ACATGT	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	101, 712
PspFI	CCCAGC	2 cut(s)	119, 404
PspGI	CCWGG	2 cut(s)	101, 712
PspN4I	GGNNCC	2 cut(s)	107, 596
PspPI	GGNCC	3 cut(s)	162, 196, 702
PstI	CTGCAG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	250
PvuI	CGATCG	1 cut(s)	94
RgaI	GCGATCGC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	909
SalI	GTCGAC	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	802
SatI	GCNGC	4 cut(s)	97, 366, 598, 601
Sau3AI	GATC	4 cut(s)	91, 171, 250, 676
Sau96I	GGNCC	3 cut(s)	162, 196, 702
SbfI	CCTGCAGG	1 cut(s)	464
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	3 cut(s)	103, 180, 714
SdaI	CCTGCAGG	1 cut(s)	464
SduI	GDGCHC	2 cut(s)	12, 752
SetI	ASST	4 cut(s)	205, 312, 461, 665
SfaAI	GCGATCGC	1 cut(s)	94
SfaNI	GCATC	5 cut(s)	210, 523, 622, 781, 866
SfcI	CTRYAG	1 cut(s)	460
SgfI	GCGATCGC	1 cut(s)	94
SgrDI	CGTCGACG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	702
SmiMI	CAYNNNNRTG	1 cut(s)	909
SmlI	CTYRAG	2 cut(s)	377, 686
SmoI	CTYRAG	2 cut(s)	377, 686
Sse8387I	CCTGCAGG	1 cut(s)	464
Sse9I	AATT	7 cut(s)	49, 69, 239, 505, 536, 548, 816
SsiI	CCGC	3 cut(s)	5, 214, 598
StyD4I	CCNGG	3 cut(s)	101, 178, 712
StyI	CCWWGG	2 cut(s)	637, 646
TaaI	ACNGT	1 cut(s)	737
TaqI	TCGA	6 cut(s)	186, 207, 234, 285, 586, 718
TasI	AATT	7 cut(s)	49, 69, 239, 505, 536, 548, 816
TauI	GCSGC	1 cut(s)	600
TfiI	GAWTC	1 cut(s)	382
TscAI	CASTG	3 cut(s)	757, 802, 830
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	3 cut(s)	96, 365, 600
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	2 cut(s)	561, 639
TspGWI	ACGGA	2 cut(s)	47, 437
TspRI	CASTG	3 cut(s)	757, 802, 830
Van91I	CCANNNNNTGG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	702
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	4 cut(s)	154, 365, 486, 890
XcmI	CCANNNNNNNNNTGG	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	186
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.