Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006476

Physical Location & Seq

Genomic Coordinates Forward (+)

15060112 .. 15063593

Gene Structure 3482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1156400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCGGAGCACTTGGCTTCGATATTCGGGACGGAGAAGGACCGAGTGAACTGCCCTTTCTACTTCAAAATTGGGGCTTGCAGGCACGGCGACCGCTGCTCCAGACTCCACACCAAGCCCAGCGTCAGCCCCACGCTCCTGCTCTCCAACATGTACCAGCGGCCCGATATGATCACCCCCGGCGTCGACGCCCAGGGCCAGCCCATCGACCCCCGCCAGATGCAAAGGCACTTCGAGGAGTTTTATGAGGATCTATATCAGGAGTTGAGTAAGTATGGCGACATTGAAAGTCTGAATGTCTGTGACAACCTAGCCGACCACATGGTGGGCAATGTGTACGTTCAGTTTAGGGAGGAAGATCACGCTGCAAATGCACTTCGGAACCTGAGTGGAAGATTTTATGCTGGTCGTCCTATCATTGTTGACTATTCACCAGTGACAAACTTCCGTGAAGCCACCTGCAGGCAATATGAGGAGAATACATGCAACCGTGGTGGATACTGCAATTTTATGCACCTGAAAAGGATTGGCAGGGAATTGAGGCGTGAATTATTTGGAAGCTATCGGAGAAGGCACAGCCACAGTCGAAGTAGGAGTCGCAGCCCTTACAGGCATCGTAGTTACGAAGAGCGCTCTCATGGGAGCCGTGCTCTTAGCAGAAGGTATGATGATGATGATCGTTATCCTGAAAGCTGGAGCCGGAGGAACAAGACTCTAAGCCCTGGTCGAAAGAGAGGACGCAGTAGAAGTAGAAGCCCTGGAAGAAGAAGAAACCACAGTCCAGTTAGAGAAGGAAGTGAGGAGAGACGGGCCAAAATTGAGCAGTGGAATAGGGAAAAAGAACAGAATGAAAATGCTAGTAGGGTCAACACTGACAGAAGCGACAATGATGGGCATGCACATATGGAAAATCAGTACAATGGCCATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

311

Amino Acids

36.63

Weight (kDa)

9.47

Isoelectric Point (pI)

76.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	14 - 37	2.3e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
RRM_1	PF00076	83 - 139	3.5e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27650 AT1G27650
fragaria_vesca	FvH4_3g29970 FvH4_3g29970 FvH4_3g29970 FvH4_3g29970
malus_domestica	MD03G1134200.v1.1 MD11G1156400.v1.1
prunus_persica	Prupe.6G118600_v2.0.a1 Prupe.6G118600_v2.0.a1
pyrus_communis	pycom03g09020 pycom11g12700
rosa_chinensis	RchiOBHm_Chr5g0055381 RchiOBHm_Chr5g0055431
rosa_laevigata	RLG00000034985
rosa_multiflora	Rmu_sc0001673.1_g000027 Rmu_sc0014407.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024920 Rroxscaffold_1G00024960
rosa_samantha	Rh5AG362400 Rh5BG374600 Rh5CG396200 Rh5CG396400 Rh5DG387700
rosa_wichuraiana	Rw5G034090 Rw5G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	4 cut(s)	5, 94, 160, 214
AclWI	GGATC	1 cut(s)	258
AcoI	YGGCCR	1 cut(s)	922
AcyI	GRCGYC	2 cut(s)	183, 189
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	3 cut(s)	155, 338, 917
AfeI	AGCGCT	1 cut(s)	632
AfiI	CCNNNNNNNGG	2 cut(s)	325, 462
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	67, 287
AjnI	CCWGG	3 cut(s)	192, 721, 757
AluBI	AGCT	2 cut(s)	561, 693
AluI	AGCT	2 cut(s)	561, 693
Alw21I	GWGCWC	2 cut(s)	12, 652
Alw26I	GTCTC	1 cut(s)	799
AlwI	GGATC	1 cut(s)	258
Aor51HI	AGCGCT	1 cut(s)	632
AoxI	GGCC	4 cut(s)	161, 196, 810, 922
ApeKI	GCWGC	3 cut(s)	96, 365, 600
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
AspLEI	GCGC	1 cut(s)	633
AspS9I	GGNCC	4 cut(s)	40, 162, 196, 810
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	166, 423
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	924
Bbv12I	GWGCWC	2 cut(s)	12, 652
BbvI	GCAGC	3 cut(s)	83, 352, 612
BccI	CCATC	2 cut(s)	212, 884
BceAI	ACGGC	2 cut(s)	103, 630
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BciT130I	CCWGG	3 cut(s)	194, 723, 759
BciVI	GTATCC	1 cut(s)	491
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	799
BfaI	CTAG	2 cut(s)	311, 858
BfmI	CTRYAG	1 cut(s)	460
BfoI	RGCGCY	1 cut(s)	634
BfuAI	ACCTGC	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	491
BisI	GCNGC	4 cut(s)	97, 161, 366, 601
BlsI	GCNGC	4 cut(s)	98, 162, 367, 602
Bme1390I	CCNGG	4 cut(s)	180, 194, 723, 759
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	4 cut(s)	40, 162, 196, 810
BmiI	GGNNCC	3 cut(s)	383, 644, 698
BmrFI	CCNGG	4 cut(s)	180, 194, 723, 759
BmsI	GCATC	2 cut(s)	210, 622
BplI	GAGNNNNNCTC	2 cut(s)	634, 666
BpmI	CTGGAG	2 cut(s)	85, 715
BpuMI	CCSGG	1 cut(s)	180
BsaBI	GATNNNNATC	3 cut(s)	255, 675, 681
BsaHI	GRCGYC	2 cut(s)	183, 189
BsaJI	CCNNGG	6 cut(s)	178, 192, 193, 490, 721, 757
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 462
Bse1I	ACTGG	2 cut(s)	434, 782
Bse3DI	GCAATG	1 cut(s)	337
Bse8I	GATNNNNATC	3 cut(s)	255, 675, 681
BseBI	CCWGG	3 cut(s)	194, 723, 759
BseDI	CCNNGG	6 cut(s)	178, 192, 193, 490, 721, 757
BseJI	GATNNNNATC	3 cut(s)	255, 675, 681
BseLI	CCNNNNNNNGG	2 cut(s)	325, 462
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	2 cut(s)	434, 782
BseRI	GAGGAG	3 cut(s)	251, 488, 815
BseXI	GCAGC	3 cut(s)	83, 352, 612
BseYI	CCCAGC	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	4 cut(s)	163, 198, 812, 924
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	12, 652
BsiSI	CCGG	2 cut(s)	180, 700
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	325, 462
BsmAI	GTCTC	1 cut(s)	799
BsmBI	CGTCTC	1 cut(s)	799
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	4 cut(s)	163, 198, 812, 924
Bsp1286I	GDGCHC	2 cut(s)	12, 652
Bsp143I	GATC	4 cut(s)	171, 250, 358, 676
BspACI	CCGC	4 cut(s)	5, 94, 160, 214
BspANI	GGCC	4 cut(s)	163, 198, 812, 924
BspCNI	CTCAG	1 cut(s)	378
BspLI	GGNNCC	3 cut(s)	383, 644, 698
BspMAI	CTGCAG	1 cut(s)	464
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	1 cut(s)	258
BspQI	GCTCTTC	1 cut(s)	621
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	434, 782
BssECI	CCNNGG	6 cut(s)	178, 192, 193, 490, 721, 757
BssMI	GATC	4 cut(s)	171, 250, 358, 676
BssNI	GRCGYC	2 cut(s)	183, 189
Bst2UI	CCWGG	3 cut(s)	194, 723, 759
Bst4CI	ACNGT	3 cut(s)	491, 584, 779
Bst6I	CTCTTC	1 cut(s)	621
BstACI	GRCGYC	2 cut(s)	183, 189
BstC8I	GCNNGC	5 cut(s)	79, 83, 200, 464, 897
BstDEI	CTNAG	3 cut(s)	386, 653, 716
BstDSI	CCRYGG	1 cut(s)	490
BstH2I	RGCGCY	1 cut(s)	634
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	4 cut(s)	174, 253, 361, 679
BstMAI	GTCTC	1 cut(s)	799
BstMBI	GATC	4 cut(s)	171, 250, 358, 676
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 96, 371
BstNI	CCWGG	3 cut(s)	194, 723, 759
BstNSI	RCATGY	3 cut(s)	154, 486, 899
BstSCI	CCNGG	4 cut(s)	178, 192, 721, 757
BstSFI	CTRYAG	1 cut(s)	460
BstV1I	GCAGC	3 cut(s)	83, 352, 612
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	4 cut(s)	163, 198, 812, 924
BtgI	CCRYGG	1 cut(s)	490
BtsI	GCAGTG	1 cut(s)	830
BtsIMutI	CAGTG	3 cut(s)	441, 830, 870
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	5 cut(s)	79, 83, 200, 464, 897
CfoI	GCGC	1 cut(s)	633
Cfr13I	GGNCC	4 cut(s)	40, 162, 196, 810
CseI	GACGC	4 cut(s)	112, 172, 197, 747
Csp6I	GTAC	3 cut(s)	154, 337, 916
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	6 cut(s)	151, 322, 483, 638, 896, 926
CviQI	GTAC	3 cut(s)	154, 337, 916
DdeI	CTNAG	3 cut(s)	386, 653, 716
DpnI	GATC	4 cut(s)	173, 252, 360, 678
DpnII	GATC	4 cut(s)	171, 250, 358, 676
DraIII	CACNNNGTG	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	922
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	40
Eco47III	AGCGCT	1 cut(s)	632
EcoRII	CCWGG	3 cut(s)	192, 721, 757
Esp3I	CGTCTC	1 cut(s)	799
FaeI	CATG	6 cut(s)	154, 325, 486, 641, 899, 929
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	6 cut(s)	150, 321, 482, 637, 895, 925
FauI	CCCGC	1 cut(s)	221
FauNDI	CATATG	1 cut(s)	903
FbaI	TGATCA	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	4 cut(s)	97, 161, 366, 601
Fsp4HI	GCNGC	4 cut(s)	97, 161, 366, 601
FspBI	CTAG	2 cut(s)	311, 858
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	4 cut(s)	97, 161, 366, 601
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	2 cut(s)	85, 715
HaeII	RGCGCY	1 cut(s)	634
HaeIII	GGCC	4 cut(s)	163, 198, 812, 924
HapII	CCGG	2 cut(s)	180, 700
HgaI	GACGC	4 cut(s)	112, 172, 197, 747
HhaI	GCGC	1 cut(s)	633
Hin1I	GRCGYC	2 cut(s)	183, 189
Hin1II	CATG	6 cut(s)	154, 325, 486, 641, 899, 929
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HincII	GTYRAC	3 cut(s)	187, 424, 868
HindII	GTYRAC	3 cut(s)	187, 424, 868
HinfI	GANTC	3 cut(s)	105, 595, 712
HpaII	CCGG	2 cut(s)	180, 700
HphI	GGTGA	2 cut(s)	166, 423
Hpy166II	GTNNAC	5 cut(s)	49, 187, 337, 424, 868
Hpy188I	TCNGA	3 cut(s)	294, 381, 567
Hpy188III	TCNNGA	4 cut(s)	28, 102, 260, 686
Hpy8I	GTNNAC	5 cut(s)	49, 187, 337, 424, 868
Hpy99I	CGWCG	2 cut(s)	188, 191
HpyAV	CCTTC	4 cut(s)	31, 564, 654, 785
HpyCH4III	ACNGT	3 cut(s)	491, 584, 779
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	9 cut(s)	81, 223, 368, 374, 462, 486, 504, 514, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 96, 371
HpyF3I	CTNAG	3 cut(s)	386, 653, 716
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	2 cut(s)	183, 189
Hsp92II	CATG	6 cut(s)	154, 325, 486, 641, 899, 929
HspAI	GCGC	1 cut(s)	631
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	171, 250, 358, 676
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	5 cut(s)	7, 104, 141, 642, 696
Lsp1109I	GCAGC	3 cut(s)	83, 352, 612
LweI	GCATC	2 cut(s)	210, 622
MaeI	CTAG	2 cut(s)	311, 858
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	3 cut(s)	302, 436, 620
MalI	GATC	4 cut(s)	173, 252, 360, 678
MboI	GATC	4 cut(s)	171, 250, 358, 676
MboII	GAAGA	6 cut(s)	368, 405, 638, 774, 777, 780
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	2 cut(s)	12, 652
MlsI	TGGCCA	1 cut(s)	924
MluCI	AATT	5 cut(s)	69, 505, 536, 548, 816
MluNI	TGGCCA	1 cut(s)	924
MlyI	GAGTC	3 cut(s)	99, 604, 706
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	8 cut(s)	229, 241, 346, 466, 534, 696, 728, 793
Mox20I	TGGCCA	1 cut(s)	924
MscI	TGGCCA	1 cut(s)	924
Msp20I	TGGCCA	1 cut(s)	924
MspA1I	CMGCKG	2 cut(s)	96, 160
MspI	CCGG	2 cut(s)	180, 700
MspR9I	CCNGG	4 cut(s)	180, 194, 723, 759
MvaI	CCWGG	3 cut(s)	194, 723, 759
MwoI	GCNNNNNNNGC	3 cut(s)	87, 96, 371
NciI	CCSGG	1 cut(s)	180
NdeI	CATATG	1 cut(s)	903
NdeII	GATC	4 cut(s)	171, 250, 358, 676
NlaIII	CATG	6 cut(s)	154, 325, 486, 641, 899, 929
NlaIV	GGNNCC	3 cut(s)	383, 644, 698
NmuCI	GTSAC	2 cut(s)	302, 436
NspI	RCATGY	3 cut(s)	154, 486, 899
PaeI	GCATGC	1 cut(s)	899
PaqCI	CACCTGC	1 cut(s)	467
PasI	CCCWGGG	1 cut(s)	193
PciI	ACATGT	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	621
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	4 cut(s)	98, 162, 367, 602
PleI	GAGTC	3 cut(s)	99, 603, 706
PpsI	GAGTC	3 cut(s)	99, 603, 706
PscI	ACATGT	1 cut(s)	150
Psp6I	CCWGG	3 cut(s)	192, 721, 757
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	3 cut(s)	192, 721, 757
PspN4I	GGNNCC	3 cut(s)	383, 644, 698
PspPI	GGNCC	4 cut(s)	40, 162, 196, 810
PstI	CTGCAG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	3 cut(s)	155, 338, 917
RsaNI	GTAC	3 cut(s)	154, 337, 916
SalI	GTCGAC	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	621
SatI	GCNGC	4 cut(s)	97, 161, 366, 601
Sau3AI	GATC	4 cut(s)	171, 250, 358, 676
Sau96I	GGNCC	4 cut(s)	40, 162, 196, 810
SbfI	CCTGCAGG	1 cut(s)	464
SchI	GAGTC	3 cut(s)	99, 604, 706
ScrFI	CCNGG	4 cut(s)	180, 194, 723, 759
SdaI	CCTGCAGG	1 cut(s)	464
SduI	GDGCHC	2 cut(s)	12, 652
SetI	ASST	8 cut(s)	312, 342, 387, 461, 519, 563, 665, 695
SfaNI	GCATC	2 cut(s)	210, 622
SfcI	CTRYAG	1 cut(s)	460
SgrDI	CGTCGACG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	40
SphI	GCATGC	1 cut(s)	899
Sse8387I	CCTGCAGG	1 cut(s)	464
Sse9I	AATT	5 cut(s)	69, 505, 536, 548, 816
SsiI	CCGC	4 cut(s)	5, 94, 160, 214
SspMI	CTAG	2 cut(s)	311, 858
StyD4I	CCNGG	4 cut(s)	178, 192, 721, 757
TaaI	ACNGT	3 cut(s)	491, 584, 779
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	6 cut(s)	20, 186, 207, 234, 586, 727
TaqII	GACCGA	1 cut(s)	57
TasI	AATT	5 cut(s)	69, 505, 536, 548, 816
TatI	WGTACW	1 cut(s)	915
TauI	GCSGC	1 cut(s)	163
TscAI	CASTG	3 cut(s)	441, 830, 877
TseFI	GTSAC	2 cut(s)	302, 436
TseI	GCWGC	3 cut(s)	96, 365, 600
Tsp45I	GTSAC	2 cut(s)	302, 436
TspDTI	ATGAA	1 cut(s)	864
TspGWI	ACGGA	2 cut(s)	47, 437
TspRI	CASTG	3 cut(s)	441, 830, 877
Van91I	CCANNNNNTGG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	40
XceI	RCATGY	3 cut(s)	154, 486, 899
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	2 cut(s)	311, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.