Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014407.1

Orthogroup ID

OG0006476

Physical Location & Seq

Genomic Coordinates Reverse (-)

2736 .. 5469

Gene Structure 2734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014407.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgggctttcataagcttatcgggtttgttatgtggcaacctggtgcactattcaatggtgtaggggttaatcctgcaggtcagggtattaaccacatgttgctcagcgtcagcccgactctgttgctctccaatatgtaccagaggcccgatatgatcacccccggcgtcgacgcccagggccagcctatcgacccccgccagatgcaaacccatttcgaggaattttatgaggatctctttcaagagctgagtaagtatggagaaattgaaagcctgaatgtctgcgacaacctagctgaccacatggtgggcaatgtgtatgttcagttcagggaggaagagcatgctgcaaatgcactcaagaatctgactggaagattttatgctgggcgtcctatcattgtggacttctctccggtgacagacttccgtgaagccacctgcaggcaatatgaggaaaatacatgcaatcgtggtggatactgcaactttatgcatctgaaaaggattgggagggaattgaggcgtgagttatttaggagctaccggcgaaggcatagccggagtcgaagcaggagccgcagcccttacaggcatcgtagctatgaagaacgccctcatggtagccatggtcatagcagaaggtatgatgacggggatcggtatcctgagagaaggaacaggactgtaagccctggccgaagtaggcgggaacgcagtagaagcaggagcactgaaaggaggaggagaaggaaccccagtccagttagagaaggcagtgaggagagacgagccaaaattgaacagtggaacagggaaagagaacaaaatgaaattgcttccaaggtcacatctgtcagaagtgacaatgggcatgctcaaactgaaaatcagaacggctatgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

303

Amino Acids

35.64

Weight (kDa)

9.79

Isoelectric Point (pI)

79.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27650 AT1G27650
fragaria_vesca	FvH4_3g29970 FvH4_3g29970 FvH4_3g29970 FvH4_3g29970
malus_domestica	MD03G1134200.v1.1 MD11G1156400.v1.1
prunus_persica	Prupe.6G118600_v2.0.a1 Prupe.6G118600_v2.0.a1
pyrus_communis	pycom03g09020 pycom11g12700
rosa_chinensis	RchiOBHm_Chr5g0055381 RchiOBHm_Chr5g0055431
rosa_laevigata	RLG00000034985
rosa_multiflora	Rmu_sc0001673.1_g000027 Rmu_sc0014407.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024920 Rroxscaffold_1G00024960
rosa_samantha	Rh5AG362400 Rh5BG374600 Rh5CG396200 Rh5CG396400 Rh5DG387700
rosa_wichuraiana	Rw5G034090 Rw5G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	452
Acc36I	ACCTGC	2 cut(s)	68, 452
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	171
AciI	CCGC	3 cut(s)	199, 583, 712
AclWI	GGATC	2 cut(s)	243, 669
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	1 cut(s)	224
AcyI	GRCGYC	3 cut(s)	168, 174, 394
AdeI	CACNNNGTG	1 cut(s)	310
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	3 cut(s)	220, 310, 447
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	55, 245, 272, 806
AjnI	CCWGG	3 cut(s)	40, 177, 697
AluBI	AGCT	5 cut(s)	16, 250, 299, 546, 606
AluI	AGCT	5 cut(s)	16, 250, 299, 546, 606
Alw21I	GWGCWC	2 cut(s)	49, 737
Alw26I	GTCTC	1 cut(s)	784
Alw44I	GTGCAC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	243, 669
AoxI	GGCC	3 cut(s)	146, 181, 700
ApaLI	GTGCAC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	350, 585
ApoI	RAATTY	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	147, 181
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	151, 433
BaeGI	GKGCMC	1 cut(s)	49
Bbv12I	GWGCWC	2 cut(s)	49, 737
BbvI	GCAGC	2 cut(s)	337, 597
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	3 cut(s)	42, 179, 699
BciVI	GTATCC	2 cut(s)	476, 678
BclI	TGATCA	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	784
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	2 cut(s)	75, 445
BfuAI	ACCTGC	2 cut(s)	68, 452
BfuI	GTATCC	2 cut(s)	476, 678
BisI	GCNGC	3 cut(s)	351, 583, 586
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	3 cut(s)	352, 584, 587
Bme1390I	CCNGG	4 cut(s)	42, 165, 179, 699
BmgT120I	GGNCC	2 cut(s)	147, 181
BmiI	GGNNCC	2 cut(s)	581, 758
BmrFI	CCNGG	4 cut(s)	42, 165, 179, 699
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	3 cut(s)	195, 508, 607
BmuI	ACTGGG	1 cut(s)	756
Bpu1102I	GCTNAGC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	666
BsaHI	GRCGYC	3 cut(s)	168, 174, 394
BsaJI	CCNNGG	6 cut(s)	163, 177, 178, 631, 697, 846
BsaWI	WCCGGW	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 310, 447
Bse118I	RCCGGY	1 cut(s)	549
Bse1I	ACTGG	3 cut(s)	379, 762, 767
Bse3DI	GCAATG	1 cut(s)	322
Bse8I	GATNNNNATC	1 cut(s)	666
BseBI	CCWGG	3 cut(s)	42, 179, 699
BseDI	CCNNGG	6 cut(s)	163, 177, 178, 631, 697, 846
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	3 cut(s)	220, 310, 447
BseMI	GCAATG	1 cut(s)	322
BseMII	CTCAG	3 cut(s)	118, 242, 663
BseNI	ACTGG	3 cut(s)	379, 762, 767
BseRI	GAGGAG	3 cut(s)	760, 763, 800
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	337, 597
BseYI	CCCAGC	1 cut(s)	389
BshFI	GGCC	3 cut(s)	148, 183, 702
BsiHKAI	GWGCWC	2 cut(s)	49, 737
BsiSI	CCGG	4 cut(s)	165, 419, 550, 565
BslI	CCNNNNNNNGG	3 cut(s)	220, 310, 447
BsmAI	GTCTC	1 cut(s)	784
BsmBI	CGTCTC	1 cut(s)	784
BsnI	GGCC	3 cut(s)	148, 183, 702
Bsp1286I	GDGCHC	2 cut(s)	49, 737
Bsp143I	GATC	3 cut(s)	156, 235, 661
Bsp1720I	GCTNAGC	1 cut(s)	104
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	3 cut(s)	199, 583, 712
BspANI	GGCC	3 cut(s)	148, 183, 702
BspCNI	CTCAG	3 cut(s)	117, 243, 664
BspLI	GGNNCC	2 cut(s)	581, 758
BspMAI	CTGCAG	2 cut(s)	79, 449
BspMI	ACCTGC	2 cut(s)	68, 452
BspPI	GGATC	2 cut(s)	243, 669
BspQI	GCTCTTC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	322
BsrFI	RCCGGY	1 cut(s)	549
BsrI	ACTGG	3 cut(s)	379, 762, 767
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	6 cut(s)	163, 177, 178, 631, 697, 846
BssMI	GATC	3 cut(s)	156, 235, 661
BssNI	GRCGYC	3 cut(s)	168, 174, 394
BssT1I	CCWWGG	2 cut(s)	631, 846
Bst2UI	CCWGG	3 cut(s)	42, 179, 699
Bst4CI	ACNGT	2 cut(s)	691, 810
Bst6I	CTCTTC	1 cut(s)	336
BstACI	GRCGYC	3 cut(s)	168, 174, 394
BstC8I	GCNNGC	4 cut(s)	185, 348, 449, 879
BstDEI	CTNAG	3 cut(s)	104, 251, 672
BstDSI	CCRYGG	1 cut(s)	631
BstKTI	GATC	3 cut(s)	159, 238, 664
BstMAI	GTCTC	1 cut(s)	784
BstMBI	GATC	3 cut(s)	156, 235, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 582, 726
BstNI	CCWGG	3 cut(s)	42, 179, 699
BstNSI	RCATGY	4 cut(s)	100, 350, 471, 881
BstSCI	CCNGG	4 cut(s)	40, 163, 177, 697
BstSFI	CTRYAG	2 cut(s)	75, 445
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	337, 597
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuI	GTATCC	2 cut(s)	476, 678
BsuRI	GGCC	3 cut(s)	148, 183, 702
BtgI	CCRYGG	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	787
BtsIMutI	CAGTG	3 cut(s)	735, 787, 815
BveI	ACCTGC	2 cut(s)	68, 452
Cac8I	GCNNGC	4 cut(s)	185, 348, 449, 879
Cfr10I	RCCGGY	1 cut(s)	549
Cfr13I	GGNCC	2 cut(s)	147, 181
CseI	GACGC	4 cut(s)	97, 157, 182, 383
CsiI	ACCWGGT	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	139
CspCI	CAANNNNNGTGG	2 cut(s)	460, 495
CviAII	CATG	7 cut(s)	97, 307, 347, 468, 623, 632, 878
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	3 cut(s)	104, 251, 672
DpnI	GATC	3 cut(s)	158, 237, 663
DpnII	GATC	3 cut(s)	156, 235, 661
DraIII	CACNNNGTG	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	2 cut(s)	631, 846
EcoRII	CCWGG	3 cut(s)	40, 177, 697
EcoT14I	CCWWGG	2 cut(s)	631, 846
EcoT22I	ATGCAT	1 cut(s)	501
ErhI	CCWWGG	2 cut(s)	631, 846
Esp3I	CGTCTC	1 cut(s)	784
FaeI	CATG	7 cut(s)	100, 310, 350, 471, 626, 635, 881
FatI	CATG	7 cut(s)	96, 306, 346, 467, 622, 631, 877
FauI	CCCGC	2 cut(s)	206, 705
FbaI	TGATCA	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	351, 583, 586
Fsp4HI	GCNGC	3 cut(s)	351, 583, 586
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	3 cut(s)	351, 583, 586
GsaI	CCCAGC	1 cut(s)	393
HaeIII	GGCC	3 cut(s)	148, 183, 702
HapII	CCGG	4 cut(s)	165, 419, 550, 565
HgaI	GACGC	4 cut(s)	97, 157, 182, 383
Hin1I	GRCGYC	3 cut(s)	168, 174, 394
Hin1II	CATG	7 cut(s)	100, 310, 350, 471, 626, 635, 881
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	3 cut(s)	118, 367, 568
HpaII	CCGG	4 cut(s)	165, 419, 550, 565
HphI	GGTGA	2 cut(s)	151, 433
Hpy166II	GTNNAC	3 cut(s)	47, 172, 409
Hpy188I	TCNGA	4 cut(s)	372, 504, 863, 897
Hpy188III	TCNNGA	3 cut(s)	245, 364, 671
Hpy8I	GTNNAC	3 cut(s)	47, 172, 409
Hpy99I	CGWCG	2 cut(s)	173, 176
HpyAV	CCTTC	5 cut(s)	549, 639, 672, 747, 770
HpyCH4III	ACNGT	2 cut(s)	691, 810
HpyCH4V	TGCA	9 cut(s)	47, 77, 208, 353, 359, 447, 471, 489, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 582, 726
HpyF3I	CTNAG	3 cut(s)	104, 251, 672
Hsp92I	GRCGYC	3 cut(s)	168, 174, 394
Hsp92II	CATG	7 cut(s)	100, 310, 350, 471, 626, 635, 881
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	3 cut(s)	156, 235, 661
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	3 cut(s)	543, 579, 732
Lsp1109I	GCAGC	2 cut(s)	337, 597
LweI	GCATC	3 cut(s)	195, 508, 607
MabI	ACCWGGT	1 cut(s)	40
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	3 cut(s)	421, 850, 866
MalI	GATC	3 cut(s)	158, 237, 663
MboI	GATC	3 cut(s)	156, 235, 661
MboII	GAAGA	3 cut(s)	353, 390, 623
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	2 cut(s)	49, 737
MluCI	AATT	5 cut(s)	224, 267, 521, 801, 837
MlyI	GAGTC	2 cut(s)	112, 577
Mph1103I	ATGCAT	1 cut(s)	501
MseI	TTAA	2 cut(s)	69, 90
MspI	CCGG	4 cut(s)	165, 419, 550, 565
MspR9I	CCNGG	4 cut(s)	42, 165, 179, 699
MvaI	CCWGG	3 cut(s)	42, 179, 699
MwoI	GCNNNNNNNGC	3 cut(s)	356, 582, 726
NciI	CCSGG	1 cut(s)	165
NcoI	CCATGG	1 cut(s)	631
NdeII	GATC	3 cut(s)	156, 235, 661
NlaIII	CATG	7 cut(s)	100, 310, 350, 471, 626, 635, 881
NlaIV	GGNNCC	2 cut(s)	581, 758
NmuCI	GTSAC	3 cut(s)	421, 850, 866
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	4 cut(s)	100, 350, 471, 881
PaeI	GCATGC	2 cut(s)	350, 881
PaqCI	CACCTGC	1 cut(s)	452
PasI	CCCWGGG	1 cut(s)	178
PciI	ACATGT	1 cut(s)	96
PciSI	GCTCTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	367
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	352, 584, 587
PleI	GAGTC	2 cut(s)	112, 576
PpsI	GAGTC	2 cut(s)	112, 576
PscI	ACATGT	1 cut(s)	96
Psp6I	CCWGG	3 cut(s)	40, 177, 697
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	3 cut(s)	40, 177, 697
PspN4I	GGNNCC	2 cut(s)	581, 758
PspPI	GGNCC	2 cut(s)	147, 181
PsrI	GAACNNNNNNTAC	2 cut(s)	314, 346
PstI	CTGCAG	2 cut(s)	79, 449
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SalI	GTCGAC	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	69, 90
SatI	GCNGC	3 cut(s)	351, 583, 586
Sau3AI	GATC	3 cut(s)	156, 235, 661
Sau96I	GGNCC	2 cut(s)	147, 181
SbfI	CCTGCAGG	2 cut(s)	79, 449
SchI	GAGTC	2 cut(s)	112, 577
ScrFI	CCNGG	4 cut(s)	42, 165, 179, 699
SdaI	CCTGCAGG	2 cut(s)	79, 449
SduI	GDGCHC	2 cut(s)	49, 737
SexAI	ACCWGGT	1 cut(s)	40
SfaNI	GCATC	3 cut(s)	195, 508, 607
SfcI	CTRYAG	2 cut(s)	75, 445
SgrDI	CGTCGACG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SphI	GCATGC	2 cut(s)	350, 881
Sse8387I	CCTGCAGG	2 cut(s)	79, 449
Sse9I	AATT	5 cut(s)	224, 267, 521, 801, 837
SsiI	CCGC	3 cut(s)	199, 583, 712
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	4 cut(s)	40, 163, 177, 697
StyI	CCWWGG	2 cut(s)	631, 846
TaaI	ACNGT	2 cut(s)	691, 810
TaqI	TCGA	4 cut(s)	171, 192, 219, 571
TasI	AATT	5 cut(s)	224, 267, 521, 801, 837
TauI	GCSGC	1 cut(s)	585
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	2 cut(s)	69, 90
Tru9I	TTAA	2 cut(s)	69, 90
TscAI	CASTG	3 cut(s)	742, 787, 815
TseFI	GTSAC	3 cut(s)	421, 850, 866
TseI	GCWGC	2 cut(s)	350, 585
Tsp45I	GTSAC	3 cut(s)	421, 850, 866
TspDTI	ATGAA	2 cut(s)	624, 849
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	3 cut(s)	742, 787, 815
Van91I	CCANNNNNTGG	1 cut(s)	310
VneI	GTGCAC	1 cut(s)	45
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	4 cut(s)	100, 350, 471, 881
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.