Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006476

Physical Location & Seq

Genomic Coordinates Reverse (-)

59089382 .. 59091448

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG374600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCGGAGCACTTGGCATCAATCTTTGGGACGGAGAAGGACAGAGTGAACTGCCCCTTCTACTTCAAAATTGGGGCGTGCAGGCACGGCGATCGGTGCTCCAGGCTTCACACGAAGCCCAGCGTCAGCCCGACTCTGTTGCTCTCCAATATGTACCAGAGGCCCGATATGATCACCCGGGGCGTCGACGCCCAGGGCCAGCCTATCGACCCCCGCCAGATGCAAACTCATTTCGAGGAATTTTATGAGGATCTCTTTCAAGAGCTGAGTAAGTATGGAGAAATTGAAAGCCTGAATGTCTGCGACAACCTAGCTGACCACATGGTGGGCAATGTGTATGTCCAGTTTAGGGAGGAAGAGCATGCTGCAAATGCACTCAAGAATCTGACTGGAAGATTTTATGCTGGGCGTCCTATCATTGTGGACTTCTCTCCGGTGACAGACTTCCGTGAAGCCACCTGCAGGCAATATGAGGAAAATACATGCAATCGTGGTGGATACTGCAACTTTATGCATCTGAAAAGGATTGGGAGGGAATTGAGGCGTGAGTTATTTAGGAGCTACCGGCGAAGGCATAGCCGGAGTCGAAGCAGGAGCCGCAGCCCTTACAGGCATCGTAGCTATGAAGAACGCCCTCATGGTAGCCATGGTCATAGCAGAAGGTATGATGATGGGGATCGGTATCCTGAGAGAAGGAACAGGACTGTAAGCCCTGGCCGAAGTAGGCGGGAACGCAGTAGAAGCAGGAGCACTGAAAGGAGGAGGAGAAGGAACCCCAGTCCAGTTAGAGAAGGCAGTGAGGAGAGACGAGCCAAAATTGAACAGTGGAACAGGGAAAGAGAACAAAATGAAATTGCTTCCAAGGTCACCTCTGTCAGAAGTGACAATGGGCATGCTCAAACTGAAAATCAGAACGGCTATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

308

Amino Acids

36.54

Weight (kDa)

9.74

Isoelectric Point (pI)

81.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	14 - 37	2.3e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
RRM_1	PF00076	83 - 139	7.7e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27650 AT1G27650
fragaria_vesca	FvH4_3g29970 FvH4_3g29970 FvH4_3g29970 FvH4_3g29970
malus_domestica	MD03G1134200.v1.1 MD11G1156400.v1.1
prunus_persica	Prupe.6G118600_v2.0.a1 Prupe.6G118600_v2.0.a1
pyrus_communis	pycom03g09020 pycom11g12700
rosa_chinensis	RchiOBHm_Chr5g0055381 RchiOBHm_Chr5g0055431
rosa_laevigata	RLG00000034985
rosa_multiflora	Rmu_sc0001673.1_g000027 Rmu_sc0014407.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024920 Rroxscaffold_1G00024960
rosa_samantha	Rh5AG362400 Rh5BG374600 Rh5CG396200 Rh5CG396400 Rh5DG387700
rosa_wichuraiana	Rw5G034090 Rw5G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	4 cut(s)	5, 214, 598, 727
AclWI	GGATC	2 cut(s)	258, 684
AcoI	YGGCCR	1 cut(s)	715
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	3 cut(s)	183, 189, 409
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	3 cut(s)	325, 349, 462
AgsI	TTSAA	4 cut(s)	67, 260, 287, 821
AjnI	CCWGG	3 cut(s)	101, 192, 712
AluBI	AGCT	4 cut(s)	265, 314, 561, 621
AluI	AGCT	4 cut(s)	265, 314, 561, 621
Alw21I	GWGCWC	3 cut(s)	12, 101, 752
Alw26I	GTCTC	1 cut(s)	799
AlwI	GGATC	2 cut(s)	258, 684
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	3 cut(s)	161, 196, 715
ApeKI	GCWGC	2 cut(s)	365, 600
ApoI	RAATTY	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	162, 196
AsuC2I	CCSGG	2 cut(s)	178, 179
AsuHPI	GGTGA	3 cut(s)	166, 448, 859
AvaI	CYCGRG	1 cut(s)	177
Bbv12I	GWGCWC	3 cut(s)	12, 101, 752
BbvI	GCAGC	2 cut(s)	352, 612
BccI	CCATC	1 cut(s)	665
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	4 cut(s)	74, 108, 121, 155
BciT130I	CCWGG	3 cut(s)	103, 194, 714
BciVI	GTATCC	2 cut(s)	491, 693
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	2 cut(s)	178, 179
BcoDI	GTCTC	1 cut(s)	799
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	460
BfuAI	ACCTGC	1 cut(s)	467
BfuI	GTATCC	2 cut(s)	491, 693
BisI	GCNGC	3 cut(s)	366, 598, 601
BlsI	GCNGC	3 cut(s)	367, 599, 602
Bme1390I	CCNGG	5 cut(s)	103, 178, 179, 194, 714
BmeT110I	CYCGRG	1 cut(s)	177
BmgT120I	GGNCC	2 cut(s)	162, 196
BmiI	GGNNCC	2 cut(s)	596, 773
BmrFI	CCNGG	5 cut(s)	103, 178, 179, 194, 714
BmrI	ACTGGG	1 cut(s)	771
BmsI	GCATC	4 cut(s)	26, 210, 523, 622
BmuI	ACTGGG	1 cut(s)	771
BpmI	CTGGAG	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	2 cut(s)	178, 179
BsaBI	GATNNNNATC	2 cut(s)	675, 681
BsaHI	GRCGYC	3 cut(s)	183, 189, 409
BsaJI	CCNNGG	7 cut(s)	177, 178, 192, 193, 646, 712, 861
BsaWI	WCCGGW	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 349, 462
Bse118I	RCCGGY	1 cut(s)	564
Bse1I	ACTGG	4 cut(s)	343, 394, 777, 782
Bse3DI	GCAATG	1 cut(s)	337
Bse8I	GATNNNNATC	2 cut(s)	675, 681
BseBI	CCWGG	3 cut(s)	103, 194, 714
BseDI	CCNNGG	7 cut(s)	177, 178, 192, 193, 646, 712, 861
BseJI	GATNNNNATC	2 cut(s)	675, 681
BseLI	CCNNNNNNNGG	3 cut(s)	325, 349, 462
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	257, 678
BseNI	ACTGG	4 cut(s)	343, 394, 777, 782
BseRI	GAGGAG	3 cut(s)	775, 778, 815
BseXI	GCAGC	2 cut(s)	352, 612
BseYI	CCCAGC	2 cut(s)	119, 404
BsgI	GTGCAG	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	163, 198, 717
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	3 cut(s)	12, 101, 752
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	4 cut(s)	178, 434, 565, 580
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	325, 349, 462
BsmAI	GTCTC	1 cut(s)	799
BsmBI	CGTCTC	1 cut(s)	799
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	163, 198, 717
BsoBI	CYCGRG	1 cut(s)	177
Bsp1286I	GDGCHC	3 cut(s)	12, 101, 752
Bsp143I	GATC	4 cut(s)	91, 171, 250, 676
Bsp19I	CCATGG	1 cut(s)	646
BspACI	CCGC	4 cut(s)	5, 214, 598, 727
BspANI	GGCC	3 cut(s)	163, 198, 717
BspCNI	CTCAG	2 cut(s)	258, 679
BspLI	GGNNCC	2 cut(s)	596, 773
BspMAI	CTGCAG	1 cut(s)	464
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	2 cut(s)	258, 684
BspQI	GCTCTTC	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	564
BsrI	ACTGG	4 cut(s)	343, 394, 777, 782
BssAI	RCCGGY	1 cut(s)	564
BssECI	CCNNGG	7 cut(s)	177, 178, 192, 193, 646, 712, 861
BssMI	GATC	4 cut(s)	91, 171, 250, 676
BssNI	GRCGYC	3 cut(s)	183, 189, 409
BssT1I	CCWWGG	2 cut(s)	646, 861
Bst2UI	CCWGG	3 cut(s)	103, 194, 714
Bst4CI	ACNGT	2 cut(s)	706, 825
Bst6I	CTCTTC	1 cut(s)	351
BstACI	GRCGYC	3 cut(s)	183, 189, 409
BstC8I	GCNNGC	6 cut(s)	79, 83, 200, 363, 464, 894
BstDEI	CTNAG	2 cut(s)	266, 687
BstDSI	CCRYGG	1 cut(s)	646
BstEII	GGTNACC	1 cut(s)	865
BstKTI	GATC	4 cut(s)	94, 174, 253, 679
BstMAI	GTCTC	1 cut(s)	799
BstMBI	GATC	4 cut(s)	91, 171, 250, 676
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	5 cut(s)	87, 96, 371, 597, 741
BstNI	CCWGG	3 cut(s)	103, 194, 714
BstNSI	RCATGY	3 cut(s)	365, 486, 896
BstPI	GGTNACC	1 cut(s)	865
BstSCI	CCNGG	5 cut(s)	101, 176, 177, 192, 712
BstSFI	CTRYAG	1 cut(s)	460
BstV1I	GCAGC	2 cut(s)	352, 612
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuI	GTATCC	2 cut(s)	491, 693
BsuRI	GGCC	3 cut(s)	163, 198, 717
BtgI	CCRYGG	1 cut(s)	646
BtsI	GCAGTG	1 cut(s)	802
BtsIMutI	CAGTG	3 cut(s)	750, 802, 830
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	6 cut(s)	79, 83, 200, 363, 464, 894
Cfr10I	RCCGGY	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	162, 196
Cfr9I	CCCGGG	1 cut(s)	177
CseI	GACGC	4 cut(s)	112, 172, 197, 398
Csp6I	GTAC	1 cut(s)	154
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	6 cut(s)	322, 362, 483, 638, 647, 893
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	266, 687
DpnI	GATC	4 cut(s)	93, 173, 252, 678
DpnII	GATC	4 cut(s)	91, 171, 250, 676
DraIII	CACNNNGTG	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	715
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	646, 861
Eco88I	CYCGRG	1 cut(s)	177
Eco91I	GGTNACC	1 cut(s)	865
EcoO65I	GGTNACC	1 cut(s)	865
EcoRII	CCWGG	3 cut(s)	101, 192, 712
EcoT14I	CCWWGG	2 cut(s)	646, 861
EcoT22I	ATGCAT	1 cut(s)	516
ErhI	CCWWGG	2 cut(s)	646, 861
Esp3I	CGTCTC	1 cut(s)	799
FaeI	CATG	6 cut(s)	325, 365, 486, 641, 650, 896
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	6 cut(s)	321, 361, 482, 637, 646, 892
FauI	CCCGC	2 cut(s)	221, 720
FbaI	TGATCA	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	366, 598, 601
Fsp4HI	GCNGC	3 cut(s)	366, 598, 601
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	3 cut(s)	366, 598, 601
GsaI	CCCAGC	2 cut(s)	123, 408
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	163, 198, 717
HapII	CCGG	4 cut(s)	178, 434, 565, 580
HgaI	GACGC	4 cut(s)	112, 172, 197, 398
Hin1I	GRCGYC	3 cut(s)	183, 189, 409
Hin1II	CATG	6 cut(s)	325, 365, 486, 641, 650, 896
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	3 cut(s)	133, 382, 583
HpaII	CCGG	4 cut(s)	178, 434, 565, 580
HphI	GGTGA	3 cut(s)	166, 448, 859
Hpy166II	GTNNAC	3 cut(s)	49, 187, 424
Hpy188I	TCNGA	4 cut(s)	387, 519, 878, 912
Hpy188III	TCNNGA	3 cut(s)	260, 379, 686
Hpy8I	GTNNAC	3 cut(s)	49, 187, 424
Hpy99I	CGWCG	2 cut(s)	188, 191
HpyAV	CCTTC	7 cut(s)	31, 67, 564, 654, 687, 762, 785
HpyCH4III	ACNGT	2 cut(s)	706, 825
HpyCH4V	TGCA	8 cut(s)	81, 223, 368, 374, 462, 486, 504, 514
HpyF10VI	GCNNNNNNNGC	5 cut(s)	87, 96, 371, 597, 741
HpyF3I	CTNAG	2 cut(s)	266, 687
Hsp92I	GRCGYC	3 cut(s)	183, 189, 409
Hsp92II	CATG	6 cut(s)	325, 365, 486, 641, 650, 896
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	91, 171, 250, 676
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	5 cut(s)	7, 104, 558, 594, 747
Lsp1109I	GCAGC	2 cut(s)	352, 612
LweI	GCATC	4 cut(s)	26, 210, 523, 622
MaeI	CTAG	1 cut(s)	311
MaeIII	GTNAC	3 cut(s)	436, 865, 881
MalI	GATC	4 cut(s)	93, 173, 252, 678
MboI	GATC	4 cut(s)	91, 171, 250, 676
MboII	GAAGA	3 cut(s)	368, 405, 638
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	3 cut(s)	12, 101, 752
MluCI	AATT	6 cut(s)	69, 239, 282, 536, 816, 852
MlyI	GAGTC	2 cut(s)	127, 592
Mph1103I	ATGCAT	1 cut(s)	516
MspI	CCGG	4 cut(s)	178, 434, 565, 580
MspR9I	CCNGG	5 cut(s)	103, 178, 179, 194, 714
MvaI	CCWGG	3 cut(s)	103, 194, 714
MwoI	GCNNNNNNNGC	5 cut(s)	87, 96, 371, 597, 741
NciI	CCSGG	2 cut(s)	178, 179
NcoI	CCATGG	1 cut(s)	646
NdeII	GATC	4 cut(s)	91, 171, 250, 676
NlaIII	CATG	6 cut(s)	325, 365, 486, 641, 650, 896
NlaIV	GGNNCC	2 cut(s)	596, 773
NmuCI	GTSAC	3 cut(s)	436, 865, 881
NsiI	ATGCAT	1 cut(s)	516
NspI	RCATGY	3 cut(s)	365, 486, 896
PaeI	GCATGC	2 cut(s)	365, 896
PaqCI	CACCTGC	1 cut(s)	467
PasI	CCCWGGG	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	367, 599, 602
Ple19I	CGATCG	1 cut(s)	94
PleI	GAGTC	2 cut(s)	127, 591
PpsI	GAGTC	2 cut(s)	127, 591
Psp6I	CCWGG	3 cut(s)	101, 192, 712
PspEI	GGTNACC	1 cut(s)	865
PspFI	CCCAGC	2 cut(s)	119, 404
PspGI	CCWGG	3 cut(s)	101, 192, 712
PspN4I	GGNNCC	2 cut(s)	596, 773
PspPI	GGNCC	2 cut(s)	162, 196
PstI	CTGCAG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	250
PvuI	CGATCG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SalI	GTCGAC	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	351
SatI	GCNGC	3 cut(s)	366, 598, 601
Sau3AI	GATC	4 cut(s)	91, 171, 250, 676
Sau96I	GGNCC	2 cut(s)	162, 196
SbfI	CCTGCAGG	1 cut(s)	464
SchI	GAGTC	2 cut(s)	127, 592
ScrFI	CCNGG	5 cut(s)	103, 178, 179, 194, 714
SdaI	CCTGCAGG	1 cut(s)	464
SduI	GDGCHC	3 cut(s)	12, 101, 752
SetI	ASST	9 cut(s)	267, 312, 316, 461, 563, 623, 665, 867, 872
SfaNI	GCATC	4 cut(s)	26, 210, 523, 622
SfcI	CTRYAG	1 cut(s)	460
SgrDI	CGTCGACG	1 cut(s)	185
SmaI	CCCGGG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SphI	GCATGC	2 cut(s)	365, 896
Sse8387I	CCTGCAGG	1 cut(s)	464
Sse9I	AATT	6 cut(s)	69, 239, 282, 536, 816, 852
SsiI	CCGC	4 cut(s)	5, 214, 598, 727
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	5 cut(s)	101, 176, 177, 192, 712
StyI	CCWWGG	2 cut(s)	646, 861
TaaI	ACNGT	2 cut(s)	706, 825
TaqI	TCGA	4 cut(s)	186, 207, 234, 586
TasI	AATT	6 cut(s)	69, 239, 282, 536, 816, 852
TauI	GCSGC	1 cut(s)	600
TfiI	GAWTC	1 cut(s)	382
TscAI	CASTG	3 cut(s)	757, 802, 830
TseFI	GTSAC	3 cut(s)	436, 865, 881
TseI	GCWGC	2 cut(s)	365, 600
Tsp45I	GTSAC	3 cut(s)	436, 865, 881
TspDTI	ATGAA	2 cut(s)	639, 864
TspGWI	ACGGA	2 cut(s)	47, 437
TspMI	CCCGGG	1 cut(s)	177
TspRI	CASTG	3 cut(s)	757, 802, 830
Van91I	CCANNNNNTGG	1 cut(s)	325
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	3 cut(s)	365, 486, 896
XmaI	CCCGGG	1 cut(s)	177
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	311
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.