Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001673.1

Orthogroup ID

OG0006476

Physical Location & Seq

Genomic Coordinates Reverse (-)

122179 .. 124284

Gene Structure 2106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001673.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggcggagcacttggcttcaatctttgggacggagaaggacagagtgaactgccccttctacttcaaaataggggcgtgcaggcacggcgatcggtgctccaggcttcacacgaagcccagcgtcagcccgactctgttgctctccaatatgtaccagaggcccgatatgatcacccccggcgtcgacgcccagggccagcctatcgacccccgccagatgcaaacccatttcgaggaattttatgaggatctctttcaagagctgagtaagtatggagaaattgaaagcctgaatgtctgcgacaacctagctgaccacatggtgggcaatgtgtatgttcagtttagggaggaagagcatgctgcaaatgcactcaagaatctgactggaagattttatgctgggcgtcctatcattgtggacttctctccggtgacagacttccgtgaagccacctgcaggcaatatgacgaaaatacgtgcaatcgtggtggatactgcaattttatgcatctgaaaaggattgggaggagccgcagcccttacaggcatcgtagctatgaagaacgccctcatggtagccatggtcatagcagaaggtatgatgacggggatcggtatcctgagagaaggaacaggactgtaagccctggccgaagtaggcgggaacgcagtagaagcaggagcactgaaaggaggaggagaaggaaccccagtccagttagagaaggcagtgaggagagacgagccaaaattgaacagtggaacagggaaagagaacaaaatgaaattgcttccaaggtcacatctgtcagaagtgacaatgggcatgctcaaactgaaaatcagaacggctatgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

288

Amino Acids

33.78

Weight (kDa)

9.07

Isoelectric Point (pI)

73.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27650 AT1G27650
fragaria_vesca	FvH4_3g29970 FvH4_3g29970 FvH4_3g29970 FvH4_3g29970
malus_domestica	MD03G1134200.v1.1 MD11G1156400.v1.1
prunus_persica	Prupe.6G118600_v2.0.a1 Prupe.6G118600_v2.0.a1
pyrus_communis	pycom03g09020 pycom11g12700
rosa_chinensis	RchiOBHm_Chr5g0055381 RchiOBHm_Chr5g0055431
rosa_laevigata	RLG00000034985
rosa_multiflora	Rmu_sc0001673.1_g000027 Rmu_sc0014407.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024920 Rroxscaffold_1G00024960
rosa_samantha	Rh5AG362400 Rh5BG374600 Rh5CG396200 Rh5CG396400 Rh5DG387700
rosa_wichuraiana	Rw5G034090 Rw5G034120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	4 cut(s)	5, 214, 538, 667
AclWI	GGATC	2 cut(s)	258, 624
AcoI	YGGCCR	1 cut(s)	655
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	3 cut(s)	183, 189, 409
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	3 cut(s)	235, 325, 462
AgsI	TTSAA	5 cut(s)	21, 67, 260, 287, 761
AjnI	CCWGG	3 cut(s)	101, 192, 652
AluBI	AGCT	3 cut(s)	265, 314, 561
AluI	AGCT	3 cut(s)	265, 314, 561
Alw21I	GWGCWC	3 cut(s)	12, 101, 692
Alw26I	GTCTC	1 cut(s)	739
AlwI	GGATC	2 cut(s)	258, 624
AoxI	GGCC	3 cut(s)	161, 196, 655
ApeKI	GCWGC	2 cut(s)	365, 540
ApoI	RAATTY	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	162, 196
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	166, 448
Bbv12I	GWGCWC	3 cut(s)	12, 101, 692
BbvI	GCAGC	2 cut(s)	352, 552
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	4 cut(s)	74, 108, 121, 155
BciT130I	CCWGG	3 cut(s)	103, 194, 654
BciVI	GTATCC	2 cut(s)	491, 633
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	739
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	460
BfuAI	ACCTGC	1 cut(s)	467
BfuI	GTATCC	2 cut(s)	491, 633
BisI	GCNGC	3 cut(s)	366, 538, 541
BlsI	GCNGC	3 cut(s)	367, 539, 542
Bme1390I	CCNGG	4 cut(s)	103, 180, 194, 654
BmgT120I	GGNCC	2 cut(s)	162, 196
BmiI	GGNNCC	2 cut(s)	536, 713
BmrFI	CCNGG	4 cut(s)	103, 180, 194, 654
BmrI	ACTGGG	1 cut(s)	711
BmsI	GCATC	3 cut(s)	210, 523, 562
BmuI	ACTGGG	1 cut(s)	711
BpmI	CTGGAG	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	180
BsaAI	YACGTR	1 cut(s)	483
BsaBI	GATNNNNATC	1 cut(s)	621
BsaHI	GRCGYC	3 cut(s)	183, 189, 409
BsaJI	CCNNGG	6 cut(s)	178, 192, 193, 586, 652, 801
BsaWI	WCCGGW	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 325, 462
Bse1I	ACTGG	3 cut(s)	394, 717, 722
Bse3DI	GCAATG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	3 cut(s)	103, 194, 654
BseDI	CCNNGG	6 cut(s)	178, 192, 193, 586, 652, 801
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	3 cut(s)	235, 325, 462
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	257, 618
BseNI	ACTGG	3 cut(s)	394, 717, 722
BseRI	GAGGAG	4 cut(s)	547, 715, 718, 755
BseXI	GCAGC	2 cut(s)	352, 552
BseYI	CCCAGC	2 cut(s)	119, 404
BsgI	GTGCAG	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	163, 198, 657
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	3 cut(s)	12, 101, 692
BsiSI	CCGG	2 cut(s)	180, 434
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	235, 325, 462
BsmAI	GTCTC	1 cut(s)	739
BsmBI	CGTCTC	1 cut(s)	739
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	163, 198, 657
Bsp1286I	GDGCHC	3 cut(s)	12, 101, 692
Bsp143I	GATC	4 cut(s)	91, 171, 250, 616
Bsp19I	CCATGG	1 cut(s)	586
BspACI	CCGC	4 cut(s)	5, 214, 538, 667
BspANI	GGCC	3 cut(s)	163, 198, 657
BspCNI	CTCAG	2 cut(s)	258, 619
BspLI	GGNNCC	2 cut(s)	536, 713
BspMAI	CTGCAG	1 cut(s)	464
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	2 cut(s)	258, 624
BspQI	GCTCTTC	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	3 cut(s)	394, 717, 722
BssECI	CCNNGG	6 cut(s)	178, 192, 193, 586, 652, 801
BssMI	GATC	4 cut(s)	91, 171, 250, 616
BssNI	GRCGYC	3 cut(s)	183, 189, 409
BssT1I	CCWWGG	2 cut(s)	586, 801
Bst2UI	CCWGG	3 cut(s)	103, 194, 654
Bst4CI	ACNGT	2 cut(s)	646, 765
Bst6I	CTCTTC	1 cut(s)	351
BstACI	GRCGYC	3 cut(s)	183, 189, 409
BstBAI	YACGTR	1 cut(s)	483
BstC8I	GCNNGC	6 cut(s)	79, 83, 200, 363, 464, 834
BstDEI	CTNAG	2 cut(s)	266, 627
BstDSI	CCRYGG	1 cut(s)	586
BstKTI	GATC	4 cut(s)	94, 174, 253, 619
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	4 cut(s)	91, 171, 250, 616
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 96, 371, 681
BstNI	CCWGG	3 cut(s)	103, 194, 654
BstNSI	RCATGY	2 cut(s)	365, 836
BstSCI	CCNGG	4 cut(s)	101, 178, 192, 652
BstSFI	CTRYAG	1 cut(s)	460
BstV1I	GCAGC	2 cut(s)	352, 552
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuI	GTATCC	2 cut(s)	491, 633
BsuRI	GGCC	3 cut(s)	163, 198, 657
BtgI	CCRYGG	1 cut(s)	586
BtsI	GCAGTG	1 cut(s)	742
BtsIMutI	CAGTG	3 cut(s)	690, 742, 770
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	6 cut(s)	79, 83, 200, 363, 464, 834
Cfr13I	GGNCC	2 cut(s)	162, 196
CseI	GACGC	4 cut(s)	112, 172, 197, 398
Csp6I	GTAC	1 cut(s)	154
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	5 cut(s)	322, 362, 578, 587, 833
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	266, 627
DpnI	GATC	4 cut(s)	93, 173, 252, 618
DpnII	GATC	4 cut(s)	91, 171, 250, 616
DraIII	CACNNNGTG	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	655
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	586, 801
EcoRII	CCWGG	3 cut(s)	101, 192, 652
EcoT14I	CCWWGG	2 cut(s)	586, 801
EcoT22I	ATGCAT	1 cut(s)	516
ErhI	CCWWGG	2 cut(s)	586, 801
Esp3I	CGTCTC	1 cut(s)	739
FaeI	CATG	5 cut(s)	325, 365, 581, 590, 836
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	5 cut(s)	321, 361, 577, 586, 832
FauI	CCCGC	2 cut(s)	221, 660
FbaI	TGATCA	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	366, 538, 541
Fsp4HI	GCNGC	3 cut(s)	366, 538, 541
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	3 cut(s)	366, 538, 541
GsaI	CCCAGC	2 cut(s)	123, 408
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	163, 198, 657
HapII	CCGG	2 cut(s)	180, 434
HgaI	GACGC	4 cut(s)	112, 172, 197, 398
Hin1I	GRCGYC	3 cut(s)	183, 189, 409
Hin1II	CATG	5 cut(s)	325, 365, 581, 590, 836
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	2 cut(s)	133, 382
HpaII	CCGG	2 cut(s)	180, 434
HphI	GGTGA	2 cut(s)	166, 448
Hpy166II	GTNNAC	3 cut(s)	49, 187, 424
Hpy188I	TCNGA	4 cut(s)	387, 519, 818, 852
Hpy188III	TCNNGA	3 cut(s)	260, 379, 626
Hpy8I	GTNNAC	3 cut(s)	49, 187, 424
Hpy99I	CGWCG	2 cut(s)	188, 191
HpyAV	CCTTC	6 cut(s)	31, 67, 594, 627, 702, 725
HpyCH4III	ACNGT	2 cut(s)	646, 765
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	8 cut(s)	81, 223, 368, 374, 462, 486, 504, 514
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 96, 371, 681
HpyF3I	CTNAG	2 cut(s)	266, 627
HpySE526I	ACGT	1 cut(s)	482
Hsp92I	GRCGYC	3 cut(s)	183, 189, 409
Hsp92II	CATG	5 cut(s)	325, 365, 581, 590, 836
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	91, 171, 250, 616
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	4 cut(s)	7, 104, 534, 687
Lsp1109I	GCAGC	2 cut(s)	352, 552
LweI	GCATC	3 cut(s)	210, 523, 562
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	3 cut(s)	436, 805, 821
MalI	GATC	4 cut(s)	93, 173, 252, 618
MboI	GATC	4 cut(s)	91, 171, 250, 616
MboII	GAAGA	3 cut(s)	368, 405, 578
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	3 cut(s)	12, 101, 692
MluCI	AATT	5 cut(s)	239, 282, 505, 756, 792
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	9 cut(s)	153, 229, 241, 346, 525, 585, 693, 696, 733
Mph1103I	ATGCAT	1 cut(s)	516
MspI	CCGG	2 cut(s)	180, 434
MspR9I	CCNGG	4 cut(s)	103, 180, 194, 654
MvaI	CCWGG	3 cut(s)	103, 194, 654
MwoI	GCNNNNNNNGC	4 cut(s)	87, 96, 371, 681
NciI	CCSGG	1 cut(s)	180
NcoI	CCATGG	1 cut(s)	586
NdeII	GATC	4 cut(s)	91, 171, 250, 616
NlaIII	CATG	5 cut(s)	325, 365, 581, 590, 836
NlaIV	GGNNCC	2 cut(s)	536, 713
NmuCI	GTSAC	3 cut(s)	436, 805, 821
NsiI	ATGCAT	1 cut(s)	516
NspI	RCATGY	2 cut(s)	365, 836
PaeI	GCATGC	2 cut(s)	365, 836
PaqCI	CACCTGC	1 cut(s)	467
PasI	CCCWGGG	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	367, 539, 542
Ple19I	CGATCG	1 cut(s)	94
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Ppu21I	YACGTR	1 cut(s)	483
Psp6I	CCWGG	3 cut(s)	101, 192, 652
PspFI	CCCAGC	2 cut(s)	119, 404
PspGI	CCWGG	3 cut(s)	101, 192, 652
PspN4I	GGNNCC	2 cut(s)	536, 713
PspPI	GGNCC	2 cut(s)	162, 196
PstI	CTGCAG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	250
PvuI	CGATCG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SalI	GTCGAC	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	351
SatI	GCNGC	3 cut(s)	366, 538, 541
Sau3AI	GATC	4 cut(s)	91, 171, 250, 616
Sau96I	GGNCC	2 cut(s)	162, 196
SbfI	CCTGCAGG	1 cut(s)	464
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	4 cut(s)	103, 180, 194, 654
SdaI	CCTGCAGG	1 cut(s)	464
SduI	GDGCHC	3 cut(s)	12, 101, 692
SetI	ASST	8 cut(s)	267, 312, 316, 461, 485, 563, 605, 807
SfaNI	GCATC	3 cut(s)	210, 523, 562
SfcI	CTRYAG	1 cut(s)	460
SgrDI	CGTCGACG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SphI	GCATGC	2 cut(s)	365, 836
Sse8387I	CCTGCAGG	1 cut(s)	464
Sse9I	AATT	5 cut(s)	239, 282, 505, 756, 792
SsiI	CCGC	4 cut(s)	5, 214, 538, 667
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	4 cut(s)	101, 178, 192, 652
StyI	CCWWGG	2 cut(s)	586, 801
TaaI	ACNGT	2 cut(s)	646, 765
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	3 cut(s)	186, 207, 234
TasI	AATT	5 cut(s)	239, 282, 505, 756, 792
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	382
TscAI	CASTG	3 cut(s)	697, 742, 770
TseFI	GTSAC	3 cut(s)	436, 805, 821
TseI	GCWGC	2 cut(s)	365, 540
Tsp45I	GTSAC	3 cut(s)	436, 805, 821
TspDTI	ATGAA	2 cut(s)	579, 804
TspGWI	ACGGA	2 cut(s)	47, 437
TspRI	CASTG	3 cut(s)	697, 742, 770
Van91I	CCANNNNNTGG	1 cut(s)	325
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	2 cut(s)	365, 836
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	311
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.